title: Frequencies of two functionally significant SNPs and their haplotypes of organic anion transporting polypeptide 1B1 SLCO1B1 gene in six ethnic groups of Pakistani population.
abstract: OBJECTIVE
  Organic anion transporter polypeptide 1B1 (OATP1B1) encoded by solute carrier organic transporter 1B1 (SLCO1B1) gene; a transporter involved in the uptake of drugs and endogenous compounds is present in hepatocyte sinusoidal membrane. Aim of this study was to investigate the frequencies of functionally significant SNPs (388A>G and 521T>C) and their haplotypes in 6 ethnic groups of Pakistani population through the development of rapid and efficient Tetra amplification refractory mutation system (T. ARMS) genotyping assay.
  
  
  METHODS
  Frequencies of alleles, genotype, and haplotypes of two functionally significant Single nucleotide polymorphism in 180 healthy Pakistani subjects and distributions in six ethnic groups by using a single step T. ARMS genotyping assay.
  
  
  RESULTS
  The allelic frequency for 388A>G SNP was 50% in total Pakistani population with Single nucleotide polymorphism distributions of 9.7%, 15.1%, 19.4%, 16.1%, 18.3%, and 21.5% in Punjabi, Sindhi, Balouchi, Pathan, Kashmiri and Hazara/Baltistan groups respectively; and for 521T>C SNP it was 23.9% in total Pakistani population with distributions of 11.1%, 8.9%, 15.6%, 11.1%, 31.1% and 22.2% in Punjabi, Sindhi, Balouchi, Pathan, Kashmiri, and Hazara/Baltistan groups. Both functionally significant SNPs occurred in four major haplotypes with a frequency of 35.5% for 388A/521T (*1A), 40.5% for 388G/521T (*1B), 14.4% for 388A/521C (*5), and 9.4% for 388G/521C (*15) with varying distributions among six ethnic groups.
  
  
  CONCLUSIONS
  The 388A>G and 521T>C genotypes and corresponding haplotypes are present at varying frequencies in various ethnic groups of Pakistani population. Pharmacokinetic and pharmacodynamic profiling is needed to assess and characterize the effects of these haplotypes in our population.
authors.affiliation: Department of Biochemistry and Molecular Biology, Centre for Research in Experimental and Applied Medicine (CREAM), Army Medical College, National University of Sciences & Technology (NUST), Islamabad, Pakistan.
authors.forename: Tausif Ahmed
authors.initials: TA
authors.lastname: Rajput
authors.affiliation: Department of Biochemistry and Molecular Biology, Centre for Research in Experimental and Applied Medicine (CREAM), Army Medical College, National University of Sciences & Technology (NUST), Islamabad, Pakistan.
authors.forename: Abdul Khaliq
authors.initials: AK
authors.lastname: Naveed
authors.affiliation: Department of Biochemistry and Molecular Biology, Centre for Research in Experimental and Applied Medicine (CREAM), Army Medical College, National University of Sciences & Technology (NUST), Islamabad, Pakistan.
authors.forename: Shakir
authors.initials: S
authors.lastname: Khan
authors.affiliation: Department of Biochemistry and Molecular Biology, Centre for Research in Experimental and Applied Medicine (CREAM), Army Medical College, National University of Sciences & Technology (NUST), Islamabad, Pakistan.
authors.forename: Zia-Ur-Rehman
authors.initials: ZU
authors.lastname: Farooqi
keywords: Haplotype; OATP1B1; SLCO1B1; Single nucleotide polymorphism