title: Accurate and computationally efficient prediction of thermochemical properties of biomolecules using the generalized connectivity-based hierarchy.
abstract: In this study we have used the connectivity-based hierarchy (CBH) method to derive accurate heats of formation of a range of biomolecules, 18 amino acids and 10 barbituric acid/uracil derivatives. The hierarchy is based on the connectivity of the different atoms in a large molecule. It results in error-cancellation reaction schemes that are automated, general, and can be readily used for a broad range of organic molecules and biomolecules. Herein, we first locate stable conformational and tautomeric forms of these biomolecules using an accurate level of theory (viz. CCSD(T)/6-311++G(3df,2p)). Subsequently, the heats of formation of the amino acids are evaluated using the CBH-1 and CBH-2 schemes and routinely employed density functionals or wave function-based methods. The calculated heats of formation obtained herein using modest levels of theory and are in very good agreement with those obtained using more expensive W1-F12 and W2-F12 methods on amino acids and G3 results on barbituric acid derivatives. Overall, the present study (a) highlights the small effect of including multiple conformers in determining the heats of formation of biomolecules and (b) in concurrence with previous CBH studies, proves that use of the more effective error-cancelling isoatomic scheme (CBH-2) results in more accurate heats of formation with modestly sized basis sets along with common density functionals or wave function-based methods.
authors: Department of Chemistry, Indiana University , Bloomington, Indiana 47405, United States.
authors: Arkajyoti
authors: A
authors: Sengupta
authors: Raghunath O
authors: RO
authors: Ramabhadran
authors: Krishnan
authors: K
authors: Raghavachari
mesh_terms: D000596:Amino Acids / Q000737:chemistry*; D001463:Barbiturates / Q000737:chemistry*; D011789:Quantum Theory; D013816:Thermodynamics; D014498:Uracil / Q000031:analogs & derivatives / Q000737:chemistry*
chemical_list: D000596:Amino Acids; D001463:Barbiturates; D014498:Uracil; C032232:barbituric acid