title: Identification of floral genes for sex determination in Calamus palustris Griff. by using suppression subtractive hybridization.
abstract: Calamus palustris Griff. is an economically important dioecious rattan species in Southeast Asia. However, dioecy and onset of flowering at 3-4 years old render uncertainties in desired female:male seedling ratios to establish a productive seed orchard for this rattan species. We constructed a subtractive library for male floral tissue to understand the genetic mechanism for gender determination in C. palustris. The subtractive library produced 1536 clones with 1419 clones of high quality. Reverse Northern screening showed 313 clones with differential expression, and sequence analyses clustered them into 205 unigenes, including 32 contigs and 173 singletons. The subtractive library was further validated with reverse transcription-quantitative polymerase chain reaction analysis. Homology identification classified the unigenes into 12 putative functional proteins with 83% unigenes showing significant match to proteins in databases. Functional annotations of these unigenes revealed genes involved in male flower development, including MADS-box genes, pollen-related genes, phytohormones for flower development, and male flower organ development. Our results showed that the male floral genes may play a vital role in sex determination in C. palustris. The identified genes can be exploited to understand the molecular basis of sex determination in C. palustris.
authors.affiliation: School of Environmental and Natural Resource Sciences, Faculty of Science and Technology, Universiti Kebangsaan Malaysia, UKM Bangi, Selangor, Malaysia.
authors.forename: C Y
authors.initials: CY
authors.lastname: Ng
authors.affiliation: School of Environmental and Natural Resource Sciences, Faculty of Science and Technology, Universiti Kebangsaan Malaysia, UKM Bangi, Selangor, Malaysia.
authors.forename: R
authors.initials: R
authors.lastname: Wickneswari
authors.affiliation: School of Environmental and Natural Resource Sciences, Faculty of Science and Technology, Universiti Kebangsaan Malaysia, UKM Bangi, Selangor, Malaysia cychoong@ukm.edu.my.
authors.forename: C Y
authors.initials: CY
authors.lastname: Choong
mesh_terms: D031081:Calamus / Q000235:genetics*; D019295:Computational Biology; D018076:DNA, Complementary / Q000235:genetics; D035264:Flowers / Q000235:genetics*; D018506:Gene Expression Regulation, Plant; D015723:Gene Library; D017343:Genes, Plant; D066251:Subtractive Hybridization Techniques
chemical_list: D018076:DNA, Complementary