title: The giraffe (Giraffa camelopardalis) rumen microbiome.
abstract: Recent studies have shown that wild ruminants are sources of previously undescribed microorganisms, knowledge of which can improve our understanding of the complex microbial interactions in the foregut. Here, we investigated the microbial community of seven wild-caught giraffes (Giraffa camelopardalis), three of which were fed natural browse and four were fed Boskos pellets, leafy alfalfa hay, and cut savanna browse, by characterizing the 16S rRNA gene diversity using 454 FLX high-throughput sequencing. The microbial community composition varied according to diet, but differed little between the ruminal fluid and solid fraction. The giraffe rumen contained large levels of the phyla of Firmicutes and Bacteroidetes independent of diet, while Prevotella, Succinclasticium, and Methanobrevibacter accounted for the largest abundant taxonomic assigned genera. However, up to 21% of the generated sequences could not been assigned to any known bacterial phyla, and c. 70% not to genus, revealing that the giraffe rumen hosts a variety of previously undescribed bacteria.
authors.affiliation: Department of Biology, Microbiology, University of Copenhagen, Copenhagen O, Denmark.
authors.forename: Michael
authors.initials: M
authors.lastname: Roggenbuck
authors.forename: Cathrine
authors.initials: C
authors.lastname: Sauer
authors.forename: Morten
authors.initials: M
authors.lastname: Poulsen
authors.forename: Mads F
authors.initials: MF
authors.lastname: Bertelsen
authors.forename: Søren J
authors.initials: SJ
authors.lastname: Sørensen
mesh_terms: D000818:Animals; D001105:Archaea / Q000145:classification / Q000235:genetics / Q000302:isolation & purification; D001419:Bacteria / Q000145:classification* / Q000235:genetics / Q000302:isolation & purification; D041963:Bacteroidetes / Q000235:genetics / Q000302:isolation & purification; D004032:Diet; D064307:Microbiota; D012336:RNA, Ribosomal, 16S / Q000235:genetics; D012417:Rumen / Q000382:microbiology*; D012418:Ruminants / Q000382:microbiology*
chemical_list: D012336:RNA, Ribosomal, 16S
keywords: diet; giraffe; microbiome; rumen; wild life