title: ATF3 and extracellular matrix-related genes associated with the process of chronic obstructive pulmonary.
abstract: BACKGROUND
  Chronic obstructive pulmonary disease (COPD) is a major public health problem worldwide and is proved to be the number three cause of death in globally. The objective of this study was to explore the molecular mechanism of the progression of COPD.
  
  
  METHODS
  Using the GSE1650 affymetrix microarray data accessible from Gene Expression Omnibus database, we first identified the differentially expressed genes (DEGs) between 18 COPD samples and 12 normal samples, followed by the GO / KEGG pathway analysis and gene interaction networks analysis of the DEGs. Our study identified 134 DEGs which involved in regulation of immune response, vesicle transport system, growth regulator and extracellular matrix (ECM)-related pathways.
  
  
  RESULTS
  Gene interaction networks analysis showed that the sub-network involved by activating transcription factor-3 (ATF3) was the most significant sub-network in gene interaction networks. Furthermore, the investigation of extracellular matrix-related genes showed that genes like collagen and insulin-like growth factor binding protein could clearly distinguish the COPD and normal control.
  
  
  CONCLUSIONS
  The genes regulated by ATF3 transcriptional activator as well as ECM-related genes may play an important role in the process of COPD. Our study provides a comprehensive bioinformatics analysis of genes and pathways which may be involved in the progression of COPD.
authors.affiliation: Department of Respiratory and Critical Care Medicine, Fuzhou General Hospital of Nanjing Command, PLA, 156 Xihuan Bei Road, Fuzhou, 350025, China.
authors.forename: Jia
authors.initials: J
authors.lastname: Ye
authors.forename: Li
authors.initials: L
authors.lastname: Wen
authors.forename: De-Ling
authors.initials: DL
authors.lastname: Liu
authors.forename: Guo-xiang
authors.initials: GX
authors.lastname: Lai
mesh_terms: D051700:Activating Transcription Factor 3 / Q000235:genetics*; D016022:Case-Control Studies; D018450:Disease Progression; D005109:Extracellular Matrix / Q000235:genetics*; D005260:Female; D020869:Gene Expression Profiling; D005786:Gene Expression Regulation; D053263:Gene Regulatory Networks; D006801:Humans; D008297:Male; D020411:Oligonucleotide Array Sequence Analysis; D011379:Prognosis; D029424:Pulmonary Disease, Chronic Obstructive / Q000235:genetics* / Q000503:physiopathology*; D012016:Reference Values; D018570:Risk Assessment; D012720:Severity of Illness Index
chemical_list: D051700:Activating Transcription Factor 3