Reconstruction of biofilm images: combining local and global structural parameters.
Digitized images can be used for quantitative comparison of biofilms grown under different conditions. Using biofilm image reconstruction, it was previously found that biofilms with a completely different look can have nearly identical structural parameters and that the most commonly utilized global structural parameters were not sufficient to uniquely define these biofilms. Here, additional local and global parameters are introduced to show that these parameters considerably increase the reliability of the image reconstruction process. Assessment using human evaluators indicated that the correct identification rate of the reconstructed images increased from 50% to 72% with the introduction of the new parameters into the reconstruction procedure. An expanded set of parameters especially improved the identification of biofilm structures with internal orientational features and of structures in which colony sizes and spatial locations varied. Hence, the newly introduced structural parameter sets helped to better classify the biofilms by incorporating finer local structural details into the reconstruction process.
a The Gene and Linda Voiland School of Chemical Engineering and Bioengineering , Washington State University , Pullman , WA , USA.
Haluk
H
Resat
Ryan S
RS
Renslow
Haluk
H
Beyenal
D000465:Algorithms; D018441:Biofilms / Q000254:growth & development*; D016000:Cluster Analysis; D007091:Image Processing, Computer-Assisted; D012984:Software
biofilm; image; image analysis; local structure; quantification; reconstruction; structure