title: Bias atlases for segmentation-based PET attenuation correction using PET-CT and MR.
abstract: This study was to obtain voxel-wise PET accuracy and precision using tissue-segmentation for attenuation correction. We applied multiple thresholds to the CTs of 23 patients to classify tissues. For six of the 23 patients, MR images were also acquired. The MR fat/in-phase ratio images were used for fat segmentation. Segmented tissue classes were used to create attenuation maps, which were used for attenuation correction in PET reconstruction. PET bias images were then computed using the PET reconstructed with the original CT as the reference. We registered the CTs for all the patients and transformed the corresponding bias images accordingly. We then obtained the mean and standard deviation bias atlas using all the registered bias images. Our CT-based study shows that four-class segmentation (air, lungs, fat, other tissues), which is available on most PET-MR scanners, yields 15.1%, 4.1%, 6.6%, and 12.9% RMSE bias in lungs, fat, non-fat soft-tissues, and bones, respectively. An accurate fat identification is achievable using fat/in-phase MR images. Furthermore, we have found that three-class segmentation (air, lungs, other tissues) yields less than 5% standard deviation of bias within the heart, liver, and kidneys. This implies that three-class segmentation can be sufficient to achieve small variation of bias for imaging these three organs. Finally, we have found that inter- and intra-patient lung density variations contribute almost equally to the overall standard deviation of bias within the lungs.
authors: Center for Advanced Radiological Sciences, Division of Nuclear Medicine and Molecular Imaging, Massachusetts General Hospital, Boston; Harvard Medical School, Boston.
authors: Jinsong
authors: J
authors: Ouyang
authors: Massachusetts General Hospital and Harvard Medical School, Boston. He is now with School of Electrical and Computer Engineering, Ulsan National Institute of Science and Technology, Ulsan, Korea.
authors: Se Young
authors: SY
authors: Chun
authors: Center for Advanced Radiological Sciences, Division of Nuclear Medicine and Molecular Imaging, Massachusetts General Hospital, Boston; Laboratoire d'Imagerie Fonctionnelle, UMR-S 678, INSERM Univ. Pierre et Marie Curie, Paris, France.
authors: Yoann
authors: Y
authors: Petibon
authors: Center for Advanced Radiological Sciences, Division of Nuclear Medicine and Molecular Imaging, Massachusetts General Hospital, Boston; Harvard Medical School, Boston.
authors: Ali A
authors: AA
authors: Bonab
authors: Center for Advanced Radiological Sciences, Division of Nuclear Medicine and Molecular Imaging, Massachusetts General Hospital, Boston; Harvard Medical School, Boston.
authors: Nathaniel
authors: N
authors: Alpert
authors: Center for Advanced Radiological Sciences, Division of Nuclear Medicine and Molecular Imaging, Massachusetts General Hospital, Boston; Harvard Medical School, Boston.
authors: Georges El
authors: GE
authors: Fakhri
keywords: PET-MR; attenuation correction