title: Theoretical Sum Frequency Generation Spectroscopy of Peptides.
abstract: Vibrational sum frequency generation (SFG) has become a very promising technique for the study of proteins at interfaces, and it has been applied to important systems such as anti-microbial peptides, ion channel proteins, and human islet amyloid polypeptide. Moreover, so-called "chiral" SFG techniques, which rely on polarization combinations that generate strong signals primarily for chiral molecules, have proven to be particularly discriminatory of protein secondary structure. In this work, we present a theoretical strategy for calculating protein amide I SFG spectra by combining line-shape theory with molecular dynamics simulations. We then apply this method to three model peptides, demonstrating the existence of a significant chiral SFG signal for peptides with chiral centers, and providing a framework for interpreting the results on the basis of the dependence of the SFG signal on the peptide orientation. We also examine the importance of dynamical and coupling effects. Finally, we suggest a simple method for determining a chromophore's orientation relative to the surface using ratios of experimental heterodyne-detected signals with different polarizations, and test this method using theoretical spectra.
authors.affiliation: Theoretical Chemistry Institute and Department of Chemistry, University of Wisconsin, Madison, Wisconsin 53706, United States.
authors.forename: Joshua K
authors.initials: JK
authors.lastname: Carr
authors.affiliation: Theoretical Chemistry Institute and Department of Chemistry, University of Wisconsin, Madison, Wisconsin 53706, United States.
authors.forename: Lu
authors.initials: L
authors.lastname: Wang
authors.affiliation: Theoretical Chemistry Institute and Department of Chemistry, University of Wisconsin, Madison, Wisconsin 53706, United States.
authors.forename: Santanu
authors.initials: S
authors.lastname: Roy
authors.affiliation: Theoretical Chemistry Institute and Department of Chemistry, University of Wisconsin, Madison, Wisconsin 53706, United States.
authors.forename: James L
authors.initials: JL
authors.lastname: Skinner
mesh_terms: D000081:Acetamides / Q000737:chemistry; D002244:Carbon / Q000737:chemistry; D006096:Gramicidin / Q000737:chemistry; D006859:Hydrogen / Q000737:chemistry; D008956:Models, Chemical; D056004:Molecular Dynamics Simulation; D009584:Nitrogen / Q000737:chemistry; D010100:Oxygen / Q000737:chemistry; D010455:Peptides / Q000737:chemistry*; D017433:Protein Structure, Secondary; D013057:Spectrum Analysis / Q000379:methods*; D014732:Vibration
chemical_list: D000081:Acetamides; D010455:Peptides; D006096:Gramicidin; D002244:Carbon; D006859:Hydrogen; D009584:Nitrogen; D010100:Oxygen; C018595:N-methylacetamide