title: De novo assembly and characterization of stress transcriptome and regulatory networks under temperature, salt and hormone stresses in Lilium lancifolium.
abstract: Plants have continually confrontation with different abiotic stresses, including salt, low temperature, drought or hormone stress. The plants acclimate to the environmental stresses relating with the falls of the molecular mesh including the stress signal receiver, signal transcriptional regulation and the expression of functional and structure genes. Using the RNA-seq, we carried out a transcriptional analysis under cold treatment for investigating a profound comprehension of the signal network and molecular metabolisms reaction included in abiotic stress reaction for Lilium lancifolium. Our study identified 18,722 unigenes had demonstrated the resemblance to the known exact proteins in the Swiss-Prot protein database and classified them by Gene ontology into three primary kinds: cellular component, biological process, and molecular function, and then 15,898 unigenes aligned to existing sequences in the KEGG databases. Based on the transcriptome results of cold stress, more stress-related genes were identified and analyzed of their expressions in other abiotic stress treatments as 37 °C, ABA, JA and Na. Meanwhile, bioinformatics qRT-PCR analyses of stress genes as LlDREB1, LlAP2, LlNAC1, LlHOT, LlR2R3-MYB and LlCDPK revealed that novel candidate genes encoding ethylene responsive transporters and serine/threonine receptor-like kinases, which contributed to speculate the signal regulation pathway during the abiotic stresses; engineering genes could also boost the tolerance to stress, as protected and maintained the function and structure of cellular components. Our research conjectured the abiotic stress signal transduction pathway and identified the expected key ingredients regulating the stress tolerance in Lilium lancifolium, which would enable the in-depth molecular exploration of stress-tolerance mechanisms in lily.
authors.affiliation: College of Landscape Architecture, Beijing Forestry University, Beijing, 100083, China, airainmail@126.com.
authors.forename: Jingmao
authors.initials: J
authors.lastname: Wang
authors.forename: Qing
authors.initials: Q
authors.lastname: Wang
authors.forename: Yang
authors.initials: Y
authors.lastname: Yang
authors.forename: Xiaohua
authors.initials: X
authors.lastname: Liu
authors.forename: Jiahui
authors.initials: J
authors.lastname: Gu
authors.forename: Wenqi
authors.initials: W
authors.lastname: Li
authors.forename: Suliya
authors.initials: S
authors.lastname: Ma
authors.forename: Yingmin
authors.initials: Y
authors.lastname: Lu
mesh_terms: D003080:Cold Temperature; D020869:Gene Expression Profiling / Q000379:methods*; D018506:Gene Expression Regulation, Plant; D053263:Gene Regulatory Networks; D027762:Lilium / Q000235:genetics / Q000502:physiology*; D010940:Plant Proteins / Q000235:genetics*; D012492:Salts; D017423:Sequence Analysis, RNA; D013312:Stress, Physiological
chemical_list: D010940:Plant Proteins; D012492:Salts