title: Distance-decay and taxa-area relationships for bacteria, archaea and methanogenic archaea in a tropical lake sediment.
abstract: The study of of the distribution of microorganisms through space (and time) allows evaluation of biogeographic patterns, like the species-area index (z). Due to their high dispersal ability, high reproduction rates and low rates of extinction microorganisms tend to be widely distributed, and they are thought to be virtually cosmopolitan and selected primarily by environmental factors. Recent studies have shown that, despite these characteristics, microorganisms may behave like larger organisms and exhibit geographical distribution. In this study, we searched patterns of spatial diversity distribution of bacteria and archaea in a contiguous environment. We collected 26 samples of a lake sediment, distributed in a nested grid, with distances between samples ranging from 0.01 m to 1000 m. The samples were analyzed using T-RFLP (Terminal restriction fragment length polymorphism) targeting mcrA (coding for a subunit of methyl-coenzyme M reductase) and the genes of Archaeal and Bacterial 16S rRNA. From the qualitative and quantitative results (relative abundance of operational taxonomic units) we calculated the similarity index for each pair to evaluate the taxa-area and distance decay relationship slopes by linear regression. All results were significant, with mcrA genes showing the highest slope, followed by Archaeal and Bacterial 16S rRNA genes. We showed that the microorganisms of a methanogenic community, that is active in a contiguous environment, display spatial distribution and a taxa-area relationship.
authors.affiliation: Instituto de Microbiologia Prof. Paulo de Góes, Universidade Federal do Rio de Janeiro, Rio de Janeiro, Brazil.
authors.forename: Davi Pedroni
authors.initials: DP
authors.lastname: Barreto
authors.affiliation: Max-Planck Institute for Terrestrial Microbiology, Marburg, Hessen, Germany.
authors.forename: Ralf
authors.initials: R
authors.lastname: Conrad
authors.affiliation: Max-Planck Institute for Terrestrial Microbiology, Marburg, Hessen, Germany.
authors.forename: Melanie
authors.initials: M
authors.lastname: Klose
authors.affiliation: Max-Planck Institute for Terrestrial Microbiology, Marburg, Hessen, Germany.
authors.forename: Peter
authors.initials: P
authors.lastname: Claus
authors.affiliation: Instituto de Biologia, Universidade Federal do Rio de Janeiro, Rio de Janeiro, Brazil; Department of Water and Environmental Studies, Linköping University, Linköping, Sweden.
authors.forename: Alex
authors.initials: A
authors.lastname: Enrich-Prast
mesh_terms: D001105:Archaea / Q000145:classification* / Q000235:genetics / Q000378:metabolism*; D001419:Bacteria / Q000145:classification* / Q000235:genetics; D019015:Geologic Sediments / Q000382:microbiology*; D060106:Lakes / Q000382:microbiology*; D008697:Methane / Q000096:biosynthesis*; D010802:Phylogeny; D012150:Polymorphism, Restriction Fragment Length; D012336:RNA, Ribosomal, 16S / Q000235:genetics
chemical_list: D012336:RNA, Ribosomal, 16S; D008697:Methane