title: OrthoInspector 2.0: Software and database updates.
abstract: CONCLUSIONS
  We previously developed OrthoInspector, a package incorporating an original algorithm for the detection of orthology and inparalogy relations between different species. We have added new functionalities to the package. While its original algorithm was not modified, performing similar orthology predictions, we facilitated the prediction of very large databases (thousands of proteomes), refurbished its graphical interface, added new visualization tools for comparative genomics/protein family analysis and facilitated its deployment in a network environment. Finally, we have released three online databases of precomputed orthology relationships.
  
  
  BACKGROUND
  Package and databases are freely available at http://lbgi.fr/orthoinspector with all major browsers supported.
  
  
  BACKGROUND
  odile.lecompte@unistra.fr
  
  
  BACKGROUND
  Supplementary data are available at Bioinformatics online.
authors.affiliation: LBGI, Computer Science Department, ICube, UMR 7357, University of Strasbourg, CNRS, Fédération de médecine translationnelle, 4 rue Kirschleger 67085 Strasbourg, France and Department of Life Sciences, Natural History Museum, Cromwell Road, London SW7 5BD LBGI, Computer Science Department, ICube, UMR 7357, University of Strasbourg, CNRS, Fédération de médecine translationnelle, 4 rue Kirschleger 67085 Strasbourg, France and Department of Life Sciences, Natural History Museum, Cromwell Road, London SW7 5BD.
authors.forename: Benjamin
authors.initials: B
authors.lastname: Linard
authors.affiliation: LBGI, Computer Science Department, ICube, UMR 7357, University of Strasbourg, CNRS, Fédération de médecine translationnelle, 4 rue Kirschleger 67085 Strasbourg, France and Department of Life Sciences, Natural History Museum, Cromwell Road, London SW7 5BD.
authors.forename: Alexis
authors.initials: A
authors.lastname: Allot
authors.affiliation: LBGI, Computer Science Department, ICube, UMR 7357, University of Strasbourg, CNRS, Fédération de médecine translationnelle, 4 rue Kirschleger 67085 Strasbourg, France and Department of Life Sciences, Natural History Museum, Cromwell Road, London SW7 5BD.
authors.forename: Raphaël
authors.initials: R
authors.lastname: Schneider
authors.affiliation: LBGI, Computer Science Department, ICube, UMR 7357, University of Strasbourg, CNRS, Fédération de médecine translationnelle, 4 rue Kirschleger 67085 Strasbourg, France and Department of Life Sciences, Natural History Museum, Cromwell Road, London SW7 5BD.
authors.forename: Can
authors.initials: C
authors.lastname: Morel
authors.affiliation: LBGI, Computer Science Department, ICube, UMR 7357, University of Strasbourg, CNRS, Fédération de médecine translationnelle, 4 rue Kirschleger 67085 Strasbourg, France and Department of Life Sciences, Natural History Museum, Cromwell Road, London SW7 5BD.
authors.forename: Raymond
authors.initials: R
authors.lastname: Ripp
authors.affiliation: LBGI, Computer Science Department, ICube, UMR 7357, University of Strasbourg, CNRS, Fédération de médecine translationnelle, 4 rue Kirschleger 67085 Strasbourg, France and Department of Life Sciences, Natural History Museum, Cromwell Road, London SW7 5BD.
authors.forename: Marc
authors.initials: M
authors.lastname: Bigler
authors.affiliation: LBGI, Computer Science Department, ICube, UMR 7357, University of Strasbourg, CNRS, Fédération de médecine translationnelle, 4 rue Kirschleger 67085 Strasbourg, France and Department of Life Sciences, Natural History Museum, Cromwell Road, London SW7 5BD.
authors.forename: Julie D
authors.initials: JD
authors.lastname: Thompson
authors.affiliation: LBGI, Computer Science Department, ICube, UMR 7357, University of Strasbourg, CNRS, Fédération de médecine translationnelle, 4 rue Kirschleger 67085 Strasbourg, France and Department of Life Sciences, Natural History Museum, Cromwell Road, London SW7 5BD.
authors.forename: Olivier
authors.initials: O
authors.lastname: Poch
authors.affiliation: LBGI, Computer Science Department, ICube, UMR 7357, University of Strasbourg, CNRS, Fédération de médecine translationnelle, 4 rue Kirschleger 67085 Strasbourg, France and Department of Life Sciences, Natural History Museum, Cromwell Road, London SW7 5BD.
authors.forename: Odile
authors.initials: O
authors.lastname: Lecompte
mesh_terms: D000465:Algorithms; D003196:Computer Graphics; D016208:Databases, Factual; D006801:Humans; D058977:Molecular Sequence Annotation; D010802:Phylogeny; D040901:Proteomics / Q000379:methods*; D020539:Sequence Analysis, Protein / Q000379:methods*; D012984:Software