title: Ammonium uptake by phytoplankton regulates nitrification in the sunlit ocean.
abstract: Nitrification, the microbial oxidation of ammonium to nitrate, is a central part of the nitrogen cycle. In the ocean's surface layer, the process alters the distribution of inorganic nitrogen species available to phytoplankton and produces nitrous oxide. A widely held idea among oceanographers is that nitrification is inhibited by light in the ocean. However, recent evidence that the primary organisms involved in nitrification, the ammonia-oxidizing archaea (AOA), are present and active throughout the surface ocean has challenged this idea. Here we show, through field experiments coupling molecular genetic and biogeochemical approaches, that competition for ammonium with phytoplankton is the strongest regulator of nitrification in the photic zone. During multiday experiments at high irradiance a single ecotype of AOA remained active in the presence of rapidly growing phytoplankton. Over the course of this three day experiment, variability in the intensity of competition with phytoplankton caused nitrification rates to decline from those typical of the lower photic zone (60 nmol L-1 d-1) to those in well-lit layers (<1 nmol L-1 d-1). During another set of experiments, nitrification rates exhibited a diel periodicity throughout much of the photic zone, with the highest rates occurring at night when competition with phytoplankton is lowest. Together, the results of our experiments indicate that nitrification rates in the photic zone are more strongly regulated by competition with phytoplankton for ammonium than they are by light itself. This finding advances our ability to model the impact of nitrification on estimates of new primary production, and emphasizes the need to more strongly consider the effects of organismal interactions on nutrient standing stocks and biogeochemical cycling in the surface of the ocean.
authors.affiliation: Research Division, Monterey Bay Aquarium Research Institute, Moss Landing, California, United States of America; Department of Environmental Earth System Science, Stanford University, Stanford, California, United States of America.
authors.forename: Jason M
authors.initials: JM
authors.lastname: Smith
authors.affiliation: Research Division, Monterey Bay Aquarium Research Institute, Moss Landing, California, United States of America.
authors.forename: Francisco P
authors.initials: FP
authors.lastname: Chavez
authors.affiliation: Department of Environmental Earth System Science, Stanford University, Stanford, California, United States of America.
authors.forename: Christopher A
authors.initials: CA
authors.lastname: Francis
mesh_terms: D064751:Ammonium Compounds / Q000378:metabolism*; D001105:Archaea / Q000378:metabolism*; D058465:Nitrification; D058458:Nitrogen Cycle; D009792:Oceans and Seas; D010839:Phytoplankton / Q000378:metabolism*; D013472:Sunlight
chemical_list: D064751:Ammonium Compounds