title: Excited states in DNA strands investigated by ultrafast laser spectroscopy.
abstract: Ultrafast laser experiments on carefully selected DNA model compounds probe the effects of base stacking, base pairing, and structural disorder on excited electronic states formed by UV absorption in single and double DNA strands. Direct π-orbital overlap between two stacked bases in a dinucleotide or in a longer single strand creates new excited states that decay orders of magnitude more slowly than the generally subpicosecond excited states of monomeric bases. Half or more of all excited states in single strands decay in this manner. Ultrafast mid-IR transient absorption experiments reveal that the long-lived excited states in a number of model compounds are charge transfer states formed by interbase electron transfer, which subsequently decay by charge recombination. The lifetimes of the charge transfer states are surprisingly independent of how the stacked bases are oriented, but disruption of π-stacking, either by elevating temperature or by adding a denaturing co-solvent, completely eliminates this decay channel. Time-resolved emission measurements support the conclusion that these states are populated very rapidly from initial excitons. These experiments also reveal the existence of populations of emissive excited states that decay on the nanosecond time scale. The quantum yield of these states is very small for UVB/UVC excitation, but increases at UVA wavelengths. In double strands, hydrogen bonding between bases perturbs, but does not quench, the long-lived excited states. Kinetic isotope effects on the excited-state dynamics suggest that intrastrand electron transfer may couple to interstrand proton transfer. By revealing how structure and non-covalent interactions affect excited-state dynamics, on-going experimental and theoretical studies of excited states in DNA strands can advance understanding of fundamental photophysics in other nanoscale systems.
authors.affiliation: Department of Chemistry and Biochemistry, Montana State University, Bozeman, MT, 59717, USA.
authors.forename: Jinquan
authors.initials: J
authors.lastname: Chen
authors.forename: Yuyuan
authors.initials: Y
authors.lastname: Zhang
authors.forename: Bern
authors.initials: B
authors.lastname: Kohler
mesh_terms: D000225:Adenine / Q000737:chemistry / Q000528:radiation effects*; D020029:Base Pairing / Q000528:radiation effects; D003596:Cytosine / Q000737:chemistry / Q000528:radiation effects*; D004247:DNA / Q000737:chemistry / Q000528:radiation effects*; D004277:DNA, Single-Stranded / Q000737:chemistry / Q000528:radiation effects; D004735:Energy Transfer; D006147:Guanine / Q000737:chemistry / Q000528:radiation effects*; D007834:Lasers; D009690:Nucleic Acid Conformation; D055668:Photochemical Processes; D011522:Protons; D013057:Spectrum Analysis; D013941:Thymine / Q000737:chemistry / Q000528:radiation effects*; D013997:Time Factors; D014466:Ultraviolet Rays; D014498:Uracil / Q000737:chemistry / Q000528:radiation effects*
chemical_list: D004277:DNA, Single-Stranded; D011522:Protons; D014498:Uracil; D006147:Guanine; D003596:Cytosine; D004247:DNA; D000225:Adenine; D013941:Thymine