title: The integrated microbial genome resource of analysis.
abstract: Integrated Microbial Genomes and Metagenomes (IMG) is a biocomputational system that allows to provide information and support for annotation and comparative analysis of microbial genomes and metagenomes. IMG has been developed by the US Department of Energy (DOE)-Joint Genome Institute (JGI). IMG platform contains both draft and complete genomes, sequenced by Joint Genome Institute and other public and available genomes. Genomes of strains belonging to Archaea, Bacteria, and Eukarya domains are present as well as those of viruses and plasmids. Here, we provide some essential features of IMG system and case study for pangenome analysis.
authors.affiliation: Department of Biology, University of Florence, via della Madonna del Piano 6, 50019, Sesto Fiorentino, Firenze, Italy.
authors.forename: Alice
authors.initials: A
authors.lastname: Checcucci
authors.forename: Alessio
authors.initials: A
authors.lastname: Mengoni
mesh_terms: D001105:Archaea / Q000235:genetics; D001419:Bacteria / Q000235:genetics; D003628:Database Management Systems; D056890:Eukaryota / Q000235:genetics; D064349:Genome, Microbial; D056186:Metagenomics / Q000379:methods* / Q000706:statistics & numerical data; D010957:Plasmids / Q000737:chemistry; D012984:Software; D026801:Synteny; D014481:United States