title: Computational screening and molecular dynamic simulation of breast cancer associated deleterious non-synonymous single nucleotide polymorphisms in TP53 gene.
abstract: Breast cancer is one of the most common cancers among the women around the world. Several genes are known to be responsible for conferring the susceptibility to breast cancer. Among them, TP53 is one of the major genetic risk factor which is known to be mutated in many of the breast tumor types. TP53 mutations in breast cancer are known to be related to a poor prognosis and chemo resistance. This renders them as a promising molecular target for the treatment of breast cancer. In this study, we present a computational based screening and molecular dynamic simulation of breast cancer associated deleterious non-synonymous single nucleotide polymorphisms in TP53. We have predicted three deleterious coding non-synonymous single nucleotide polymorphisms rs11540654 (R110P), rs17849781 (P278A) and rs28934874 (P151T) in TP53 with a phenotype in breast tumors using computational tools SIFT, Polyphen-2 and MutDB. We have performed molecular dynamics simulations to study the structural and dynamic effects of these TP53 mutations in comparison to the wild-type protein. Results from our simulations revealed a detailed consequence of the mutations on the p53 DNA-binding core domain that may provide insight for therapeutic approaches in breast cancer.
authors.affiliation: Department of Zoology, Sri Venkateswara University, Tirupati, Andhra Pradesh, India.
authors.forename: Kumaraswamy Naidu
authors.initials: KN
authors.lastname: Chitrala
authors.affiliation: Department of Zoology, Sri Venkateswara University, Tirupati, Andhra Pradesh, India.
authors.forename: Suneetha
authors.initials: S
authors.lastname: Yeguvapalli
mesh_terms: D001943:Breast Neoplasms / Q000235:genetics* / Q000473:pathology; D019295:Computational Biology / Q000379:methods*; D005260:Female; D006801:Humans; D008958:Models, Molecular; D056004:Molecular Dynamics Simulation; D010641:Phenotype; D020641:Polymorphism, Single Nucleotide / Q000235:genetics*; D025341:Principal Component Analysis; D016159:Tumor Suppressor Protein p53 / Q000235:genetics*
chemical_list: C495901:TP53 protein, human; D016159:Tumor Suppressor Protein p53
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