title: [Genetic characterization of the Sakhalin virus (SAKV), Paramushir virus (PMRV) (Sakhalin group, Nairovirus, Bunyaviridae), and Rukutama virus (RUKV) (Uukuniemi group, Phlebovirus, Bunyaviridae) isolated from the obligate parasites of the colonial sea-birds ticks Ixodes (Ceratixodes) uriae, White 1852 and I. signatus Birulya, 1895 in the water area of sea of the Okhotsk and Bering sea].
abstract: Full-length genomes of the Sakhalin virus (SAKH) and Paramushir virus (PRMV) (Sakhalin group, Nairovirus, Bunyaviridae) isolated from the ticks Ixodes uriae White 1852 were sequenced using the next-generation sequencing (Genbank ID: KF801659, KF801656). SAKV and PRMV have 81% identity for the part of RNA-dependent RNA-polymerase (RdRp) on the nucleotide level and 98.5% on the amino acid level. Full-length genome comparison shows that SAKV have, in average, from 25% (N-protein, S-segment) to 50% (RdRp, L-segment) similarity with the nairoviruses. The maximum value of the amino acid similarity (50.3% for RdRp) SAKV have with the Crimean-Congo hemorrhagic fever virus (CCHFV) and Dugbe virus (DUGV), which are also associated with the Ixodidae ticks. Another virus studied is Rukutama virus (RUKV) (isolated from ticks I. signatus Birulya, 1895) that recently was classified (based on morphology and antigenic reaction) to the Nairovirus genus, presumably to the Sakhalin group. In this work the genome of the RUKV was sequenced (KF892052-KF892054) and RUKV was classified as a member of the Uukuniemi group (Phlebovirus, Bunyaviridae). RUKV is closely related (93.0-95.5% similarity) with our previously described Komandory virus (KOMV). RUKV and KOMV form separate phylogenetic line neighbor of Manawa virus (MWAV) isolated from the ticks Argas abdussalami Hoogstraal et McCarthy, 1965 in Pakistan. The value of the similarity between RUCV and MWAV is 65-74% on the amino acid level.
authors.forename: D K
authors.initials: DK
authors.lastname: L'vov
authors.forename: S V
authors.initials: SV
authors.lastname: Al'khovskiĭ
authors.forename: M Iu
authors.initials: MIu
authors.lastname: Shchelkanov
authors.forename: A M
authors.initials: AM
authors.lastname: Shchetinin
authors.forename: P G
authors.initials: PG
authors.lastname: Deriabin
authors.forename: V A
authors.initials: VA
authors.lastname: Aristova
authors.forename: A K
authors.initials: AK
authors.lastname: Gitel'man
authors.forename: E I
authors.initials: EI
authors.lastname: Samokhvalov
authors.forename: A G
authors.initials: AG
authors.lastname: Botikov
mesh_terms: D000595:Amino Acid Sequence; D000818:Animals; D001483:Base Sequence; D001715:Bird Diseases / Q000821:virology*; D001717:Birds / Q000469:parasitology / Q000821:virology*; D002044:Bunyaviridae Infections / Q000662:veterinary* / Q000821:virology; D016679:Genome, Viral; D018884:Ixodes / Q000821:virology*; D008969:Molecular Sequence Data; D016855:Nairovirus / Q000145:classification / Q000235:genetics* / Q000302:isolation & purification; D010140:Pacific Ocean; D016856:Phlebovirus / Q000145:classification / Q000235:genetics* / Q000302:isolation & purification; D010802:Phylogeny; D012426:Russia; D017386:Sequence Homology, Amino Acid