title: NIM: a node influence based method for cancer classification.
abstract: The classification of different cancer types owns great significance in the medical field. However, the great majority of existing cancer classification methods are clinical-based and have relatively weak diagnostic ability. With the rapid development of gene expression technology, it is able to classify different kinds of cancers using DNA microarray. Our main idea is to confront the problem of cancer classification using gene expression data from a graph-based view. Based on a new node influence model we proposed, this paper presents a novel high accuracy method for cancer classification, which is composed of four parts: the first is to calculate the similarity matrix of all samples, the second is to compute the node influence of training samples, the third is to obtain the similarity between every test sample and each class using weighted sum of node influence and similarity matrix, and the last is to classify each test sample based on its similarity between every class. The data sets used in our experiments are breast cancer, central nervous system, colon tumor, prostate cancer, acute lymphoblastic leukemia, and lung cancer. experimental results showed that our node influence based method (NIM) is more efficient and robust than the support vector machine, K-nearest neighbor, C4.5, naive Bayes, and CART.
authors.affiliation: College of Computer Science and Technology, Zhejiang University, Hangzhou 310027, China.
authors.forename: Yiwen
authors.initials: Y
authors.lastname: Wang
authors.affiliation: College of Computer Science and Technology, Zhejiang University, Hangzhou 310027, China.
authors.forename: Min
authors.identifier: 0000-0002-2966-6928
authors.initials: M
authors.lastname: Yao
authors.affiliation: College of Computer Science and Technology, Zhejiang University, Hangzhou 310027, China.
authors.forename: Jianhua
authors.initials: J
authors.lastname: Yang
mesh_terms: D005260:Female; D020869:Gene Expression Profiling / Q000379:methods*; D006801:Humans; D008297:Male; D008957:Models, Genetic; D009369:Neoplasms / Q000145:classification / Q000235:genetics*; D020411:Oligonucleotide Array Sequence Analysis / Q000379:methods*; D015203:Reproducibility of Results