title: The phylogenetic utility of acetyltransferase (ARD1) and glutaminyl tRNA synthetase (QtRNA) for reconstructing Cenozoic relationships as exemplified by the large Australian cicada Pauropsalta generic complex.
abstract: The Pauropsalta generic complex is a large group of cicadas (72 described spp.; >82 undescribed spp.) endemic to Australia. No previous molecular work on deep level relationships within this complex has been conducted, but a recent morphological revision and phylogenetic analysis proposed relationships among the 11 genera. We present here the first comprehensive molecular phylogeny of the complex using five loci (1 mtDNA, 4 nDNA), two of which are from nuclear genes new to cicada systematics. We compare the molecular phylogeny to the morphological phylogeny. We evaluate the phylogenetic informativeness of the new loci to traditional cicada systematics loci to generate a baseline of performance and behavior to aid in gene choice decisions in future systematic and phylogenomic studies. Our maximum likelihood and Bayesian inference phylogenies strongly support the monophyly of most of the newly described genera; however, relationships among genera differ from the morphological phylogeny. A comparison of phylogenetic informativeness among all loci revealed that COI 3rd positions dominate the informativeness profiles relative to all other loci but exhibit some among taxon nucleotide bias. After removing COI 3rd positions, COI 1st positions dominate near the terminals, while the period intron has the most phylogenetic informativeness near the root. Among the nuclear loci, ARD1 and QtRNA have lower phylogenetic informativeness than period intron and elongation factor 1 alpha intron, but the informativeness increases at you move from the tips to the root. The increase in phylogenetic informativeness deeper in the tree suggests these loci may be useful for resolving older relationships.
authors.affiliation: University of Connecticut, Department of Ecology and Evolutionary Biology, 75 N. Eagleville Road, Unit 3043, Storrs, CT 06269-3043, United States. Electronic address: clowen@gwu.edu.
authors.forename: Christopher L
authors.initials: CL
authors.lastname: Owen
authors.affiliation: University of Connecticut, Department of Ecology and Evolutionary Biology, 75 N. Eagleville Road, Unit 3043, Storrs, CT 06269-3043, United States.
authors.forename: David C
authors.initials: DC
authors.lastname: Marshall
authors.affiliation: University of Connecticut, Department of Ecology and Evolutionary Biology, 75 N. Eagleville Road, Unit 3043, Storrs, CT 06269-3043, United States.
authors.forename: Kathy B R
authors.initials: KB
authors.lastname: Hill
authors.affiliation: University of Connecticut, Department of Ecology and Evolutionary Biology, 75 N. Eagleville Road, Unit 3043, Storrs, CT 06269-3043, United States.
authors.forename: Chris
authors.initials: C
authors.lastname: Simon
mesh_terms: D000123:Acetyltransferases / Q000235:genetics*; D000604:Amino Acyl-tRNA Synthetases / Q000235:genetics*; D000818:Animals; D001315:Australia; D001499:Bayes Theorem; D004272:DNA, Mitochondrial / Q000235:genetics; D006430:Hemiptera / Q000145:classification* / Q000201:enzymology / Q000235:genetics; D016013:Likelihood Functions; D010802:Phylogeny; D017422:Sequence Analysis, DNA
chemical_list: D004272:DNA, Mitochondrial; D000123:Acetyltransferases; D000604:Amino Acyl-tRNA Synthetases; C020659:glutaminyl-tRNA synthetase
keywords: Australia; Cicadettini; Cicadidae; Informativeness; Pauropsalta; Phylogeny