title: Hepatitis E virus of subtype 3i in chronically infected kidney transplant recipients in southeastern France.
abstract: Hepatitis E virus (HEV) is a leading cause of waterborne acute hepatitis in developing countries. In Europe, HEV causes a zoonotic disease and is hyperendemic in southern France. Four HEV genotypes (1 to 4) have been defined, and the most used classification divides them into 24 subtypes. Autochthonous European HEV strains belong in majority to genotype 3. Subtypes 3c, 3f, and 3e are representative of the HEV diversity in France. HEV causes chronic hepatitis in solid-organ transplant recipients in Europe, and viral characteristics associated with chronicity are poorly documented. We sequenced 343-nucleotide-long HEV genomic fragments from the serum of eight chronically infected kidney transplant recipients and a near-full-length genome in one case. We identified in four patients (50%) HEV of subtype 3i, not described previously in France. If shorter genomic fragments were used in phylogenetic analyses, these HEV sequences were clustered with open reading frame 2 (ORF2) fragments labeled as subtype 3c. At least five of the eight HEV 3i sequences recovered from humans in our phylogenetic analyses were from chronically infected kidney transplant recipients. These data show that the description of the prevalence and geographical distribution of HEV subtypes may be partially inaccurate and that criteria for classification as 3i and 3c should be clarified. Extended molecular virology analyses are required to improve knowledge of HEV epidemiology and determinants of chronic HEV infection.
authors.affiliation: Centre de Néphrologie et Transplantation Rénale, Assistance Publique-Hôpitaux de Marseille, Marseille, France URMITE, UM63 CNRS 7278 IRD 198, Aix-Marseille Université, Marseille, France.
authors.forename: Valérie
authors.initials: V
authors.lastname: Moal
authors.affiliation: Service d'Hépatogastroentérologie, Assistance Publique-Hôpitaux de Marseille, Marseille, France.
authors.forename: René
authors.initials: R
authors.lastname: Gérolami
authors.affiliation: Fondation IHU Méditerranée Infection, Pôle des Maladies Infectieuses et Tropicales Clinique et Biologique, Fédération de Bactériologie-Hygiène-Virologie, Centre Hospitalo-Universitaire Timone, Assistance Publique-Hôpitaux de Marseille, Marseille, France.
authors.forename: Audrey
authors.initials: A
authors.lastname: Ferretti
authors.affiliation: Centre de Néphrologie et Transplantation Rénale, Assistance Publique-Hôpitaux de Marseille, Marseille, France.
authors.forename: Raj
authors.initials: R
authors.lastname: Purgus
authors.affiliation: Centre d'Investigation Clinique, Assistance Publique-Hôpitaux de Marseille, Marseille, France.
authors.forename: Patricia
authors.initials: P
authors.lastname: Devichi
authors.affiliation: Centre de Néphrologie et Transplantation Rénale, Assistance Publique-Hôpitaux de Marseille, Marseille, France.
authors.forename: Stéphane
authors.initials: S
authors.lastname: Burtey
authors.affiliation: URMITE, UM63 CNRS 7278 IRD 198, Aix-Marseille Université, Marseille, France Fondation IHU Méditerranée Infection, Pôle des Maladies Infectieuses et Tropicales Clinique et Biologique, Fédération de Bactériologie-Hygiène-Virologie, Centre Hospitalo-Universitaire Timone, Assistance Publique-Hôpitaux de Marseille, Marseille, France philippe.colson@univ-amu.fr.
authors.forename: Philippe
authors.initials: P
authors.lastname: Colson
mesh_terms: D000328:Adult; D000368:Aged; D005260:Female; D005602:France / Q000453:epidemiology; D005838:Genotype; D060005:Genotyping Techniques; D016751:Hepatitis E / Q000453:epidemiology / Q000821:virology*; D016752:Hepatitis E virus / Q000145:classification* / Q000235:genetics* / Q000302:isolation & purification; D006521:Hepatitis, Chronic / Q000453:epidemiology / Q000821:virology*; D006801:Humans; D016030:Kidney Transplantation; D008297:Male; D008875:Middle Aged; D017720:Molecular Epidemiology; D008969:Molecular Sequence Data; D012367:RNA, Viral / Q000235:genetics; D017422:Sequence Analysis, DNA; D066027:Transplant Recipients
chemical_list: D012367:RNA, Viral