title: Synthesis and evaluation of chromogenic and fluorogenic substrates for high-throughput detection of enzymes that hydrolyze inorganic polyphosphate.
abstract: Inorganic polyphosphates, linear polymers of orthophosphate, occur naturally throughout biology and have many industrial applications. Their biodegradable nature makes them attractive for a multitude of uses, and it would be important to understand how polyphosphates are turned over enzymatically. Studies of inorganic polyphosphatases are, however, hampered by the lack of high-throughput methods for detecting and quantifying rates of polyphosphate degradation. We now report chromogenic and fluorogenic polyphosphate substrates that permit spectrophotometric monitoring of polyphosphate hydrolysis and allow for high-throughput analyses of both endopolyphosphatase and exopolyphosphatase activities, depending on assay configuration. These substrates contain 4-nitrophenol or 4-methylumbelliferone moieties that are covalently attached to the terminal phosphates of polyphosphate via phosphoester linkages formed during reactions mediated by EDAC (1-ethyl-3-(3-(dimethylamino)propyl)carbodiimide). This report identifies Nudt2 as an inorganic polyphosphatase and also adds to the known coupling chemistry for polyphosphates, permitting facile covalent linkage of alcohols with the terminal phosphates of inorganic polyphosphate.
authors.affiliation: Department of Biochemistry and §College of Medicine, University of Illinois at Urbana-Champaign , Urbana, Illinois 61801, United States.
authors.forename: Carleigh F F
authors.initials: CF
authors.lastname: Hebbard
authors.forename: Yan
authors.initials: Y
authors.lastname: Wang
authors.forename: Catherine J
authors.initials: CJ
authors.lastname: Baker
authors.forename: James H
authors.initials: JH
authors.lastname: Morrissey
mesh_terms: D017766:Acid Anhydride Hydrolases / Q000378:metabolism; D000469:Alkaline Phosphatase / Q000378:metabolism; D004063:Digestion; D005456:Fluorescent Dyes / Q000138:chemical synthesis* / Q000737:chemistry*; D006868:Hydrolysis; D009596:Nitrophenols / Q000737:chemistry; D011122:Polyphosphates / Q000737:chemistry*
chemical_list: D005456:Fluorescent Dyes; D009596:Nitrophenols; D011122:Polyphosphates; D000469:Alkaline Phosphatase; D017766:Acid Anhydride Hydrolases; C022563:endopolyphosphatase; C020137:exopolyphosphatase; C024836:4-nitrophenol