title: Assessing the genetic relationships of Curcuma alismatifolia varieties using simple sequence repeat markers.
abstract: The genus Curcuma is a member of the ginger family (Zingiberaceae) that has recently become popular for use as flowering pot plants, both indoors and as patio and landscape plants. We used PCR-based molecular markers (SSRs) to elucidate genetic variation and relationships between five varieties of Curcuma (Curcuma alismatifolia) cultivated in Malaysia. Of the primers tested, 8 (of 17) SSR primers were selected for their reproducibility and high rates of polymorphism. The number of presumed alleles revealed by the SSR analysis ranged from two to six alleles, with a mean value of 3.25 alleles per locus. The values of HO and HE ranged from 0 to 0.8 (mean value of 0.2) and 0.1837 to 0.7755 (mean value of 0.5102), respectively. Eight SSR primers yielded 26 total amplified fragments and revealed high rates of polymorphism among the varieties studied. The polymorphic information content varied from 0.26 to 0.73. Dice's similarity coefficient was calculated for all pairwise comparisons and used to construct an unweighted pair group method with arithmetic average (UPGMA) dendrogram. Similarity coefficient values from 0.2105 to 0.6667 (with an average of 0.4386) were found among the five varieties examined. A cluster analysis of data using a UPGMA algorithm divided the five varieties/hybrids into 2 groups.
authors.affiliation: Department of Crop Science, Faculty of Agriculture, University Putra Malaysia, Serdang, Selangor, Malaysia sima_taheri65@yahoo.com.
authors.forename: S
authors.initials: S
authors.lastname: Taheri
authors.affiliation: Department of Crop Science, Faculty of Agriculture, University Putra Malaysia, Serdang, Selangor, Malaysia.
authors.forename: T L
authors.initials: TL
authors.lastname: Abdullah
authors.affiliation: Department of Crop Science, Faculty of Agriculture, University Putra Malaysia, Serdang, Selangor, Malaysia.
authors.forename: N A P
authors.initials: NA
authors.lastname: Abdullah
authors.affiliation: Agrotechnology and Biosciences Division, Malaysian Nuclear Agency (Nuclear Malaysia), Bangi, Selangor, Malaysia.
authors.forename: Z
authors.initials: Z
authors.lastname: Ahmad
authors.affiliation: Department of Crop Science, Faculty of Agriculture, University Putra Malaysia, Serdang, Selangor, Malaysia.
authors.forename: E
authors.initials: E
authors.lastname: Karimi
authors.affiliation: Department of Crop Science, Faculty of Agriculture, University Putra Malaysia, Serdang, Selangor, Malaysia.
authors.forename: M R
authors.initials: MR
authors.lastname: Shabanimofrad
mesh_terms: D000483:Alleles; D030024:Curcuma / Q000145:classification* / Q000235:genetics*; D056426:Genetic Loci; D014644:Genetic Variation; D018895:Microsatellite Repeats; D010802:Phylogeny; D011110:Polymorphism, Genetic