title: GeneMANIA: Fast gene network construction and function prediction for Cytoscape.
abstract: The GeneMANIA Cytoscape app enables users to construct a composite gene-gene functional interaction network from a gene list. The resulting network includes the genes most related to the original list, and functional annotations from Gene Ontology. The edges are annotated with details about the publication or data source the interactions were derived from. The app leverages GeneMANIA's database of 1800+ networks, containing over 500 million interactions spanning 8 organisms: A. thaliana, C. elegans, D. melanogaster, D. rerio, H. sapiens, M. musculus, R. norvegicus, and S. cerevisiae. Users may also import their own organisms, networks, and expression profiles. The app is compatible with Cytoscape versions 2 and 3.
authors.affiliation: Departments of Molecular Genetics and Computer Science, The Donnelly Centre, University of Toronto, Toronto, ON, M5S 3E1, Canada.
authors.forename: Jason
authors.initials: J
authors.lastname: Montojo
authors.affiliation: Departments of Molecular Genetics and Computer Science, The Donnelly Centre, University of Toronto, Toronto, ON, M5S 3E1, Canada.
authors.forename: Khalid
authors.initials: K
authors.lastname: Zuberi
authors.affiliation: Departments of Molecular Genetics and Computer Science, The Donnelly Centre, University of Toronto, Toronto, ON, M5S 3E1, Canada.
authors.forename: Harold
authors.initials: H
authors.lastname: Rodriguez
authors.affiliation: Departments of Molecular Genetics and Computer Science, The Donnelly Centre, University of Toronto, Toronto, ON, M5S 3E1, Canada.
authors.forename: Gary D
authors.initials: GD
authors.lastname: Bader
authors.affiliation: Departments of Molecular Genetics and Computer Science, The Donnelly Centre, University of Toronto, Toronto, ON, M5S 3E1, Canada.
authors.forename: Quaid
authors.initials: Q
authors.lastname: Morris