title: Enzymatic strategies and biocatalysts for amide bond formation: tricks of the trade outside of the ribosome.
abstract: Amide bond-containing (ABC) biomolecules are some of the most intriguing and functionally significant natural products with unmatched utility in medicine, agriculture and biotechnology. The enzymatic formation of an amide bond is therefore a particularly interesting platform for engineering the synthesis of structurally diverse natural and unnatural ABC molecules for applications in drug discovery and molecular design. As such, efforts to unravel the mechanisms involved in carboxylate activation and substrate selection has led to the characterization of a number of structurally and functionally distinct protein families involved in amide bond synthesis. Unlike ribosomal synthesis and thio-templated synthesis using nonribosomal peptide synthetases, which couple the hydrolysis of phosphoanhydride bond(s) of ATP and proceed via an acyl-adenylate intermediate, here we discuss two mechanistically alternative strategies: ATP-dependent enzymes that generate acylphosphate intermediates and ATP-independent transacylation strategies. Several examples highlighting the function and synthetic utility of these amide bond-forming strategies are provided.
authors.affiliation: Department of Pharmaceutical Sciences, College of Pharmacy, University of Kentucky, 789 S. Limestone, Lexington, KY 40536, USA. svanlanen@uky.edu.
authors.forename: Anwesha
authors.initials: A
authors.lastname: Goswami
authors.forename: Steven G
authors.initials: SG
authors.lastname: Van Lanen
mesh_terms: D000255:Adenosine Triphosphate / Q000378:metabolism; D000577:Amides / Q000737:chemistry* / Q000378:metabolism*; D000595:Amino Acid Sequence; D055162:Biocatalysis; D004798:Enzymes / Q000737:chemistry / Q000378:metabolism*; D008969:Molecular Sequence Data; D014176:Protein Biosynthesis; D012270:Ribosomes / Q000378:metabolism*
chemical_list: D000577:Amides; D004798:Enzymes; D000255:Adenosine Triphosphate