title: Distance-based functional diversity measures and their decomposition: a framework based on Hill numbers.
abstract: Hill numbers (or the "effective number of species") are increasingly used to characterize species diversity of an assemblage. This work extends Hill numbers to incorporate species pairwise functional distances calculated from species traits. We derive a parametric class of functional Hill numbers, which quantify "the effective number of equally abundant and (functionally) equally distinct species" in an assemblage. We also propose a class of mean functional diversity (per species), which quantifies the effective sum of functional distances between a fixed species to all other species. The product of the functional Hill number and the mean functional diversity thus quantifies the (total) functional diversity, i.e., the effective total distance between species of the assemblage. The three measures (functional Hill numbers, mean functional diversity and total functional diversity) quantify different aspects of species trait space, and all are based on species abundance and species pairwise functional distances. When all species are equally distinct, our functional Hill numbers reduce to ordinary Hill numbers. When species abundances are not considered or species are equally abundant, our total functional diversity reduces to the sum of all pairwise distances between species of an assemblage. The functional Hill numbers and the mean functional diversity both satisfy a replication principle, implying the total functional diversity satisfies a quadratic replication principle. When there are multiple assemblages defined by the investigator, each of the three measures of the pooled assemblage (gamma) can be multiplicatively decomposed into alpha and beta components, and the two components are independent. The resulting beta component measures pure functional differentiation among assemblages and can be further transformed to obtain several classes of normalized functional similarity (or differentiation) measures, including N-assemblage functional generalizations of the classic Jaccard, Sørensen, Horn and Morisita-Horn similarity indices. The proposed measures are applied to artificial and real data for illustration.
authors.affiliation: Institute of Statistics, National Tsing Hua University, Hsin-Chu, Taiwan.
authors.forename: Chun-Huo
authors.initials: CH
authors.lastname: Chiu
authors.affiliation: Institute of Statistics, National Tsing Hua University, Hsin-Chu, Taiwan.
authors.forename: Anne
authors.initials: A
authors.lastname: Chao
mesh_terms: D000465:Algorithms; D044822:Biodiversity; D016000:Cluster Analysis; D004777:Environment; D010944:Plants / Q000145:classification; D013223:Statistics as Topic / Q000379:methods*