title: Myofibre segmentation in H&E stained adult skeletal muscle images using coherence-enhancing diffusion filtering.
abstract: BACKGROUND
  The correct segmentation of myofibres in histological muscle biopsy images is a critical step in the automatic analysis process. Errors occurring as a result of incorrect segmentations have a compounding effect on latter morphometric analysis and as such it is vital that the fibres are correctly segmented. This paper presents a new automatic approach to myofibre segmentation in H&E stained adult skeletal muscle images that is based on Coherence-Enhancing Diffusion filtering.
  
  
  METHODS
  The procedure can be broadly divided into four steps: 1) pre-processing of the images to extract only the eosinophilic structures, 2) performing of Coherence-Enhancing Diffusion filtering to enhance the myofibre boundaries whilst smoothing the interior regions, 3) morphological filtering to connect unconnected boundary regions and remove noise, and 4) marker controlled watershed transform to split touching fibres.
  
  
  RESULTS
  The method has been tested on a set of adult cases with a total of 2,832 fibres. Evaluation was done in terms of segmentation accuracy and other clinical metrics.
  
  
  CONCLUSIONS
  The results show that the proposed approach achieves a segmentation accuracy of 89% which is a significant improvement over existing methods.
authors.affiliation: Department of Computer Science, Aberystwyth University, Penglais Campus, SY23 3DB Aberystwyth, UK. hgs08@aber.ac.uk.
authors.forename: Harry
authors.initials: H
authors.lastname: Strange
authors.forename: Ian
authors.initials: I
authors.lastname: Scott
authors.forename: Reyer
authors.initials: R
authors.lastname: Zwiggelaar
mesh_terms: D000328:Adult; D000465:Algorithms; D001706:Biopsy; D004801:Eosine Yellowish-(YS); D006416:Hematoxylin; D006801:Humans; D007091:Image Processing, Computer-Assisted / Q000379:methods*; D018485:Muscle Fibers, Skeletal / Q000166:cytology*; D013194:Staining and Labeling
chemical_list: D004801:Eosine Yellowish-(YS); D006416:Hematoxylin