title: Regulatory networks, genes and glycerophospholipid biosynthesis pathway in schistosomiasis: a systems biology view for pharmacological intervention.
abstract: Understanding network topology through embracing the global dynamical regulation of genes in an active state space rather than traditional one-gene-one trait approach facilitates the rational drug development process. Schistosomiasis, a neglected tropical disease, has glycerophospholipids as abundant molecules present on its surface. Lack of effective clinical solutions to treat pathogens encourages us to carry out systems-level studies that could contribute to the development of an effective therapy. Development of a strategy for identifying drug targets by combined genome-scale metabolic network and essentiality analyses through in silico approaches provides tantalizing opportunity to investigate the role of protein/substrate metabolism. A genome-scale metabolic network model reconstruction represents choline-phosphate cytidyltransferase as the rate limiting enzyme and regulates the rate of phosphatidylcholine (PC) biosynthesis. The uptake of choline was regulated by choline concentration, promoting the regulation of phosphocholine synthesis. In Schistosoma, the change in developmental stage could result from the availability of choline, hampering its developmental cycle. There are no structural reports for this protein. In order to inhibit the activity of choline-phosphate cytidyltransferase (CCT), it was modeled by homology modeling using 1COZ as the template from Bacillus subtilis. The transition-state stabilization and catalytic residues were mapped as 'HXGH' and 'RTEGISTT' motif. CCT catalyzes the formation of CDP-choline from phosphocholine in which nucleotidyltransferase adds CTP to phosphocholine. The presence of phosphocholine permits the parasite to survive in an immunologically hostile environment. This feature endeavors development of an inhibitor specific for cytidyltransferase in Schistosoma. Flavonolignans were used to inhibit this activity in which hydnowightin showed the highest affinity as compared to miltefosine.
authors.affiliation: National Centre for Cell Science, NCCS Complex, Ganeshkhind, Pune University Campus, Pune 411007, India.
authors.forename: Sonali
authors.initials: S
authors.lastname: Shinde
authors.affiliation: National Centre for Cell Science, NCCS Complex, Ganeshkhind, Pune University Campus, Pune 411007, India.
authors.forename: Milsee
authors.initials: M
authors.lastname: Mol
authors.affiliation: National Centre for Cell Science, NCCS Complex, Ganeshkhind, Pune University Campus, Pune 411007, India. Electronic address: shailza_iitd@yahoo.com.
authors.forename: Shailza
authors.initials: S
authors.lastname: Singh
mesh_terms: D000595:Amino Acid Sequence; D003566:Cytidine Diphosphate Choline / Q000737:chemistry; D055808:Drug Discovery / Q000379:methods*; D053263:Gene Regulatory Networks; D020404:Glycerophospholipids / Q000096:biosynthesis*; D006790:Host-Parasite Interactions / Q000235:genetics; D006801:Humans; D053858:Metabolic Networks and Pathways / Q000235:genetics; D008958:Models, Molecular; D062105:Molecular Docking Simulation; D008969:Molecular Sequence Data; D009713:Nucleotidyltransferases / Q000737:chemistry / Q000235:genetics / Q000378:metabolism; D010767:Phosphorylcholine / Q000737:chemistry / Q000378:metabolism; D017434:Protein Structure, Tertiary; D012552:Schistosomiasis / Q000188:drug therapy* / Q000235:genetics* / Q000378:metabolism*; D012556:Schistosomicides / Q000737:chemistry / Q000302:isolation & purification; D049490:Systems Biology / Q000379:methods
chemical_list: D020404:Glycerophospholipids; D012556:Schistosomicides; D010767:Phosphorylcholine; D003566:Cytidine Diphosphate Choline; D009713:Nucleotidyltransferases
keywords: Cytidyltransferase; Glycerophospholipid biosynthesis; Inhibitor designing; Metabolic network; Schistosomiasis