title: Effects of benthic macrofauna bioturbation on the bacterial community composition in lake sediments.
abstract: Benthic macrofauna are considered to be an important part of the lacustrine ecosystem, and bioturbation may greatly affect the biogeochemical processes and microbial activities in sediments. In the present study, the bacterial community composition in sediments inhabited by 3 different types of benthic macrofauna (Corbicula fluminea, Chironomidae larvae, and tubificid worms) in the shallow and eutrophic Lake Taihu was studied to investigate the different effects of bioturbation on the composition of these communities. Microcosms were constructed, and culture-independent methods, including terminal restriction fragment length polymorphism (T-RFLP) and clone library analysis, were performed to evaluate the bacterial communities. Analysis of similarities (ANOSIM) and multidimensional scaling (MDS) analysis of T-RFLP patterns demonstrated that differences in the bacterial community composition between the control and the macrofauna-inhabited sediments were not as great as expected, although the chemical properties of the sediments changed remarkably. Nevertheless, the dominant bacterial group in each type of macrofauna-inhabited sediment was different. Acidobacteria, Betaproteobacteria, and Deltaproteobacteria were the dominant bacterial groups in sediments inhabited by C. fluminea, tubificid worms, and Chironomidae larvae, respectively. The data obtained in this study are helpful for understanding the effects of bioturbation in a shallow, eutrophic lake.
authors: a State Key Laboratory of Lake Science and Environment, Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences, Nanjing 210008, People's Republic of China.
authors: Jin
authors: J
authors: Zeng
authors: Da-Yong
authors: DY
authors: Zhao
authors: Peng
authors: P
authors: Liu
authors: Zhong-Bo
authors: ZB
authors: Yu
authors: Rui
authors: R
authors: Huang
authors: Qinglong L
authors: QL
authors: Wu
mesh_terms: D061271:Acidobacteria / Q000235:genetics*; D000818:Animals; D000845:Annelida / Q000382:microbiology; D020562:Betaproteobacteria / Q000235:genetics*; D002683:Chironomidae / Q000382:microbiology; D049874:Corbicula / Q000382:microbiology; D020564:Deltaproteobacteria / Q000235:genetics*; D017753:Ecosystem; D005798:Genes, Bacterial; D019015:Geologic Sediments / Q000382:microbiology*; D060106:Lakes / Q000382:microbiology*; D007814:Larva / Q000382:microbiology; D058889:Molecular Typing; D010802:Phylogeny; D012150:Polymorphism, Restriction Fragment Length; D012336:RNA, Ribosomal, 16S / Q000235:genetics
chemical_list: D012336:RNA, Ribosomal, 16S
keywords: bacterial community; benthic macrofauna; bioturbation; communauté bactérienne; macrofaune benthique; sediment; sédiment