title: Complete chloroplast genome sequences of Praxelis (Eupatorium catarium Veldkamp), an important invasive species.
abstract: Praxelis (Eupatorium catarium Veldkamp) is a new hazardous invasive plant species that has caused serious economic losses and environmental damage in the Northern hemisphere tropical and subtropical regions. Although previous studies focused on detecting the biological characteristics of this plant to prevent its expansion, little effort has been made to understand the impact of Praxelis on the ecosystem in an evolutionary process. The genetic information of Praxelis is required for further phylogenetic identification and evolutionary studies. Here, we report the complete Praxelis chloroplast (cp) genome sequence. The Praxelis chloroplast genome is 151,410 bp in length including a small single-copy region (18,547 bp) and a large single-copy region (85,311 bp) separated by a pair of inverted repeats (IRs; 23,776 bp). The genome contains 85 unique and 18 duplicated genes in the IR region. The gene content and organization are similar to other Asteraceae tribe cp genomes. We also analyzed the whole cp genome sequence, repeat structure, codon usage, contraction of the IR and gene structure/organization features between native and invasive Asteraceae plants, in order to understand the evolution of organelle genomes between native and invasive Asteraceae. Comparative analysis identified the 14 markers containing greater than 2% parsimony-informative characters, indicating that they are potential informative markers for barcoding and phylogenetic analysis. Moreover, a sister relationship between Praxelis and seven other species in Asteraceae was found based on phylogenetic analysis of 28 protein-coding sequences. Complete cp genome information is useful for plant phylogenetic and evolutionary studies within this invasive species and also within the Asteraceae family.
authors.affiliation: College of life science, Hainan Normal University, Haikou 571158, China. Electronic address: Zhangyingred@yahoo.com.
authors.forename: Ying
authors.initials: Y
authors.lastname: Zhang
authors.affiliation: College of life science, Hainan Normal University, Haikou 571158, China.
authors.forename: Lei
authors.initials: L
authors.lastname: Li
authors.affiliation: College of life science, Hainan Normal University, Haikou 571158, China.
authors.forename: Ting Liang
authors.initials: TL
authors.lastname: Yan
authors.affiliation: College of life science, Hainan Normal University, Haikou 571158, China. Electronic address: hnsylq@163.com.
authors.forename: Qiang
authors.initials: Q
authors.lastname: Liu
mesh_terms: D019659:Asteraceae / Q000145:classification / Q000235:genetics; D060365:Chloroplast Proteins / Q000235:genetics* / Q000378:metabolism; D018742:DNA, Chloroplast / Q000235:genetics; D036602:Eupatorium / Q000145:classification* / Q000235:genetics* / Q000378:metabolism; D019143:Evolution, Molecular; D017343:Genes, Plant; D054628:Genome, Chloroplast; D018745:Genome, Plant; D018895:Microsatellite Repeats; D010802:Phylogeny; D018515:Plant Leaves / Q000235:genetics
chemical_list: D060365:Chloroplast Proteins; D018742:DNA, Chloroplast
keywords: Asteraceae; Chloroplast genome; Eupatorieae; Invasive; Praxelis