title: Global Hopf bifurcation in the ZIP regulatory system.
abstract: Regulation of zinc uptake in roots of Arabidopsis thaliana has recently been modeled by a system of ordinary differential equations based on the uptake of zinc, expression of a transporter protein and the interaction between an activator and inhibitor. For certain parameter choices the steady state of this model becomes unstable upon variation in the external zinc concentration. Numerical results show periodic orbits emerging between two critical values of the external zinc concentration. Here we show the existence of a global Hopf bifurcation with a continuous family of stable periodic orbits between two Hopf bifurcation points. The stability of the orbits in a neighborhood of the bifurcation points is analyzed by deriving the normal form, while the stability of the orbits in the global continuation is shown by calculation of the Floquet multipliers. From a biological point of view, stable periodic orbits lead to potentially toxic zinc peaks in plant cells. Buffering is believed to be an efficient way to deal with strong transient variations in zinc supply. We extend the model by a buffer reaction and analyze the stability of the steady state in dependence of the properties of this reaction. We find that a large enough equilibrium constant of the buffering reaction stabilizes the steady state and prevents the development of oscillations. Hence, our results suggest that buffering has a key role in the dynamics of zinc homeostasis in plant cells.
authors.affiliation: Interdisciplinary Center for Scientific Computing, Heidelberg University, Heidelberg, Germany, juliane.claus@bioquant.uni-heidelberg.de.
authors.forename: Juliane
authors.initials: J
authors.lastname: Claus
authors.forename: Mariya
authors.initials: M
authors.lastname: Ptashnyk
authors.forename: Ansgar
authors.initials: A
authors.lastname: Bohmann
authors.forename: Andrés
authors.initials: A
authors.lastname: Chavarría-Krauser
mesh_terms: D017360:Arabidopsis / Q000187:drug effects / Q000378:metabolism; D029681:Arabidopsis Proteins / Q000378:metabolism*; D001693:Biological Transport, Active; D002352:Carrier Proteins / Q000378:metabolism; D055641:Mathematical Concepts; D008954:Models, Biological; D014157:Transcription Factors / Q000378:metabolism*; D015032:Zinc / Q000378:metabolism* / Q000633:toxicity
chemical_list: D029681:Arabidopsis Proteins; D002352:Carrier Proteins; D014157:Transcription Factors; C453735:ZIP protein, Arabidopsis; C017800:zinc-binding protein; D015032:Zinc