title: Assembly and stability of Salmonella enterica ser. Typhi TolC protein in POPE and DMPE.
abstract: In this work we assessed the suitability of two different lipid membranes for the simulation of a TolC protein from Salmonella enterica serovar Typhi. The TolC protein family is found in many pathogenic Gram-negative bacteria including Vibrio cholera and Pseudomonas aeruginosa and acts as an outer membrane channel for expulsion of drug and toxin from the cell. In S. typhi, the causative agent for typhoid fever, the TolC outer membrane protein is an antigen for the pathogen. The lipid environment is an important modulator of membrane protein structure and function. We evaluated the conformation of the TolC protein in the presence of DMPE and POPE bilayers using molecular dynamics simulation. The S. typhi TolC protein exhibited similar conformational dynamics to TolC and its homologues. Conformational flexibility of the protein is seen in the C-terminal, extracellular loops, and α-helical region. Despite differences in the two lipids, significant similarities in the motion of the protein in POPE and DMPE were observed, including the rotational motion of the C-terminal residues and the partially open extracellular loops. However, analysis of the trajectories demonstrated effects of hydrophobic matching of the TolC protein in the membrane, particularly in the lengthening of the lipids and subtle movements of the protein's β-barrel towards the lower leaflet in DMPE. The study exhibited the use of molecular dynamics simulation in revealing the differential effect of membrane proteins and lipids on each other. In this study, POPE is potentially a more suitable model for future simulation of the S. typhi TolC protein.
authors.affiliation: Institute for Research in Molecular Medicine, Universiti Sains Malaysia, 11800, Minden, Pulau Pinang, Malaysia.
authors.forename: Siew Wen
authors.initials: SW
authors.lastname: Leong
authors.forename: Theam Soon
authors.initials: TS
authors.lastname: Lim
authors.forename: Gee Jun
authors.initials: GJ
authors.lastname: Tye
authors.forename: Asma
authors.initials: A
authors.lastname: Ismail
authors.forename: Ismail
authors.initials: I
authors.lastname: Aziah
authors.forename: Yee Siew
authors.initials: YS
authors.lastname: Choong
mesh_terms: D001425:Bacterial Outer Membrane Proteins / Q000737:chemistry* / Q000378:metabolism*; D056004:Molecular Dynamics Simulation; D010714:Phosphatidylethanolamines / Q000737:chemistry / Q000378:metabolism*; D011485:Protein Binding; D011487:Protein Conformation; D055550:Protein Stability; D012485:Salmonella typhi
chemical_list: D001425:Bacterial Outer Membrane Proteins; D010714:Phosphatidylethanolamines; C057561:1-palmitoyl-2-oleoylphosphatidylethanolamine; C018525:1,2-dimyristoylphosphatidylethanolamine