title: Community profiling of culturable fluorescent pseudomonads in the rhizosphere of green gram (Vigna radiata L.).
abstract: Study on microbial diversity in the unexplored rhizosphere is important to understand their community structure, biology and ecological interaction with the host plant. This research assessed the genetic and functional diversity of fluorescent pseudomonads [FP] in the green gram rhizophere. One hundred and twenty types of morphologically distinct fluorescent pseudomonads were isolated during vegetative as well as reproductive growth phase of green gram. Rep PCR, ARDRA and RISA revealed two distinct clusters in each case at 75, 61 and 70% similarity coefficient index respectively. 16S rRNA partial sequencing analysis of 85 distantly related fluorescent pseudomonads depicted Pseudomonas aeruginosa as the dominant group. Out of 120 isolates, 23 (19%) showed antagonistic activity towards phytopathogenic fungi. These bacterial isolates showed varied production of salicylic acid, HCN and chitinase, 2, 4-diacetylphloroglucinol (DAPG), phenazine-1-carboxylic acid (PCA) and pyoluteorin (PLT). Production efficiency of inherent level of plant growth promoting (PGP) traits among the 120 isolates demonstrated that 10 (8%) solubilised inorganic phosphates, 25 (20%) produced indoles and 5 (4%) retained ACC deaminase activity. Pseudomonas aeruginosa GGRJ21 showed the highest production of all antagonistic and plant growth promoting (PGP) traits. In a greenhouse experiment, GGRJ21 suppressed root rot disease of green gram by 28-93% (p = 0.05). Consistent up regulation of three important stress responsive genes, i.e., acdS, KatA and gbsA and elevated production efficiency of different PGP traits could promote GGRJ21 as a potent plant growth regulator.
authors.affiliation: Biotechnology Division, CSIR-North East Institute of Science and Technology, Jorhat, Assam, India.
authors.forename: Rupak K
authors.initials: RK
authors.lastname: Sarma
authors.affiliation: Biotechnology Division, CSIR-North East Institute of Science and Technology, Jorhat, Assam, India.
authors.forename: Animesh
authors.initials: A
authors.lastname: Gogoi
authors.affiliation: Department of Agricultural Biotechnology, Assam Agricultural University, Jorhat, Assam, India.
authors.forename: Budheswar
authors.initials: B
authors.lastname: Dehury
authors.affiliation: Biotechnology Division, CSIR-North East Institute of Science and Technology, Jorhat, Assam, India.
authors.forename: Rajal
authors.initials: R
authors.lastname: Debnath
authors.affiliation: Biotechnology Division, CSIR-North East Institute of Science and Technology, Jorhat, Assam, India.
authors.forename: Tarun C
authors.initials: TC
authors.lastname: Bora
authors.affiliation: Biotechnology Division, CSIR-North East Institute of Science and Technology, Jorhat, Assam, India.
authors.forename: Ratul
authors.initials: R
authors.lastname: Saikia
mesh_terms: D044822:Biodiversity; D016172:DNA Fingerprinting; D005800:Genes, Fungal; D054892:Metagenome; D008826:Microbial Sensitivity Tests; D009997:Osmotic Pressure; D010641:Phenotype; D010802:Phylogeny; D011549:Pseudomonas / Q000145:classification / Q000187:drug effects / Q000235:genetics* / Q000302:isolation & purification / Q000378:metabolism*; D019655:Quantitative Trait, Heritable; D058441:Rhizosphere; D012988:Soil Microbiology; D013312:Stress, Physiological / Q000235:genetics