title: Leaf and root-associated fungal assemblages do not follow similar elevational diversity patterns.
abstract: The diversity of fungi along environmental gradients has been little explored in contrast to plants and animals. Consequently, environmental factors influencing the composition of fungal assemblages are poorly understood. The aim of this study was to determine whether the diversity and composition of leaf and root-associated fungal assemblages vary with elevation and to investigate potential explanatory variables. High-throughput sequencing of the Internal Transcribed Spacer 1 region was used to explore fungal assemblages along three elevation gradients, located in French mountainous regions. Beech forest was selected as a study system to minimise the host effect. The variation in species richness and specific composition was investigated for ascomycetes and basidiomycetes assemblages with a particular focus on root-associated ectomycorrhizal fungi. The richness of fungal communities associated with leaves or roots did not significantly relate to any of the tested environmental drivers, i.e. elevation, mean temperature, precipitation or edaphic variables such as soil pH or the ratio carbon∶nitrogen. Nevertheless, the ascomycete species richness peaked at mid-temperature, illustrating a mid-domain effect model. We found that leaf and root-associated fungal assemblages did not follow similar patterns of composition with elevation. While the composition of the leaf-associated fungal assemblage correlated primarily with the mean annual temperature, the composition of root-associated fungal assemblage was explained equally by soil pH and by temperature. The ectomycorrhizal composition was also related to these variables. Our results therefore suggest that above and below-ground fungal assemblages are not controlled by the same main environmental variables. This may be due to the larger amplitude of climatic variables in the tree foliage compared to the soil environment.
authors: INRA, UMR 1136 INRA Université de Lorraine «Interactions Arbres-Microorganismes», Labex ARBRE, FR EFABA, Champenoux, France.
authors: Aurore
authors: A
authors: Coince
authors: INRA, BIOGECO, UMR1202, Cestas, France; Univ. Bordeaux, BIOGECO, UMR1202, Talence, France.
authors: Tristan
authors: T
authors: Cordier
authors: INRA, UMR 1136 INRA Université de Lorraine «Interactions Arbres-Microorganismes», Labex ARBRE, FR EFABA, Champenoux, France.
authors: Juliette
authors: J
authors: Lengellé
authors: Irstea, UR EMGR Ecosystèmes Montagnards, 38402 St-Martin-d'Heres, France.
authors: Emmanuel
authors: E
authors: Defossez
authors: INRA, BIOGECO, UMR1202, Cestas, France; Univ. Bordeaux, BIOGECO, UMR1202, Talence, France.
authors: Corinne
authors: C
authors: Vacher
authors: INRA, BIOGECO, UMR1202, Cestas, France; Univ. Bordeaux, BIOGECO, UMR1202, Talence, France.
authors: Cécile
authors: C
authors: Robin
authors: INRA, UMR 1136 INRA Université de Lorraine «Interactions Arbres-Microorganismes», Labex ARBRE, FR EFABA, Champenoux, France.
authors: Marc
authors: M
authors: Buée
authors: INRA, UMR 1136 INRA Université de Lorraine «Interactions Arbres-Microorganismes», Labex ARBRE, FR EFABA, Champenoux, France.
authors: Benoît
authors: B
authors: Marçais
mesh_terms: D001203:Ascomycota / Q000235:genetics / Q000502:physiology; D001487:Basidiomycota / Q000235:genetics / Q000502:physiology; D044822:Biodiversity; D002244:Carbon / Q000378:metabolism; D019295:Computational Biology; D004271:DNA, Fungal / Q000737:chemistry / Q000302:isolation & purification; D029964:Fagus / Q000382:microbiology*; D005658:Fungi / Q000235:genetics / Q000502:physiology*; D006863:Hydrogen-Ion Concentration; D009584:Nitrogen / Q000378:metabolism; D010758:Phosphorus / Q000378:metabolism; D018515:Plant Leaves / Q000382:microbiology*; D018517:Plant Roots / Q000382:microbiology*; D017422:Sequence Analysis, DNA; D012988:Soil Microbiology; D013696:Temperature
chemical_list: D004271:DNA, Fungal; D010758:Phosphorus; D002244:Carbon; D009584:Nitrogen