title: Impedimetric DNA detection--steps forward to sensorial application.
abstract: This study describes a label-free impedimetric sensor based on short ssDNA recognition elements for the detection of hybridization events. We concentrate on the elucidation of the influence of target length and recognition sequence position on the sensorial performance. The impedimetric measurements are performed in the presence of the redox system ferri-/ferrocyanide and show an increase in charge transfer resistance upon hybridization of ssDNA to the sensor surface. Investigations on the impedimetric signal stability demonstrate a clear influence of the buffers used during the sensor preparation and the choice of the passivating mercaptoalcanol compound. A stable sensor system has been developed, enabling a reproducible detection of 25mer target DNA in the low nanomolar range. After hybridization, a sensor regeneration can be reached with deionized water by adjustment of effective convection conditions, ensuring a sensor reusability. By investigations of longer targets with overhangs exposed to the solution, we can demonstrate applicability of the impedimetric detection for longer ssDNA. However, a decreasing charge transfer resistance change (ΔR(ct)) is found by extending the overhang. As a strategy to increase the impedance change for longer target strands, the position of the recognition sequence can be designed in a way that a small overhang is exposed to the electrode surface. This is found to result in an increase in the relative R(ct) change. These results suggest that DNA and consequently negative charge near the electrode possess a larger impact on the impedimetric signal than DNA further away.
authors.affiliation: Biosystems Technology, Institute of Applied Life Sciences, Technical University of Applied Sciences Wildau , Hochschulring 1, 15745 Wildau, Germany.
authors.forename: Marc
authors.initials: M
authors.lastname: Riedel
authors.forename: Julia
authors.initials: J
authors.lastname: Kartchemnik
authors.forename: Michael J
authors.initials: MJ
authors.lastname: Schöning
authors.forename: Fred
authors.initials: F
authors.lastname: Lisdat
mesh_terms: D001483:Base Sequence; D015374:Biosensing Techniques; D004277:DNA, Single-Stranded / Q000032:analysis*; D010084:Oxidation-Reduction
chemical_list: D004277:DNA, Single-Stranded