title: [Screening of common deafness gene mutations in 17 000 Chinese newborns from Chengdu based on microarray analysis].
abstract: OBJECTIVE
  To achieve early diagnosis for inheritable hearing loss and determine carrier rate of deafness causing gene mutations in order to provide information for premarital, prenatal and postnatal genetic counseling.
  
  
  METHODS
  A total of 17 000 dried heel blood spots of normal newborns in Chengdu were collected with informed consent obtained from their parents. Genomic DNA was extracted from dried blood spots using Qiagen DNA extraction kits. Microarrays with 9 common mutation loci of 4 deafness-associated genes in Chinese population were used. Nine hot mutations including GJB2 (35delG, 176del16, 235delC and 299delAT), GJB3 (538C> T), SLC26A4 (IVS 7-2A> G, 2168A> G), and mitochondrial DNA 12S rRNA (1555A> G, 1494C> T) were detected by PCR amplification and microarray hybridization. Mutations detected by microarray were verified by Sanger DNA sequencing.
  
  
  RESULTS
  Of the 17 000 new-borns, 542 neonates had mutations of the 4 genes. Heterozygous mutations of GJB2, at 235delC, 299delAT, and 176del16 were identified in 254, 55, and 15 newborns, respectively. Two newborns had homozygous mutation of GJB2, 235delC. Heterozygous mutations at 538C> T of GJB3, 2168A> G and IVS 7-2A> G of SLC26A4 were found in 23, 17 and 128 newborns, respectively. For mutation analysis of mitochondrial DNA 12S rRNA, 1494C> T and 1555A> G were homogeneous mutations in 4 and 42 neonates, respectively. In addition, 6 complexity mutations were detected, which demonstrated that one newborn had heterozygous mutations at GJB2 235delC and SLC26A4, IVS7-2A> G, one had heterozygous mutation GJB2 235delC and 12S rRNA homogeneous mutation, 1555 A> G, one heterozygous mutations at GJB2, 299delAT, and GJB3, 538C> T, one at GJB2, 299delAT and 12S rRNA, 1555 A> G, two at GJB2, 299delAT, and SLC26A4, IVS7-2A> G. All mutations as above were confirmed by DNA sequencing.
  
  
  CONCLUSIONS
  The total mutation carrier rate of the 4 deafness genes is 3.19% in healthy newborns at Chengdu. Mutations of GJB2 and SLAC26A4 are major ones (86.5% of total). The mutation rate of mitochondrial DNA 12S rRNA is 2.71‰, which may have deafness induced by aminoglycoside antibiotics. Newborn screening for mutation of genes related to hereditary deafness plays an important role in the early detection and proper management for neonatal deafness as well as genetic counseling for premarital, prenatal and postnatal diagnosis.
authors.affiliation: Chengdu Women's & Children's Central Hospital, Chengdu, Sichuan 610091, P.R.China. zhwzhang@capitalbio.com.
authors.forename: Kangmo
authors.initials: K
authors.lastname: Lyu
authors.forename: Yehua
authors.initials: Y
authors.lastname: Xiong
authors.forename: Hao
authors.initials: H
authors.lastname: Yu
authors.forename: Ling
authors.initials: L
authors.lastname: Zou
authors.forename: Longrong
authors.initials: L
authors.lastname: Ran
authors.forename: Deshun
authors.initials: D
authors.lastname: Liu
authors.forename: Qin
authors.initials: Q
authors.lastname: Yin
authors.forename: Yingwen
authors.initials: Y
authors.lastname: Xu
authors.forename: Xue
authors.initials: X
authors.lastname: Fang
authors.forename: Zuling
authors.initials: Z
authors.lastname: Song
authors.forename: Lijia
authors.initials: L
authors.lastname: Huang
authors.forename: Dayong
authors.initials: D
authors.lastname: Tan
authors.forename: Zhiwei
authors.initials: Z
authors.lastname: Zhang
mesh_terms: D044466:Asian People / Q000235:genetics; D001483:Base Sequence; D002681:China; D000072259:Connexin 26; D017630:Connexins / Q000235:genetics; D004252:DNA Mutational Analysis; D004272:DNA, Mitochondrial / Q000737:chemistry / Q000235:genetics; D003638:Deafness / Q000175:diagnosis / Q000208:ethnology / Q000235:genetics*; D059788:Dried Blood Spot Testing; D020022:Genetic Predisposition to Disease / Q000208:ethnology / Q000235:genetics*; D005820:Genetic Testing / Q000379:methods*; D006801:Humans; D007231:Infant, Newborn; D026901:Membrane Transport Proteins / Q000235:genetics; D046228:Microarray Analysis / Q000379:methods; D009154:Mutation; D015997:Neonatal Screening / Q000379:methods*; D012335:RNA, Ribosomal / Q000235:genetics; D000076988:Sulfate Transporters
chemical_list: D017630:Connexins; D004272:DNA, Mitochondrial; C000607042:GJB2 protein, human; D026901:Membrane Transport Proteins; D012335:RNA, Ribosomal; C075526:RNA, ribosomal, 12S; C085609:SLC26A4 protein, human; D000076988:Sulfate Transporters; D000072259:Connexin 26