title: Integrated mRNA and micro RNA profiling reveals epigenetic mechanism of differential sensitivity of Jurkat T cells to AgNPs and Ag ions.
abstract: In our previous in vitro study of the toxicity on silver nanoparticles (AgNPs), we observed a dramatically higher sensitivity of Jurkat T cells to AgNPs than to Ag ions, and DNA damage and apoptosis were found to be involved in that toxicity. In this study, to understand underlying mechanism of different sensitivity of Jurket T cells to AgNPs and Ag ions, mRNA microarray and micro RNA microarray were concomitantly conducted on AgNPs and Ag ions exposed Jurkat T cells. Surprisingly only a small number of genes were differentially expressed by exposure to each of the silver (15 altered mRNA by AgNPs exposure, whereas 4 altered mRNA by Ag ions exposure, as determined 1.5-fold change as the cut-off value). miRNA microarray revealed that the expression of 63 miRNAs was altered by AgNPs exposure, whereas that of 32 miRNAs was altered by Ag ions exposure. An integrated analysis of mRNA and miRNA expression revealed that the expression of hsa-miR-219-5p, was negatively correlated with the expression of metallothionein 1F (MT1F) and tribbles homolog 3 (TRIB3), in cells exposed to AgNPs; whereas, the expression of hsa-miR-654-3p was negatively correlated with the expression of mRNA, endonuclease G-like 1 (EDGL1) in cells exposed to Ag ions. Network analysis were further conducted on mRNA-miRNA pairs, which revealed that miR-219-5p-MT1F and -TRIB3 pairs by AgNPs are being involved in various cellular processes, such as, oxidative stress, cell cycle and apoptosis, whereas, miR-654-3p and ENDOGL1 pair by Ag ions generated a much simpler network. The putative target genes of AgNPs-induced miR-504, miR-33 and miR-302 identified by Tarbase 6.0 are also found to be involved in DNA damage and apoptosis. These results collectively suggest that distinct epigenetic regulation may be an underlying mechanism of different sensitivity of Jurkat T cells to AgNPs and Ag ion. Further identification of putative target genes of DE miRNA by AgNPs and Ag ions may provide additional clues for the mechanism of differential toxicity. Overall results suggest that epigenetic mechanism is involved in toxicity of AgNPs and Ag ions in Jurkat T cells.
authors: School of Environmental Engineering, Graduate School of Energy and Environmental system Engineering, University of Seoul, 163 Siripdaero, Dongdaemun-gu, Seoul 130-743, South Korea.
authors: Hyun-Jeong
authors: HJ
authors: Eom
authors: School of Environmental Engineering, Graduate School of Energy and Environmental system Engineering, University of Seoul, 163 Siripdaero, Dongdaemun-gu, Seoul 130-743, South Korea.
authors: Nivedita
authors: N
authors: Chatterjee
authors: National Instrumentation Center for Environmental Management, College of Agriculture and Life Sciences, Seoul National University, Seoul 151-921, South Korea.
authors: Jeongsoo
authors: J
authors: Lee
authors: School of Environmental Engineering, Graduate School of Energy and Environmental system Engineering, University of Seoul, 163 Siripdaero, Dongdaemun-gu, Seoul 130-743, South Korea. Electronic address: jinhchoi@uos.ac.kr.
authors: Jinhee
authors: J
authors: Choi
mesh_terms: D017209:Apoptosis / Q000187:drug effects; D002453:Cell Cycle / Q000187:drug effects; D049109:Cell Proliferation / Q000187:drug effects; D044127:Epigenesis, Genetic / Q000187:drug effects*; D015870:Gene Expression / Q000187:drug effects; D006801:Humans; D019169:Jurkat Cells; D053768:Metal Nanoparticles / Q000633:toxicity*; D035683:MicroRNAs / Q000096:biosynthesis*; D046228:Microarray Analysis; D018384:Oxidative Stress / Q000187:drug effects; D012333:RNA, Messenger / Q000096:biosynthesis*; D060888:Real-Time Polymerase Chain Reaction; D015398:Signal Transduction / Q000187:drug effects; D012834:Silver / Q000633:toxicity*
chemical_list: D035683:MicroRNAs; D012333:RNA, Messenger; D012834:Silver
keywords: Epigenetic mechanism; Integrated analysis; Silver nanoparticles; miR-219-5p; miR-654-3p