title: Multiscale dynamics of semiflexible polymers from a universal coarse-graining procedure.
abstract: Simulating the dynamics of a semiflexible polymer across time and length scales that bridge the rigid and flexible regimes requires a physically sound method for generating coarse-grained representations of the polymer. Here, we study the dynamic behavior of the discrete stretchable, shearable wormlike chain model, which can be used to coarse-grain a continuous semi-elastic chain at an arbitrary discretization. We show that the dynamics of this universal model match those of the wormlike chain at length scales above the discretization length. The evolution of the stress correlation, as probed through Brownian dynamics simulations, is found to reproduce the predicted behavior in both the rigid and flexible regimes, spanning over six orders of magnitude in time scales. The coarse-graining approach employed here thus enables dynamic simulation of semiflexible polymers at lengths and times that were previously inaccessible with conventional methods.
authors.affiliation: Chemical Engineering Department, Stanford University, Stanford, California 94305, USA.
authors.forename: Elena F
authors.initials: EF
authors.lastname: Koslover
authors.affiliation: Chemical Engineering Department, Stanford University, Stanford, California 94305, USA and Biophysics Program, Stanford University, Stanford, California 94305, USA.
authors.forename: Andrew J
authors.initials: AJ
authors.lastname: Spakowitz
mesh_terms: D055595:Mechanical Phenomena; D008968:Molecular Conformation; D056004:Molecular Dynamics Simulation; D011108:Polymers / Q000737:chemistry*; D013314:Stress, Mechanical
chemical_list: D011108:Polymers