title: Isotope effects for deuterium transfer and mutagenesis of Tyr187 provide insight into controlled radical chemistry in adenosylcobalamin-dependent ornithine 4,5-aminomutase.
abstract: Adenosylcobalamin-dependent ornithine 4,5-aminomutase (OAM) from Clostridium sticklandii utilizes pyridoxal 5'-phosphate (PLP) to interconvert d-ornithine to 2,4-diaminopentanoate via a multistep mechanism that involves two hydrogen transfer steps. Herein, we uncover features of the OAM catalytic mechanism that differentiate it from its homologue, the more catalytically promiscuous lysine 5,6-aminomutase. Kinetic isotope effects (KIEs) with dl-ornithine-3,3,4,4,5,5-d6 revealed a diminished (D)kcat/Km of 2.5 ± 0.4 relative to a (D)kcat of 7.6 ± 0.5, suggesting slow release of the substrate from the active site. In contrast, a KIE was not observed on the rate constant associated with Co-C bond homolysis as this step is likely "gated" by the formation of the external aldimine. The role of tyrosine 187, which lies planar to the PLP pyridine ring, was also investigated via site-directed mutagenesis. The 25- and 1260-fold reduced kcat values for Y187F and Y187A, respectively, are attributed to a slower rate of external aldimine formation and a diminution of adenosylcobalamin Co-C bond homolysis. Notably, electron paramagnetic resonance studies of Y187F suggest that the integrity of the active site is maintained as cob(II)alamin and the PLP organic radical (even at lower concentrations) remain tightly exchange-coupled. Modeling of d-lysine and l-β-lysine into the 5,6-LAM active site reveals interactions between the substrate and protein are weaker than those in OAM and fewer in number. The combined data suggest that the level of protein-substrate interactions in aminomutases not only influences substrate specificity, but also controls radical chemistry.
authors.affiliation: Department of Chemistry, University of British Columbia , 3333 University Way, Kelowna, BC V1V 1V7, Canada.
authors.forename: Caitlyn
authors.initials: C
authors.lastname: Makins
authors.forename: Doug A
authors.initials: DA
authors.lastname: Whitelaw
authors.forename: Changhua
authors.initials: C
authors.lastname: Mu
authors.forename: Charles J
authors.initials: CJ
authors.lastname: Walsby
authors.forename: Kirsten R
authors.initials: KR
authors.lastname: Wolthers
mesh_terms: D020134:Catalytic Domain; D047991:Acetoanaerobium sticklandii / Q000201:enzymology; D003903:Deuterium; D004578:Electron Spin Resonance Spectroscopy; D019751:Intramolecular Transferases / Q000737:chemistry* / Q000235:genetics / Q000302:isolation & purification / Q000378:metabolism*; D007700:Kinetics; D008958:Models, Molecular; D016297:Mutagenesis, Site-Directed; D011487:Protein Conformation; D014443:Tyrosine / Q000235:genetics
chemical_list: D014443:Tyrosine; D003903:Deuterium; D019751:Intramolecular Transferases; C021913:ornithine 5,4-aminomutase