title: High throughput tools to access images from clinical archives for research.
abstract: Historically, medical images collected in the course of clinical care have been difficult to access for secondary research studies. While there is a tremendous potential value in the large volume of studies contained in clinical image archives, Picture Archiving and Communication Systems (PACS) are designed to optimize clinical operations and workflow. Search capabilities in PACS are basic, limiting their use for population studies, and duplication of archives for research is costly. To address this need, we augment the Informatics for Integrating Biology and the Bedside (i2b2) open source software, providing investigators with the tools necessary to query and integrate medical record and clinical research data. Over 100 healthcare institutions have installed this suite of software tools that allows investigators to search medical record metadata including images for specific types of patients. In this report, we describe a new Medical Imaging Informatics Bench to Bedside (mi2b2) module ( www.mi2b2.org ), available now as an open source addition to the i2b2 software platform that allows medical imaging examinations collected during routine clinical care to be made available to translational investigators directly from their institution's clinical PACS for research and educational use in compliance with the Health Insurance Portability and Accountability Act (HIPAA) Omnibus Rule. Access governance within the mi2b2 module is customizable per institution and PACS minimizing impact on clinical systems. Currently in active use at our institutions, this new technology has already been used to facilitate access to thousands of clinical MRI brain studies representing specific patient phenotypes for use in research.
authors.affiliation: Research IS and Computing, Partners HealthCare, Charlestown, MA, 02129, USA, snmurphy@partners.org.
authors.forename: Shawn N
authors.initials: SN
authors.lastname: Murphy
authors.forename: Christopher
authors.initials: C
authors.lastname: Herrick
authors.forename: Yanbing
authors.initials: Y
authors.lastname: Wang
authors.forename: Taowei David
authors.initials: TD
authors.lastname: Wang
authors.forename: Darren
authors.initials: D
authors.lastname: Sack
authors.forename: Katherine P
authors.initials: KP
authors.lastname: Andriole
authors.forename: Jesse
authors.initials: J
authors.lastname: Wei
authors.forename: Nathaniel
authors.initials: N
authors.lastname: Reynolds
authors.forename: Wendy
authors.initials: W
authors.lastname: Plesniak
authors.forename: Bruce R
authors.initials: BR
authors.lastname: Rosen
authors.forename: Steven
authors.initials: S
authors.lastname: Pieper
authors.forename: Randy L
authors.initials: RL
authors.lastname: Gollub
mesh_terms: D035843:Biomedical Research / Q000458:organization & administration*; D003952:Diagnostic Imaging / Q000379:methods; D006801:Humans; D016247:Information Storage and Retrieval; D016347:Medical Records Systems, Computerized / Q000458:organization & administration*; D009936:Organizational Innovation; D058996:Quality Improvement; D011873:Radiology Information Systems / Q000458:organization & administration*; D018511:Systems Integration