title: QM/MM methodology, docking and spectroscopic (FT-IR/FT-Raman, NMR, UV) and Fukui function analysis on adrenergic agonist.
abstract: The Fourier transform infrared, FT-Raman, UV and NMR spectra of Ternelin have been recorded and analyzed. Harmonic vibrational frequencies have been investigated with the help of HF with 6-31G (d,p) and B3LYP with 6-31G (d,p) and LANL2DZ basis sets. The (1)H and (13)C nuclear magnetic resonance (NMR) chemical shifts of the molecule were calculated by GIAO method. The polarizability (α) and the first hyperpolarizability (β) values of the investigated molecule have been computed using DFT quantum mechanical calculations. Stability of the molecule arising from hyper conjugative interactions, and charge delocalization has been analyzed using natural bond orbital (NBO) analysis. The electron density-based local reactivity descriptors such as Fukui functions were calculated to explain the chemical selectivity or reactivity site in Ternelin. Finally the calculated results were compared to simulated infrared and Raman spectra of the title compound which show good agreement with observed spectra. Molecular docking studies have been carried out in the active site of Ternelin and reactivity with ONIOM was also investigated.
authors.affiliation: Department of Physics, Sree Sastha Institute of Engg and Technology, Chembarabakkam, Chennai, Tamil Nadu, India. Electronic address: umas.umas@gmail.com.
authors.forename: J
authors.initials: J
authors.lastname: Uma Maheswari
authors.affiliation: Department of Physics, Sri Venkateswara College of Engineering, Pennalur, Tamil Nadu, India.
authors.forename: S
authors.initials: S
authors.lastname: Muthu
authors.affiliation: Department of Physics, University of Helsinki, P.O. Box 64, FIN-00014 Helsinki, Finland.
authors.forename: Tom
authors.initials: T
authors.lastname: Sundius
mesh_terms: D000322:Adrenergic Agonists / Q000737:chemistry*; D003198:Computer Simulation; D006571:Heterocyclic Compounds / Q000737:chemistry*; D006859:Hydrogen / Q000737:chemistry; D006860:Hydrogen Bonding; D007093:Imidazoles / Q000737:chemistry*; D009682:Magnetic Resonance Spectroscopy; D008958:Models, Molecular; D008968:Molecular Conformation; D011789:Quantum Theory; D013056:Spectrophotometry, Ultraviolet; D017550:Spectroscopy, Fourier Transform Infrared; D014732:Vibration
chemical_list: D000322:Adrenergic Agonists; D006571:Heterocyclic Compounds; D007093:Imidazoles; C000600911:ternelin; D006859:Hydrogen
keywords: 2, 3 Layer; Docking; Fukui function; Hydrogen bonding; NBO; NCA