title: Method for obtaining high-resolution proteomic analysis from pericarps of guarana.
abstract: Guarana has great agricultural potential and is largely used therapeutically and in the production of non-alcoholic energy drinks. Genomic and proteomic studies are crucial to identify proteins that play central roles in the maintenance and viability of fruits, as well as to identify proteins related to the main metabolic pathways. However, the success of any protein analysis starts with the protein extract preparation, which needs to offer an extract that is free of contaminants. This study aimed to evaluate different extraction methods to obtain high-quantity and high-quality extracts that are compatible with analysis by 2-dimensional electrophoresis and tandem mass spectrometry protein identification. Three different methods were tested: trichloroacetic acid (TCA)/acetone, sodium dodecyl sulfate (SDS)/phenol, and polyvinylpolypyrrolidone (PVPP)/SDS/phenol. The extract obtained from the TCA/acetone precipitation presented low solubility and contamination with lipids and carbohydrates. On the other hand, the quality of the extract gradually improved after using phenol and PVPP/phenol, enabling a yield up to 2 mg/g macerated tissues and the detection of 457 spots by 2-dimensional electrophoresis. The effectiveness of the procedure used was validated by identification of 10 randomly selected proteins by mass spectrometry. The procedure described here can be a starting point for applications using tissues of other organs of guarana or tissues of species that are similar to guarana.
authors.affiliation: Centro de Apoio Multidisciplinar, Laboratório de Biologia Molecular, Universidade Federal do Amazonas, Manaus, AM, Brasil.
authors.forename: A L
authors.initials: AL
authors.lastname: Souza
authors.affiliation: EMBRAPA Amazônia Ocidental, Manaus, AM, Brasil.
authors.forename: P C S
authors.initials: PC
authors.lastname: Angelo
authors.affiliation: Fundação Osvaldo Cruz, Manaus, AM, Brasil.
authors.forename: P P O
authors.initials: PP
authors.lastname: Nogueira
authors.affiliation: Instituto Nacional de Pesquisas da Amazônia, Manaus, AM, Brasil.
authors.forename: J F C
authors.initials: JF
authors.lastname: Gonçalves
authors.affiliation: Instituto Nacional de Pesquisas da Amazônia, Manaus, AM, Brasil.
authors.forename: A M
authors.initials: AM
authors.lastname: Franco
authors.affiliation: Centro de Apoio Multidisciplinar, Laboratório de Biologia Molecular, Universidade Federal do Amazonas, Manaus, AM, Brasil.
authors.forename: S
authors.initials: S
authors.lastname: Astolfi-Filho
authors.affiliation: Fundação de Medicina Tropical do Amazonas, Manaus, AM, Brasil.
authors.forename: J L
authors.initials: JL
authors.lastname: López-Lozano
authors.affiliation: Centro de Apoio Multidisciplinar, Laboratório de Biologia Molecular, Universidade Federal do Amazonas, Manaus, AM, Brasil edandrade@ufam.edu.br.
authors.forename: E V
authors.initials: EV
authors.lastname: Andrade
mesh_terms: D015180:Electrophoresis, Gel, Two-Dimensional; D032126:Paullinia / Q000737:chemistry*; D010940:Plant Proteins / Q000378:metabolism*; D040901:Proteomics; D021241:Spectrometry, Mass, Electrospray Ionization; D053719:Tandem Mass Spectrometry
chemical_list: D010940:Plant Proteins