title: Support Vector Feature Selection for Early Detection of Anastomosis Leakage From Bag-of-Words in Electronic Health Records.
abstract: The free text in electronic health records (EHRs) conveys a huge amount of clinical information about health state and patient history. Despite a rapidly growing literature on the use of machine learning techniques for extracting this information, little effort has been invested toward feature selection and the features' corresponding medical interpretation. In this study, we focus on the task of early detection of anastomosis leakage (AL), a severe complication after elective surgery for colorectal cancer (CRC) surgery, using free text extracted from EHRs. We use a bag-of-words model to investigate the potential for feature selection strategies. The purpose is earlier detection of AL and prediction of AL with data generated in the EHR before the actual complication occur. Due to the high dimensionality of the data, we derive feature selection strategies using the robust support vector machine linear maximum margin classifier, by investigating: 1) a simple statistical criterion (leave-one-out-based test); 2) an intensive-computation statistical criterion (Bootstrap resampling); and 3) an advanced statistical criterion (kernel entropy). Results reveal a discriminatory power for early detection of complications after CRC (sensitivity 100%; specificity 72%). These results can be used to develop prediction models, based on EHR data, that can support surgeons and patients in the preoperative decision making phase.
authors.forename: Cristina
authors.initials: C
authors.lastname: Soguero-Ruiz
authors.forename: Kristian
authors.initials: K
authors.lastname: Hindberg
authors.forename: Jose Luis
authors.initials: JL
authors.lastname: Rojo-Alvarez
authors.forename: Stein Olav
authors.initials: SO
authors.lastname: Skrovseth
authors.forename: Fred
authors.initials: F
authors.lastname: Godtliebsen
authors.forename: Kim
authors.initials: K
authors.lastname: Mortensen
authors.forename: Arthur
authors.initials: A
authors.lastname: Revhaug
authors.forename: Rolv-Ole
authors.initials: RO
authors.lastname: Lindsetmo
authors.forename: Knut Magne
authors.initials: KM
authors.lastname: Augestad
authors.forename: Robert
authors.initials: R
authors.lastname: Jenssen
mesh_terms: D057868:Anastomotic Leak / Q000175:diagnosis*; D016000:Cluster Analysis; D015179:Colorectal Neoplasms / Q000601:surgery; D057286:Electronic Health Records; D006801:Humans; D008490:Medical Informatics / Q000379:methods*; D060388:Support Vector Machine