title: Adsorption mechanisms of RNA mononucleotides on silver nanoparticles.
abstract: Surface-enhanced Raman scattering (SERS) of four RNA mononucleotides (AMP, GMP, CMP and UMP) has been studied on the citrate-reduced silver colloid aggregated with sodium sulfate. Concentration dependent spectra in the range of 1×10(-7)-1×10(-4) mol dm(-3) were obtained, assigned and interpreted according to the surface selection rules. For purine mononucleotides, AMP and GMP, adsorption onto the silver nanoparticles through the six-membered ring of the nitrogenous base was suggested. Concentration dependent splitting of the ring breathing band in the spectra of AMP indicated coexistence of two species on the silver surface, which differed in contribution of the adenine N1 atom and the exocyclic NH2 group in binding. Unlike the AMP spectra, the spectra of GMP implied only one mode of adsorption of the molecules onto the silver nanoparticles, taking place through the guanine N1H and C=O group. Weak SERS spectra of pyrimidine mononucleotides, CMP and UMP, pointed to involvement of carbonyl oxygen in adsorption process, whereby the molecules adopted the position on the nanoparticles with ribose close to the metal surface. Intense bands in the low wavenumber region, associated with stretching of the formed Ag-N and/or Ag-O bonds, supported chemical binding of the RNA mononucleotides with the silver surface.
authors.affiliation: Division of Analytical Chemistry, Department of Chemistry, Faculty of Science, University of Zagreb, Horvatovac 102a, HR-10000 Zagreb, Croatia. Electronic address: miljanic@chem.pmf.hr.
authors.forename: Snežana
authors.initials: S
authors.lastname: Miljanić
authors.affiliation: Division of Analytical Chemistry, Department of Chemistry, Faculty of Science, University of Zagreb, Horvatovac 102a, HR-10000 Zagreb, Croatia.
authors.forename: Adriana
authors.initials: A
authors.lastname: Dijanošić
authors.affiliation: Division of Analytical Chemistry, Department of Chemistry, Faculty of Science, University of Zagreb, Horvatovac 102a, HR-10000 Zagreb, Croatia.
authors.forename: Ivona
authors.initials: I
authors.lastname: Matić
mesh_terms: D000249:Adenosine Monophosphate / Q000737:chemistry* / Q000302:isolation & purification; D000327:Adsorption; D003568:Cytidine Monophosphate / Q000737:chemistry* / Q000302:isolation & purification; D006157:Guanosine Monophosphate / Q000737:chemistry* / Q000302:isolation & purification; D053768:Metal Nanoparticles / Q000737:chemistry*; D008958:Models, Molecular; D012313:RNA / Q000737:chemistry / Q000302:isolation & purification; D012834:Silver / Q000737:chemistry*; D013059:Spectrum Analysis, Raman; D014542:Uridine Monophosphate / Q000737:chemistry* / Q000302:isolation & purification
chemical_list: D012834:Silver; D000249:Adenosine Monophosphate; D012313:RNA; D006157:Guanosine Monophosphate; D014542:Uridine Monophosphate; D003568:Cytidine Monophosphate
keywords: Adsorption; RNA mononucleotide; Silver; Surface-enhanced Raman spectroscopy