title: Automated analysis of dynamic Ca2+ signals in image sequences.
abstract: Intracellular Ca(2+) signals are commonly studied with fluorescent Ca(2+) indicator dyes and microscopy techniques. However, quantitative analysis of Ca(2+) imaging data is time consuming and subject to bias. Automated signal analysis algorithms based on region of interest (ROI) detection have been implemented for one-dimensional line scan measurements, but there is no current algorithm which integrates optimized identification and analysis of ROIs in two-dimensional image sequences. Here an algorithm for rapid acquisition and analysis of ROIs in image sequences is described. It utilizes ellipses fit to noise filtered signals in order to determine optimal ROI placement, and computes Ca(2+) signal parameters of amplitude, duration and spatial spread. This algorithm was implemented as a freely available plugin for ImageJ (NIH) software. Together with analysis scripts written for the open source statistical processing software R, this approach provides a high-capacity pipeline for performing quick statistical analysis of experimental output. The authors suggest that use of this analysis protocol will lead to a more complete and unbiased characterization of physiologic Ca(2+) signaling.
authors: Department of Pharmacology, University of South Alabama.
authors: Michael
authors: M
authors: Francis
authors: Department of Physiology, University of South Alabama.
authors: Josh
authors: J
authors: Waldrup
authors: Department of Physiology, University of South Alabama.
authors: Xun
authors: X
authors: Qian
authors: Department of Physiology, University of South Alabama; mtaylor@southalabama.edu.
authors: Mark S
authors: MS
authors: Taylor
mesh_terms: D000465:Algorithms; D000818:Animals; D002118:Calcium / Q000032:analysis* / Q000737:chemistry / Q000378:metabolism; D020013:Calcium Signaling / Q000502:physiology*; D005456:Fluorescent Dyes / Q000032:analysis* / Q000737:chemistry; D008856:Microscopy, Fluorescence / Q000379:methods*; D012815:Signal Processing, Computer-Assisted; D012984:Software; D013552:Swine
chemical_list: D005456:Fluorescent Dyes; D002118:Calcium