title: Mapping post-translational modifications of mammalian testicular specific histone variant TH2B in tetraploid and haploid germ cells and their implications on the dynamics of nucleosome structure.
abstract: Histones regulate a variety of chromatin templated events by their post-translational modifications (PTMs). Although there are extensive reports on the PTMs of canonical histones, the information on the histone variants remains very scanty. Here, we report the identification of different PTMs, such as acetylation, methylation, and phosphorylation of a major mammalian histone variant TH2B. Our mass spectrometric analysis has led to the identification of both conserved and unique modifications across tetraploid spermatocytes and haploid spermatids. We have also computationally derived the 3-dimensional model of a TH2B containing nucleosome in order to study the spatial orientation of the PTMs identified and their effect on nucleosome stability and DNA binding potential. From our nucleosome model, it is evident that substitution of specific amino acid residues in TH2B results in both differential histone-DNA and histone-histone contacts. Furthermore, we have also observed that acetylation on the N-terminal tail of TH2B weakens the interactions with the DNA. These results provide direct evidence that, similar to somatic H2B, the testis specific histone TH2B also undergoes multiple PTMs, suggesting the possibility of chromatin regulation by such covalent modifications in mammalian male germ cells.
authors.affiliation: Molecular Biology and Genetics Unit, Jawaharlal Nehru Centre for Advanced Scientific Research , Bangalore, Karnataka 560064, India.
authors.forename: Satya Krishna
authors.initials: SK
authors.lastname: Pentakota
authors.forename: Sankaran
authors.initials: S
authors.lastname: Sandhya
authors.forename: Arun
authors.initials: A
authors.lastname: P Sikarwar
authors.forename: Nagasuma
authors.initials: N
authors.lastname: Chandra
authors.forename: Manchanahalli R
authors.initials: MR
authors.lastname: Satyanarayana Rao
mesh_terms: D000595:Amino Acid Sequence; D000818:Animals; D006657:Histones / Q000737:chemistry / Q000378:metabolism* / Q000648:ultrastructure; D008297:Male; D008958:Models, Molecular; D008969:Molecular Sequence Data; D009707:Nucleosomes / Q000378:metabolism* / Q000648:ultrastructure; D010449:Peptide Mapping; D011499:Protein Processing, Post-Translational; D017208:Rats, Wistar; D013087:Spermatids / Q000378:metabolism*; D013090:Spermatocytes / Q000378:metabolism; D057891:Tetraploidy
chemical_list: D006657:Histones; D009707:Nucleosomes; C081018:histone H2B type 1-A
keywords: histone−histone and histone DNA interactions; mass spectrometry; nucleosome models; post-translational modifications