title: Describing localized diseases in medical ontology: an FMA-based algorithm.
abstract: OntolUrgences is a termino-ontological resource developed to index and retrieve information in electronic Emergency Medical Record. In this project, we improved the ontology coverage to accommodate both anatomical and pathophysiological concepts in emergency medicine. This work lead to the automatic addition of 3,470 concepts and their underlying semantic formalization. In our method, we reuse and select the anatomical concepts relevant to emergency from FMA: To capture the anatomical specific concepts, (i) we involved Emergency practitioners and identified the key concepts from this domain; (ii) we applied an automatic algorithm to define the semantic relationships and integrated the result in the existing ontology.
authors.affiliation: Assistance Publique - Hôpitaux de Paris, Paris, France.
authors.forename: Jean
authors.initials: J
authors.lastname: Charlet
authors.affiliation: INSERM, U1142, LIMICS, Paris, France, Sorbonne Universités, UPMC Univ Paris 06, UMR_S 1142, LIMICS, F-75006, Paris, France, Université Paris 13, Sorbonne Paris Cité, LIMICS, (UMR_S 1142), Bobigny, France.
authors.forename: Laurent
authors.initials: L
authors.lastname: Mazuel
authors.affiliation: INSERM, U1142, LIMICS, Paris, France, Sorbonne Universités, UPMC Univ Paris 06, UMR_S 1142, LIMICS, F-75006, Paris, France, Université Paris 13, Sorbonne Paris Cité, LIMICS, (UMR_S 1142), Bobigny, France.
authors.forename: Gunnar
authors.initials: G
authors.lastname: Declerck
authors.affiliation: Dpt Urgences CHU d'Angers, Angers, France.
authors.forename: Patrick
authors.initials: P
authors.lastname: Miroux
authors.affiliation: Centre hospitalier de Compiègne, Compiègne, France.
authors.forename: Pierre
authors.initials: P
authors.lastname: Gayet
mesh_terms: D000715:Anatomy / Q000145:classification*; D004194:Disease / Q000145:classification*; D057286:Electronic Health Records / Q000458:organization & administration*; D004636:Emergency Service, Hospital / Q000458:organization & administration*; D005602:France; D006751:Hospital Information Systems / Q000458:organization & administration*; D016247:Information Storage and Retrieval / Q000379:methods; D009323:Natural Language Processing; D012660:Semantics; D009626:Terminology as Topic; D018875:Vocabulary, Controlled