title: Activity-induced clustering in model dumbbell swimmers: the role of hydrodynamic interactions.
abstract: Using a fluid-particle dynamics approach, we numerically study the effects of hydrodynamic interactions on the collective dynamics of active suspensions within a simple model for bacterial motility: each microorganism is modeled as a stroke-averaged dumbbell swimmer with prescribed dipolar force pairs. Using both simulations and qualitative arguments, we show that, when the separation between swimmers is comparable to their size, the swimmers' motions are strongly affected by activity-induced hydrodynamic forces. To further understand these effects, we investigate semidilute suspensions of swimmers in the presence of thermal fluctuations. A direct comparison between simulations with and without hydrodynamic interactions shows these to enhance the dynamic clustering at a relatively small volume fraction; with our chosen model the key ingredient for this clustering behavior is hydrodynamic trapping of one swimmer by another, induced by the active forces. Furthermore, the density dependence of the motility (of both the translational and rotational motions) exhibits distinctly different behaviors with and without hydrodynamic interactions; we argue that this is linked to the clustering tendency. Our study illustrates the fact that hydrodynamic interactions not only affect kinetic pathways in active suspensions, but also cause major changes in their steady state properties.
authors.affiliation: Institute of Industrial Science, University of Tokyo, Meguro-ku, Tokyo 153-8505, Japan.
authors.forename: Akira
authors.initials: A
authors.lastname: Furukawa
authors.affiliation: School of Physics and Astronomy, University of Edinburgh, JCMB Kings Buildings, Mayfield Road, Edinburgh EH9 3JZ, United Kingdom.
authors.forename: Davide
authors.initials: D
authors.lastname: Marenduzzo
authors.affiliation: School of Physics and Astronomy, University of Edinburgh, JCMB Kings Buildings, Mayfield Road, Edinburgh EH9 3JZ, United Kingdom.
authors.forename: Michael E
authors.initials: ME
authors.lastname: Cates
mesh_terms: D018407:Bacterial Physiological Phenomena; D003198:Computer Simulation; D057446:Hydrodynamics; D007700:Kinetics; D008954:Models, Biological; D012399:Rotation; D012997:Solvents; D013535:Suspensions; D013550:Swimming / Q000502:physiology; D013696:Temperature
chemical_list: D012997:Solvents; D013535:Suspensions