title: Automatic parameter estimation of multicompartmental neuron models via minimization of trace error with control adjustment.
abstract: We describe a new technique to fit conductance-based neuron models to intracellular voltage traces from isolated biological neurons. The biological neurons are recorded in current-clamp with pink (1/f) noise injected to perturb the activity of the neuron. The new algorithm finds a set of parameters that allows a multicompartmental model neuron to match the recorded voltage trace. Attempting to match a recorded voltage trace directly has a well-known problem: mismatch in the timing of action potentials between biological and model neuron is inevitable and results in poor phenomenological match between the model and data. Our approach avoids this by applying a weak control adjustment to the model to promote alignment during the fitting procedure. This approach is closely related to the control theoretic concept of a Luenberger observer. We tested this approach on synthetic data and on data recorded from an anterior gastric receptor neuron from the stomatogastric ganglion of the crab Cancer borealis. To test the flexibility of this approach, the synthetic data were constructed with conductance models that were different from the ones used in the fitting model. For both synthetic and biological data, the resultant models had good spike-timing accuracy.
authors.affiliation: Volen Center and Department of Biology, Brandeis University, Waltham, Massachusetts ted.brookings@googlemail.com.
authors.forename: Ted
authors.initials: T
authors.lastname: Brookings
authors.affiliation: Volen Center and Department of Biology, Brandeis University, Waltham, Massachusetts.
authors.forename: Marie L
authors.initials: ML
authors.lastname: Goeritz
authors.affiliation: Volen Center and Department of Biology, Brandeis University, Waltham, Massachusetts.
authors.forename: Eve
authors.initials: E
authors.lastname: Marder
mesh_terms: D000200:Action Potentials; D000465:Algorithms; D000818:Animals; D003386:Brachyura; D003627:Data Interpretation, Statistical; D008959:Models, Neurological; D009474:Neurons / Q000502:physiology*; D018408:Patch-Clamp Techniques / Q000379:methods*
keywords: conductance-based models; genetic algorithms; stomatogastric ganglion