title: Genetic diversity of the Chinese liver fluke Clonorchis sinensis from Russia and Vietnam.
abstract: Clonorchiasis is a parasitic disease of high public health importance in many countries in southeastern Asia and is caused by the Chinese liver fluke Clonorchis sinensis. However, the genetic structure and demographic history of its populations has not been sufficiently studied throughout the geographic range of the species and available data are based mainly on partial gene sequencing. In this study, we explored the genetic diversity of the complete 1560 bp cytochrome c oxidase subunit 1 (cox1) gene sequence for geographically isolated C. sinensis populations in Russia and Vietnam, to our knowledge for the first time. The results demonstrated low nucleotide and high haplotype differentiation within and between the two compared regions and a clear geographical vector for the distribution of genetic diversity patterns among the studied populations. These results suggest a deep local adaptation of the parasite to its environment including intermediate hosts and the existence of gene flow across the species' range. Additionally, we have predicted an amino acid substitution in the functional site of the COX1 protein among the Vietnamese populations, which were reported to be difficult to treat with praziquantel. The haplotype networks consisted of several region-specific phylogenetic lineages, the formation of which could have occurred during the most extensive penultimate glaciations in the Pleistocene Epoch. The patterns of genetic diversity and demographics are consistent with population growth of the liver fluke in the late Pleistocene following the Last Glacial Maximum, indicating the lack of a population bottleneck during the recent past in the species' history. The data obtained have important implications for understanding the phylogeography of C. sinensis, its host-parasite interactions, the ability of this parasite to evolve drug resistance, and the epidemiology of clonorchiasis under global climate change.
authors.affiliation: Institute of Biology and Soil Science, Far Eastern Branch, Russian Academy of Sciences, 100-letiya Street, 159, Vladivostok 690022, Russia. Electronic address: chelomina@ibss.dvo.ru.
authors.forename: Galina N
authors.initials: GN
authors.lastname: Chelomina
authors.affiliation: Institute of Biology and Soil Science, Far Eastern Branch, Russian Academy of Sciences, 100-letiya Street, 159, Vladivostok 690022, Russia.
authors.forename: Yulia V
authors.initials: YV
authors.lastname: Tatonova
authors.affiliation: Institute of Ecology and Biological Resources, Vietnam Academy of Science and Technology, 18 Hoang Quoc Viet Street, Cau Giay Dist., Hanoi, Viet Nam.
authors.forename: Nguyen Manh
authors.initials: NM
authors.lastname: Hung
authors.affiliation: Institute of Ecology and Biological Resources, Vietnam Academy of Science and Technology, 18 Hoang Quoc Viet Street, Cau Giay Dist., Hanoi, Viet Nam.
authors.forename: Ha Duy
authors.initials: HD
authors.lastname: Ngo
mesh_terms: D000818:Animals; D001483:Base Sequence; D003003:Clonorchiasis / Q000453:epidemiology / Q000469:parasitology*; D003004:Clonorchis sinensis / Q000235:genetics*; D018509:DNA, Helminth / Q000235:genetics; D014644:Genetic Variation; D008297:Male; D010802:Phylogeny; D051381:Rats; D017207:Rats, Sprague-Dawley; D012426:Russia / Q000453:epidemiology; D014744:Vietnam / Q000453:epidemiology
chemical_list: D018509:DNA, Helminth
keywords: COX1; Clonorchis sinensis; Genetic diversity; Intraspecific phylogeny; cox1 gene