title: Assessing when chromosomal rearrangements affect the dynamics of speciation: implications from computer simulations.
abstract: Many hypotheses have been put forth to explain the origin and spread of inversions, and their significance for speciation. Several recent genic models have proposed that inversions promote speciation with gene flow due to the adaptive significance of the genes contained within them and because of the effects inversions have on suppressing recombination. However, the consequences of inversions for the dynamics of genome wide divergence across the speciation continuum remain unclear, an issue we examine here. We review a framework for the genomics of speciation involving the congealing of the genome into alternate adaptive states representing species ("genome wide congealing"). We then place inversions in this context as examples of how genetic hitchhiking can potentially hasten genome wide congealing. Specifically, we use simulation models to (i) examine the conditions under which inversions may speed genome congealing and (ii) quantify predicted magnitudes of these effects. Effects of inversions on promoting speciation were most common and pronounced when inversions were initially fixed between populations before secondary contact and adaptation involved many genes with small fitness effects. Further work is required on the role of underdominance and epistasis between a few loci of major effect within inversions. The results highlight five important aspects of the roles of inversions in speciation: (i) the geographic context of the origins and spread of inversions, (ii) the conditions under which inversions can facilitate divergence, (iii) the magnitude of that facilitation, (iv) the extent to which the buildup of divergence is likely to be biased within vs. outside of inversions, and (v) the dynamics of the appearance and disappearance of exceptional divergence within inversions. We conclude by discussing the empirical challenges in showing that inversions play a central role in facilitating speciation with gene flow.
authors.affiliation: Department of Biological Sciences, University of Notre Dame Notre Dame, IN, USA.
authors.forename: Jeffrey L
authors.initials: JL
authors.lastname: Feder
authors.affiliation: Department of Animal and Plant Sciences, University of Sheffield Sheffield, UK.
authors.forename: Patrik
authors.initials: P
authors.lastname: Nosil
authors.affiliation: Department of Ecology and Evolutionary Biology, University of Colorado Boulder, CO, USA.
authors.forename: Samuel M
authors.initials: SM
authors.lastname: Flaxman
keywords: ecological speciation; genetic hitchhiking; genomic architecture; genomic islands of divergence; inversions; linkage disequilibrium; models; speciation-with-gene-flow