title: Mining whole genomes and transcriptomes of Jatropha (Jatropha curcas) and Castor bean (Ricinus communis) for NBS-LRR genes and defense response associated transcription factors.
abstract: Jatropha (Jatropha curcas L.) and Castor bean (Ricinus communis) are oilseed crops of family Euphorbiaceae with the potential of producing high quality biodiesel and having industrial value. Both the bioenergy plants are becoming susceptible to various biotic stresses directly affecting the oil quality and content. No report exists as of today on analysis of Nucleotide Binding Site-Leucine Rich Repeat (NBS-LRR) gene repertoire and defense response transcription factors in both the plant species. In silico analysis of whole genomes and transcriptomes identified 47 new NBS-LRR genes in both the species and 122 and 318 defense response related transcription factors in Jatropha and Castor bean, respectively. The identified NBS-LRR genes and defense response transcription factors were mapped onto the respective genomes. Common and unique NBS-LRR genes and defense related transcription factors were identified in both the plant species. All NBS-LRR genes in both the species were characterized into Toll/interleukin-1 receptor NBS-LRRs (TNLs) and coiled-coil NBS-LRRs (CNLs), position on contigs, gene clusters and motifs and domains distribution. Transcript abundance or expression values were measured for all NBS-LRR genes and defense response transcription factors, suggesting their functional role. The current study provides a repertoire of NBS-LRR genes and transcription factors which can be used in not only dissecting the molecular basis of disease resistance phenotype but also in developing disease resistant genotypes in Jatropha and Castor bean through transgenic or molecular breeding approaches.
authors.affiliation: Department of Biotechnology & Bioinformatics, Jaypee University of Information Technology, Waknaghat, Solan, 173 215, H.P., India.
authors.forename: Archit
authors.initials: A
authors.lastname: Sood
authors.forename: Varun
authors.initials: V
authors.lastname: Jaiswal
authors.forename: Sree Krishna
authors.initials: SK
authors.lastname: Chanumolu
authors.forename: Nikhil
authors.initials: N
authors.lastname: Malhotra
authors.forename: Tarun
authors.initials: T
authors.lastname: Pal
authors.forename: Rajinder Singh
authors.initials: RS
authors.lastname: Chauhan
mesh_terms: D001665:Binding Sites / Q000235:genetics*; D002874:Chromosome Mapping; D060467:Disease Resistance / Q000235:genetics*; D020869:Gene Expression Profiling; D018745:Genome, Plant / Q000235:genetics*; D031286:Jatropha / Q000235:genetics*; D007930:Leucine; D017472:Receptors, Interleukin-1 / Q000235:genetics; D020449:Repetitive Sequences, Amino Acid / Q000235:genetics*; D012278:Ricinus / Q000235:genetics*; D014157:Transcription Factors / Q000235:genetics*
chemical_list: D017472:Receptors, Interleukin-1; D014157:Transcription Factors; D007930:Leucine
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