title: A metagenomic study of the microbial communities in four parallel biogas reactors.
abstract: BACKGROUND
  Biogas is a renewable energy carrier which is used for heat and power production or, in the form of purified methane, as a vehicle fuel. The formation of methane from organic materials is carried out by a mixed microbial community under anaerobic conditions. However, details about the microbes involved and their function are limited. In this study we compare the metagenomes of four parallel biogas reactors digesting a protein-rich substrate, relate microbiology to biogas performance, and observe differences in these reactors' microbial communities compared to the original inoculum culture.
  
  
  RESULTS
  The biogas process performance during the startup phase of four parallel continuous stirred tank reactors (designated R1, R2, R3, and R4) co-digesting fish waste and cow manure was studied. The microbial composition of the inoculum (day 0) and the four reactors at day 59 was studied and compared using 454 FLX Titanium pyrosequencing. In the inoculum and the reactor samples, the Bacteria Clostridium and Syntrophomonas were highly abundant, and the dominating methanogen was the hydrogenotrophic Methanoculleus. Syntrophic prokaryotes frequently found in biogas reactors with high concentrations of ammonium and volatile fatty acids were detected in all samples. The species Candidatus Cloacimonas acidaminovorans of the candidate phylum Cloacimonetes (WWE1) increased in all reactors and was the dominating bacterium at day 59. In particular, this bacterium showed a very high abundance in R1, which distinguished this reactor significantly from the other reactors in terms of microbial composition. Methane production and the reactor slurry characteristics were monitored in the digestion period. Generally all four reactors operated stably and showed rather similar characteristics. The average methane production in the reactors varied between 0.278 and 0.296 L gVS(-1), with the lowest production in R1.
  
  
  CONCLUSIONS
  This study showed that four parallel reactors co-digesting manure and fish waste silage operated stably during a startup phase. Several important Archaea and Bacteria degrading the protein-rich substrate were identified. In particular, microorganisms involved in syntrophic methane production seemed to be important. The detailed characterization of the microbial communities presented in this work may be useful for the operation of biogas plants degrading substrates with high concentrations of proteins.
authors.affiliation: Bioforsk, Norwegian Institute for Agricultural and Environmental Research, Frederik A. Dahls vei 20, 1432 Ås ᅟ, Norway.
authors.forename: Linn
authors.initials: L
authors.lastname: Solli
authors.affiliation: Department of Microbiology, Oslo University Hospital, P.O. Box 4950, Nydalen, 0424 Oslo, Norway.
authors.forename: Othilde Elise
authors.initials: OE
authors.lastname: Håvelsrud
authors.affiliation: Department of Chemistry, Biotechnology and Food Science, Norwegian University of Life Sciences, P.O. Box 5003, N-1432, Ås ᅟ, Norway.
authors.forename: Svein Jarle
authors.initials: SJ
authors.lastname: Horn
authors.affiliation: Norwegian Geotechnical Institute, Sognsveien 72, P.O. Box 3930, Ullevål Stadion, N-0806 Oslo, Norway.
authors.forename: Anne Gunn
authors.initials: AG
authors.lastname: Rike
keywords: Anaerobic digestion; Biofuel; Biogas; Biorefinery; Metagenomic; Methane; Syntrophic oxidation; Taxonomic structure