title: The SIENA/FSL whole brain atrophy algorithm is no more reproducible at 3T than 1.5 T for Alzheimer's disease.
abstract: The back-to-back (BTB) acquisition of MP-RAGE MRI scans of the Alzheimer׳s Disease Neuroimaging Initiative (ADNI1) provides an excellent data set with which to check the reproducibility of brain atrophy measures. As part of ADNI1, 131 subjects received BTB MP-RAGEs at multiple time points and two field strengths of 3T and 1.5 T. As a result, high quality data from 200 subject-visit-pairs was available to compare the reproducibility of brain atrophies measured with FSL/SIENA over 12 to 18 month intervals at both 3T and 1.5 T. Although several publications have reported on the differing performance of brain atrophy measures at 3T and 1.5 T, no formal comparison of reproducibility has been published to date. Another goal was to check whether tuning SIENA options, including -B, -S, -R and the fractional intensity threshold (f) had a significant impact on the reproducibility. The BTB reproducibility for SIENA was quantified by the 50th percentile of the absolute value of the difference in the percentage brain volume change (PBVC) for the BTB MP-RAGES. At both 3T and 1.5 T the SIENA option combination of "-B f=0.2", which is different from the default values of f=0.5, yielded the best reproducibility as measured by the 50th percentile yielding 0.28 (0.23-0.39)% and 0.26 (0.20-0.32)%. These results demonstrated that in general 3T had no advantage over 1.5 T for the whole brain atrophy measure - at least for SIENA. While 3T MRI is superior to 1.5 T for many types of measurements, and thus worth the additional cost, brain atrophy measurement does not seem to be one of them.
authors.affiliation: Department of Physics and Medical Technology, VU University medical center, Amsterdam, The Netherlands. Electronic address: Keith@kscover.ca.
authors.forename: Keith S
authors.initials: KS
authors.lastname: Cover
authors.affiliation: Department of Radiology, VU University medical center, Amsterdam, The Netherlands.
authors.forename: Ronald A
authors.initials: RA
authors.lastname: van Schijndel
authors.affiliation: Department of Radiology, VU University medical center, Amsterdam, The Netherlands.
authors.forename: Veronica
authors.initials: V
authors.lastname: Popescu
authors.affiliation: Department of Physics and Medical Technology, VU University medical center, Amsterdam, The Netherlands.
authors.forename: Bob W
authors.initials: BW
authors.lastname: van Dijk
authors.affiliation: Laboratory of Epidemiology & Neuroimaging, IRCCS San Giovanni di Dio Fatebenefratelli, Via Pilastroni 4, 25125 Brescia, Italy.
authors.forename: Alberto
authors.initials: A
authors.lastname: Redolfi
authors.affiliation: Department of Epidemiology and Biostatistics, VU University medical center, Amsterdam, The Netherlands.
authors.forename: Dirk L
authors.initials: DL
authors.lastname: Knol
authors.affiliation: Laboratory of Epidemiology & Neuroimaging, IRCCS San Giovanni di Dio Fatebenefratelli, Via Pilastroni 4, 25125 Brescia, Italy.
authors.forename: Giovanni B
authors.initials: GB
authors.lastname: Frisoni
authors.affiliation: Department of Radiology, VU University medical center, Amsterdam, The Netherlands; MS Center Amsterdam and Alzheimer Center, VU University medical center, Amsterdam, The Netherlands.
authors.forename: Frederik
authors.initials: F
authors.lastname: Barkhof
authors.affiliation: Department of Physics and Medical Technology, VU University medical center, Amsterdam, The Netherlands; Department of Radiology, VU University medical center, Amsterdam, The Netherlands; MS Center Amsterdam and Alzheimer Center, VU University medical center, Amsterdam, The Netherlands.
authors.forename: Hugo
authors.initials: H
authors.lastname: Vrenken
mesh_terms: D000465:Algorithms; D000544:Alzheimer Disease / Q000473:pathology*; D001284:Atrophy; D001921:Brain / Q000473:pathology*; D006801:Humans; D008279:Magnetic Resonance Imaging / Q000379:methods; D008297:Male; D015203:Reproducibility of Results
keywords: Alzheimer׳s; Back-to-back; Brain atrophy; FSL; Reproducibility׳