title: Genetic association of TCF4 intronic polymorphisms, CTG18.1 and rs17089887, with Fuchs' endothelial corneal dystrophy in an Indian population.
abstract: OBJECTIVE
  To assess the genetic association of transcription factor 4 (TCF4) intronic polymorphisms and CTG18.1 allele in individuals with Fuchs' endothelial corneal dystrophy (FECD) individuals from a sample Indian population.
  
  
  METHODS
  Forty-four FECD patients and 108 unrelated age-matched controls were recruited with informed consent for this study. Three, single nucleotide polymorphisms (SNPs) spanning the third intronic region of TCF4 (rs613872, rs17089887, and rs17089925) and an unstable trinucleotide repeat CTG18.1 allele were genotyped by direct sequencing using Sanger's method. The association of polymorphisms was analyzed using χ(2) test and logistic regression.
  
  
  RESULTS
  SNP rs17089887 (P = 0.013) and CTG18.1 (P = 2 × 10(-4)) alleles were found to be significantly associated with FECD in the sample Indian population. However, the other two SNPs, rs613872 and rs17089925, were not likewise associated. Thirty-four percent of FECD subjects and 5% of control individuals harbor more than 50 trinucleotide repeats, which was considered as the disease threshold.
  
  
  CONCLUSIONS
  TCF4 poses a major contributor to FECD manifestation globally, with a significant association of rs17089887 and CTG18.1 allele in the Indian population.
authors.affiliation: School of Biological Sciences, National Institute of Science Education and Research, Bhubaneswar, India.
authors.forename: Gargi Gouranga
authors.initials: GG
authors.lastname: Nanda
authors.affiliation: School of Biological Sciences, National Institute of Science Education and Research, Bhubaneswar, India.
authors.forename: Biswajit
authors.initials: B
authors.lastname: Padhy
authors.affiliation: Cornea and Anterior Segment Services, L. V. Prasad Eye Institute, Bhubaneswar, India.
authors.forename: Sujata
authors.initials: S
authors.lastname: Samal
authors.affiliation: Cornea and Anterior Segment Services, L. V. Prasad Eye Institute, Bhubaneswar, India.
authors.forename: Sujata
authors.initials: S
authors.lastname: Das
authors.affiliation: School of Biological Sciences, National Institute of Science Education and Research, Bhubaneswar, India.
authors.forename: Debasmita Pankaj
authors.initials: DP
authors.lastname: Alone
mesh_terms: D000328:Adult; D000368:Aged; D000369:Aged, 80 and over; D051778:Basic Helix-Loop-Helix Leucine Zipper Transcription Factors / Q000235:genetics* / Q000378:metabolism; D004247:DNA / Q000235:genetics*; D005500:Follow-Up Studies; D005642:Fuchs' Endothelial Dystrophy / Q000453:epidemiology / Q000235:genetics* / Q000378:metabolism; D020022:Genetic Predisposition to Disease; D005838:Genotype; D006801:Humans; D007194:India / Q000453:epidemiology; D007438:Introns; D008297:Male; D008875:Middle Aged; D016133:Polymerase Chain Reaction; D011110:Polymorphism, Genetic; D015995:Prevalence; D000073940:Transcription Factor 4; D014157:Transcription Factors / Q000235:genetics* / Q000378:metabolism
chemical_list: D051778:Basic Helix-Loop-Helix Leucine Zipper Transcription Factors; C532096:TCF4 protein, human; D000073940:Transcription Factor 4; D014157:Transcription Factors; D004247:DNA
keywords: Fuchs' dystrophy; SNP; TCF4; genetic association