title: Toll-like receptor 22 in Labeo rohita: molecular cloning, characterization, 3D modeling, and expression analysis following ligands stimulation and bacterial infection.
abstract: Toll-like receptors (TLRs) are a class of innate immune receptors that sense pathogens or their molecular signatures and activate signaling cascades to induce a quick and non-specific immune response in the host. Among various types of TLRs, TLR22 is exclusively present in teleosts and amphibians and is expected to play the distinctive role in innate immunity. This report describes molecular cloning, three-dimensional (3D) modeling, and expression analysis of TLR22 in rohu (Labeo rohita), the most commercially important freshwater fish species in the Indian subcontinent. The open reading frame (ORF) of rohu TLR22 (LrTLR22) comprised of 2,838 nucleotides (nt), encoding 946 amino acid (aa) residues with the molecular mass of ∼ 107.6 kDa. The secondary structure of deduced LrTLR22 exhibited the presence of signal peptide (1-22 aa), 18 leucine-rich repeat (LRR) regions (79-736 aa), and TIR domain (792-935 aa). The 3D model of LrTLR22-LRR regions together elucidated the horse-shoe-shaped structure having parallel β-strands at the concave surface and few α-helices at the convex surface. The TIR domain structure revealed alternate presence of five α-helices and β-sheets. Phylogenetically, LrTLR22 was closely related to common carp and exhibited significant similarity (92.2 %) and identity (86.1 %) in their amino acids. In rohu, TLR22 was constitutively expressed in all embryonic developmental stages, and tissue-specific analysis illustrated its expression in all examined tissues, highest was in liver and lowest in brain. In vivo modulation of TLR22 gene expression was analyzed by quantitative real-time PCR (qRT-PCR) assay following stimulation with lipopolysaccharide (LPS), synthetic double stranded RNA (polyinosinic-polycytidylic acid), and bacterial (Aeromonas hydrophila) RNA. Among these ligands, bacterial RNA most significantly (p < 0.05) induced TLR22 gene expression in most of the tested tissues. In A. hydrophila infection, induction of TLR22 gene expression was also observed in majority of the tested tissues. Together, these data suggested that in addition to sensing other microbial signatures, TLR22 can recognize bacterial RNA and may play the important role in augmenting innate immunity in fish.
authors: Fish Health Management Division, Central Institute of Freshwater Aquaculture (CIFA), Kausalyaganga, Bhubaneswar, Orissa, 751002, India, msamanta1969@yahoo.com.
authors: Mrinal
authors: M
authors: Samanta
authors: Banikalyan
authors: B
authors: Swain
authors: Madhubanti
authors: M
authors: Basu
authors: Girishbala
authors: G
authors: Mahapatra
authors: Bikash R
authors: BR
authors: Sahoo
authors: Mahismita
authors: M
authors: Paichha
authors: Saswati S
authors: SS
authors: Lenka
authors: Pallipuram
authors: P
authors: Jayasankar
mesh_terms: D016980:Aeromonas hydrophila; D000818:Animals; D003001:Cloning, Molecular; D003530:Cyprinidae / Q000235:genetics / Q000276:immunology / Q000378:metabolism / Q000382:microbiology; D005393:Fish Diseases / Q000235:genetics / Q000276:immunology / Q000382:microbiology; D029941:Fish Proteins / Q000096:biosynthesis / Q000737:chemistry / Q000235:genetics / Q000276:immunology; D005786:Gene Expression Regulation / Q000235:genetics / Q000276:immunology; D008958:Models, Molecular; D017434:Protein Structure, Tertiary; D051193:Toll-Like Receptors / Q000096:biosynthesis / Q000737:chemistry / Q000235:genetics / Q000276:immunology
chemical_list: D029941:Fish Proteins; D051193:Toll-Like Receptors