title: Genetic diversity of porcine group A rotavirus strains in the UK.
abstract: Rotavirus is endemic in pig farms where it causes a loss in production. This study is the first to characterise porcine rotavirus circulating in UK pigs. Samples from diarrheic pigs with rotavirus enteritis obtained between 2010 and 2012 were genotyped in order to determine the diversity of group A rotavirus (GARV) in UK pigs. A wide range of rotavirus genotypes were identified in UK pigs: six G types (VP7); G2, G3, G4, G5, G9 and G11 and six P types (VP4); P[6], P[7], P[8], P[13], P[23], and P[32]. With the exception of a single P[8] isolate, there was less than 95% nucleotide identity between sequences from this study and any available rotavirus sequences. The G9 and P[6] genotypes are capable of infecting both humans and pigs, but showed no species cross-over within the UK as they were shown to be genetically distinct, which suggested zoonotic transmission is rare within the UK. We identified the P[8] genotype in one isolate, this genotype is almost exclusively found in humans. The P[8] was linked to a human Irish rotavirus isolate in the same year. The discovery of human genotype P[8] rotavirus in a UK pig confirms this common human genotype can infect pigs and also highlights the necessity of surveillance of porcine rotavirus genotypes to safeguard human as well as porcine health.
authors.affiliation: University of Nottingham, School of Biosciences, Division of Food Science, Sutton Bonington Campus, Loughborough LE12 5RD, UK.
authors.forename: Rebecca
authors.initials: R
authors.lastname: Chandler-Bostock
authors.affiliation: University of Nottingham, School of Biosciences, Division of Food Science, Sutton Bonington Campus, Loughborough LE12 5RD, UK.
authors.forename: Laura R
authors.initials: LR
authors.lastname: Hancox
authors.affiliation: Virus Reference Department, Public Health England, London, NW9 5HT, UK.
authors.forename: Sameena
authors.initials: S
authors.lastname: Nawaz
authors.affiliation: University of Nottingham, School of Biosciences, Division of Food Science, Sutton Bonington Campus, Loughborough LE12 5RD, UK.
authors.forename: Oliver
authors.initials: O
authors.lastname: Watts
authors.affiliation: Virus Reference Department, Public Health England, London, NW9 5HT, UK.
authors.forename: Miren
authors.initials: M
authors.lastname: Iturriza-Gomara
authors.forename: Kenneth H
authors.initials: KH
authors.lastname: Mellits
authors.affiliation: University of Nottingham, School of Biosciences, Division of Food Science, Sutton Bonington Campus, Loughborough LE12 5RD, UK. Electronic address: ken.mellits@nottingham.ac.uk.
authors.forename: Kenneth M
authors.initials: KM
authors.lastname: Mellits
mesh_terms: D000818:Animals; D001483:Base Sequence; D014644:Genetic Variation; D005838:Genotype; D006801:Humans; D008969:Molecular Sequence Data; D010802:Phylogeny; D012189:Retrospective Studies; D012401:Rotavirus / Q000145:classification / Q000235:genetics*; D012400:Rotavirus Infections / Q000453:epidemiology / Q000635:transmission / Q000662:veterinary* / Q000821:virology; D013552:Swine; D013553:Swine Diseases / Q000453:epidemiology* / Q000635:transmission / Q000821:virology; D006113:United Kingdom / Q000453:epidemiology; D014764:Viral Proteins / Q000235:genetics*
chemical_list: D014764:Viral Proteins
keywords: Phylogenetic; Porcine; Rotavirus; Zoonosis