title: Approximate von Neumann entropy for directed graphs.
abstract: In this paper, we develop an entropy measure for assessing the structural complexity of directed graphs. Although there are many existing alternative measures for quantifying the structural properties of undirected graphs, there are relatively few corresponding measures for directed graphs. To fill this gap in the literature, we explore an alternative technique that is applicable to directed graphs. We commence by using Chung's generalization of the Laplacian of a directed graph to extend the computation of von Neumann entropy from undirected to directed graphs. We provide a simplified form of the entropy which can be expressed in terms of simple node in-degree and out-degree statistics. Moreover, we find approximate forms of the von Neumann entropy that apply to both weakly and strongly directed graphs, and that can be used to characterize network structure. We illustrate the usefulness of these simplified entropy forms defined in this paper on both artificial and real-world data sets, including structures from protein databases and high energy physics theory citation networks.
authors.affiliation: Department of Computer Science, University of York, York, YO10 5GH, United Kingdom.
authors.forename: Cheng
authors.initials: C
authors.lastname: Ye
authors.affiliation: Department of Computer Science, University of York, York, YO10 5GH, United Kingdom.
authors.forename: Richard C
authors.initials: RC
authors.lastname: Wilson
authors.affiliation: Institute of Physics at São Carlos, University of São Paulo, PO Box 369, São Carlos, São Paulo, 13560-970, Brazil.
authors.forename: César H
authors.initials: CH
authors.lastname: Comin
authors.affiliation: Institute of Physics at São Carlos, University of São Paulo, PO Box 369, São Carlos, São Paulo, 13560-970, Brazil.
authors.forename: Luciano da F
authors.initials: Lda F
authors.lastname: Costa
authors.affiliation: Department of Computer Science, University of York, York, YO10 5GH, United Kingdom.
authors.forename: Edwin R
authors.initials: ER
authors.lastname: Hancock
mesh_terms: D000465:Algorithms; D000818:Animals; D003198:Computer Simulation; D019277:Entropy; D006801:Humans; D053858:Metabolic Networks and Pathways / Q000502:physiology*; D008954:Models, Biological; D015233:Models, Statistical; D025941:Protein Interaction Mapping / Q000379:methods*; D020543:Proteome / Q000378:metabolism*
chemical_list: D020543:Proteome