title: High-resolution melt analysis of the minisatellite D1S80: a potential forensic screening tool.
abstract: High-resolution melt (HRM) analysis of the VNTR region of the human D1S80 locus, a 16-bp repeat minisatellite from approximately 400 to over 700 bp in length, was investigated. A Qiagen Rotor-Gene Q using the Type-it PCR HRM kit was used to acquire HRM curves for 14 single, and 16 biallelic, dsDNA samples. The HRM analysis was applicable over a range of DNA concentrations; however the characteristics of the melt curve did depend on the forward and reverse primer ratio. Despite the large amplicon size and the similarities of the repeat sequences, it was possible to discriminate different genotypes. Heterozygotes were clearly different from the homozygous variants and even small differences in the repeat sequence could be differentiated. However, the melt analysis requires a high-resolution system with temperature resolution of 0.02°C or better in order to sort out differences in these large amplicons of near identical GC content (in this case 56%). HRM analysis of amplicons with large repeat sequences can be used as a means of comparing DNA fragments. Examination of multiple sequences can be used to differentiate DNA samples and demonstrate the potential of HRM analysis as a rapid and inexpensive prescreening technique in forensic applications.
authors.affiliation: Department of Chemistry and Biochemistry, University of California, San Diego, CA, USA.
authors.forename: Robert S
authors.initials: RS
authors.lastname: Pomeroy
authors.forename: Kuppareddi
authors.initials: K
authors.lastname: Balamurugan
authors.forename: Helena
authors.initials: H
authors.lastname: Wong
authors.forename: George
authors.initials: G
authors.lastname: Duncan
mesh_terms: D001482:Base Composition; D004247:DNA / Q000032:analysis* / Q000235:genetics; D053803:Forensic Genetics / Q000379:methods*; D006801:Humans; D018598:Minisatellite Repeats / Q000235:genetics*; D009691:Nucleic Acid Denaturation / Q000235:genetics*; D016133:Polymerase Chain Reaction; D020641:Polymorphism, Single Nucleotide; D017422:Sequence Analysis, DNA / Q000379:methods*
chemical_list: D004247:DNA
keywords: D1S80; Forensic; High-resolution melt; Minisatellite; SNP