title: Temperature dependence of C-terminal carboxylic group IR absorptions in the amide I' region.
abstract: Studies of structural changes in peptides and proteins using IR spectroscopy often rely on subtle changes in the amide I' band as a function of temperature. However, these changes can be obscured by the overlap with other absorptions, namely the side-chain and terminal carboxylic groups. The former were the subject of our previous report (Anderson et al., 2014). In this paper we investigate the IR spectra of the asymmetric stretch of α-carboxylic groups for amino acids representing all major types (Gly, Ala, Val, Leu, Ser, Thr, Asp, Glu, Lys, Asn, His, Trp, Pro) as well as the C-terminal groups of three dipeptides (Gly-Gly, Gly-Ala, Ala-Gly) in D₂O at neutral pH. Experimental temperature dependent IR spectra were analyzed by fitting of both symmetric and asymmetric pseudo-Voigt functions. Qualitatively the spectra exhibit shifts to higher frequency, loss in intensity and narrowing with increased temperature, similar to that observed previously for the side-chain carboxylic groups of Asp. The observed dependence of the band parameters (frequency, intensity, width and shape) on temperature is in all cases linear: simple linear regression is therefore used to describe the spectral changes. The spectral parameters vary between individual amino acids and show systematic differences between the free amino acids and dipeptides, particularly in the absolute peak frequencies, but the temperature variations are comparable. The relative variations between the dipeptide spectral parameters are most sensitive to the C-terminal amino acid, and follow the trends observed in the free amino acid spectra. General rules for modeling the α-carboxylic IR absorption bands in peptides and proteins as the function of temperature are proposed.
authors.affiliation: University of Wyoming, 1000 E. University Ave, Laramie, WY 82071, United States.
authors.forename: Benjamin A
authors.initials: BA
authors.lastname: Anderson
authors.affiliation: University of Wyoming, 1000 E. University Ave, Laramie, WY 82071, United States.
authors.forename: Alex
authors.initials: A
authors.lastname: Literati
authors.affiliation: University of Wyoming, 1000 E. University Ave, Laramie, WY 82071, United States.
authors.forename: Borden
authors.initials: B
authors.lastname: Ball
authors.affiliation: University of Wyoming, 1000 E. University Ave, Laramie, WY 82071, United States. Electronic address: jkubelka@uwyo.edu.
authors.forename: Jan
authors.initials: J
authors.lastname: Kubelka
mesh_terms: D000577:Amides / Q000737:chemistry*; D000596:Amino Acids / Q000737:chemistry*; D002264:Carboxylic Acids / Q000737:chemistry*; D004151:Dipeptides / Q000737:chemistry*; D006033:Glycylglycine / Q000737:chemistry*; D013055:Spectrophotometry, Infrared; D013696:Temperature
chemical_list: D000577:Amides; D000596:Amino Acids; D002264:Carboxylic Acids; D004151:Dipeptides; D006033:Glycylglycine; C028872:alanylglycine; C065992:N-glycylalanine
keywords: Bandshape; Frequency; Infrared Spectroscopy; Intensity; Peptide; Protein