title: [Microbial diversity and ammonia-oxidizing microorganism of a soil sample near an acid mine drainage lake].
abstract: The main physicochemical parameters of the soil sample which was collected near an acid mine drainage reservoir in Anhui province was analyzed. The microbial diversity and community structure was studied through the construction of bacteria and archaea 16S rRNA gene clone libraries and ammonia monooxygenase gene clone library of archaea. The functional groups which were responsible for the process of ammonia oxidation were also discussed. The results indicated that the soil sample had extreme low pH value (pH < 3) and high ions concentration, which was influenced by the acid mine drainage (AMD). All the 16S rRNA gene sequences of bacteria clone library fell into 11 phyla, and Acidobacteria played the most significant role in the ecosystem followed by Verrucomicrobia. A great number of acidophilic bacteria existed in the soil sample, such as Candidatus Koribacter versatilis and Holophaga sp.. The archaea clone library consisted of 2 phyla (Thaumarchaeota and Euryarchaeota). The abundance of Thaumarchaeota was remarkably higher than Euryarchaeota. The ammonia oxidation in the soil environment was probably driven by ammonia-oxidizing archaea, and new species of ammonia-oxidizing archaea existed in the soil sample.
authors.forename: Ying
authors.initials: Y
authors.lastname: Liu
authors.forename: Li-Hua
authors.initials: LH
authors.lastname: Wang
authors.forename: Chun-Bo
authors.initials: CB
authors.lastname: Hao
authors.forename: Lu
authors.initials: L
authors.lastname: Li
authors.forename: Si-Yuan
authors.initials: SY
authors.lastname: Li
authors.forename: Chuan-Ping
authors.initials: CP
authors.lastname: Feng
mesh_terms: D000641:Ammonia / Q000378:metabolism*; D001105:Archaea / Q000145:classification*; D001419:Bacteria / Q000145:classification*; D017753:Ecosystem; D060106:Lakes; D008906:Mining; D010084:Oxidation-Reduction; D010088:Oxidoreductases / Q000235:genetics; D012336:RNA, Ribosomal, 16S / Q000235:genetics; D017422:Sequence Analysis, DNA; D012987:Soil / Q000737:chemistry; D012988:Soil Microbiology
chemical_list: D012336:RNA, Ribosomal, 16S; D012987:Soil; D000641:Ammonia; D010088:Oxidoreductases; C045582:ammonia monooxygenase