title: Integrative analysis of ocular complications in atherosclerosis unveils pathway convergence and crosstalk.
abstract: Atherosclerosis is a life-threatening disease and a major cause of mortalities worldwide. While many of the atherosclerotic sequelae are reflected as microvascular effects in the eye, the molecular mechanisms of their development is not yet known. In this study, we employed a systems biology approach to unveil the most significant events and key molecular mediators of ophthalmic sequelae caused by atherosclerosis. Literature mining was used to identify the proteins involved in both atherosclerosis and ophthalmic diseases. A protein-protein interaction (PPI) network was prepared using the literature-mined seed nodes. Network topological analysis was carried out using Cytoscape, while network nodes were annotated using database for annotation, visualization and integrated discovery in order to identify the most enriched pathways and processes. Network analysis revealed that mitogen-activated protein kinase 1 (MAPK1) and protein kinase C occur with highest betweenness centrality, degree and closeness centrality, thus reflecting their functional importance to the network. Our analysis shows that atherosclerosis-associated ophthalmic complications are caused by the convergence of neurotrophin signaling pathways, multiple immune response pathways and focal adhesion pathway on the MAPK signaling pathway. The PPI network shares features with vasoregression, a process underlying multiple vascular eye diseases. Our study presents a first clear and composite picture of the components and crosstalk of the main pathways of atherosclerosis-induced ocular diseases. The hub bottleneck nodes highlight the presence of molecules important for mediating the ophthalmic complications of atherosclerosis and contain five established drug targets for future therapeutic modulation efforts.
authors: Division of Biotechnology, Netaji Subhas Institute of Technology , New Delhi , India.
authors: Akanksha
authors: A
authors: Gupta
authors: Pallavi
authors: P
authors: Mohanty
authors: Sonika
authors: S
authors: Bhatnagar
mesh_terms: D050197:Atherosclerosis / Q000150:complications / Q000235:genetics* / Q000378:metabolism / Q000473:pathology; D016208:Databases, Factual; D005128:Eye Diseases / Q000209:etiology / Q000235:genetics* / Q000473:pathology; D053263:Gene Regulatory Networks; D006801:Humans; D019950:Mitogen-Activated Protein Kinase 1 / Q000235:genetics / Q000378:metabolism*; D009414:Nerve Growth Factors / Q000235:genetics / Q000378:metabolism; D060066:Protein Interaction Maps / Q000235:genetics; D011493:Protein Kinase C / Q000235:genetics / Q000378:metabolism; D015398:Signal Transduction; D049490:Systems Biology
chemical_list: D009414:Nerve Growth Factors; D011493:Protein Kinase C; C535150:MAPK1 protein, human; D019950:Mitogen-Activated Protein Kinase 1
keywords: Annotation; cardiovascular disease; literature mining; ophthalmic disease; protein–protein interaction network; vasoregression