title: Ion-channel genosensor for the detection of specific DNA sequences derived from Plum Pox Virus in plant extracts.
abstract: A DNA biosensor for detection of specific oligonucleotides sequences of Plum Pox Virus (PPV) in plant extracts and buffer is proposed. The working principles of a genosensor are based on the ion-channel mechanism. The NH2-ssDNA probe was deposited onto a glassy carbon electrode surface to form an amide bond between the carboxyl group of oxidized electrode surface and amino group from ssDNA probe. The analytical signals generated as a result of hybridization were registered in Osteryoung square wave voltammetry in the presence of [Fe(CN)6]3-/4- as a redox marker. The 22-mer and 42-mer complementary ssDNA sequences derived from PPV and DNA samples from plants infected with PPV were used as targets. Similar detection limits of 2.4 pM (31.0 pg/mL) and 2.3 pM (29.5 pg/mL) in the concentration range 1-8 pM were observed in the presence of the 22-mer ssDNA and 42-mer complementary ssDNA sequences of PPV, respectively. The genosensor was capable of discriminating between samples consisting of extracts from healthy plants and leaf extracts from infected plants in the concentration range 10-50 pg/mL. The detection limit was 12.8 pg/mL. The genosensor displayed good selectivity and sensitivity. The 20-mer partially complementary DNA sequences with four complementary bases and DNA samples from healthy plants used as negative controls generated low signal.
authors.affiliation: Institute of Animal Reproduction and Food Research, Polish Academy of Sciences, Tuwima 10, 10-748 Olsztyn, Poland. k.malecka@pan.olsztyn.pl.
authors.forename: Kamila
authors.initials: K
authors.lastname: Malecka
authors.affiliation: Research Institute of Horticulture, Konstytucji 3 Maja 1/3, 96-100 Skierniewice, Poland. lech.michalczuk@inhort.pl.
authors.forename: Lech
authors.initials: L
authors.lastname: Michalczuk
authors.affiliation: Institute of Animal Reproduction and Food Research, Polish Academy of Sciences, Tuwima 10, 10-748 Olsztyn, Poland. h.radecka@pan.olsztyn.pl.
authors.forename: Hanna
authors.initials: H
authors.lastname: Radecka
authors.affiliation: Institute of Animal Reproduction and Food Research, Polish Academy of Sciences, Tuwima 10, 10-748 Olsztyn, Poland. j.radecki@pan.olsztyn.pl.
authors.forename: Jerzy
authors.initials: J
authors.lastname: Radecki
mesh_terms: D001483:Base Sequence / Q000235:genetics; D015374:Biosensing Techniques; D004277:DNA, Single-Stranded / Q000235:genetics / Q000302:isolation & purification; D004279:DNA, Viral / Q000235:genetics / Q000302:isolation & purification*; D057230:Limit of Detection; D009693:Nucleic Acid Hybridization; D010936:Plant Extracts / Q000737:chemistry / Q000235:genetics; D017801:Plum Pox Virus / Q000235:genetics / Q000302:isolation & purification*
chemical_list: D004277:DNA, Single-Stranded; D004279:DNA, Viral; D010936:Plant Extracts