title: Integration of multiscale dendritic spine structure and function data into systems biology models.
abstract: Comprising 10(11) neurons with 10(14) synaptic connections the human brain is the ultimate systems biology puzzle. An increasing body of evidence highlights the observation that changes in brain function, both normal and pathological, consistently correlate with dynamic changes in neuronal anatomy. Anatomical changes occur on a full range of scales from the trafficking of individual proteins, to alterations in synaptic morphology both individually and on a systems level, to reductions in long distance connectivity and brain volume. The major sites of contact for synapsing neurons are dendritic spines, which provide an excellent metric for the number and strength of signaling connections between elements of functional neuronal circuits. A comprehensive model of anatomical changes and their functional consequences would be a holy grail for the field of systems neuroscience but its realization appears far on the horizon. Various imaging technologies have advanced to allow for multi-scale visualization of brain plasticity and pathology, but computational analysis of the big data sets involved forms the bottleneck toward the creation of multiscale models of brain structure and function. While a full accounting of techniques and progress toward a comprehensive model of brain anatomy and function is beyond the scope of this or any other single paper, this review serves to highlight the opportunities for analysis of neuronal spine anatomy and function provided by new imaging technologies and the high-throughput application of older technologies while surveying the strengths and weaknesses of currently available computational analytical tools and room for future improvement.
authors.affiliation: Department of Systems Medicine and Bioengineering, Houston Methodist Research Institute Houston, TX, USA ; TT and WF Chao Center for Bioinformatics Research and Imaging for Neurosciences, Houston Methodist Research Institute Houston, TX, USA.
authors.forename: James J
authors.initials: JJ
authors.lastname: Mancuso
authors.affiliation: Department of Systems Medicine and Bioengineering, Houston Methodist Research Institute Houston, TX, USA ; TT and WF Chao Center for Bioinformatics Research and Imaging for Neurosciences, Houston Methodist Research Institute Houston, TX, USA.
authors.forename: Jie
authors.initials: J
authors.lastname: Cheng
authors.affiliation: Department of Systems Medicine and Bioengineering, Houston Methodist Research Institute Houston, TX, USA ; TT and WF Chao Center for Bioinformatics Research and Imaging for Neurosciences, Houston Methodist Research Institute Houston, TX, USA.
authors.forename: Zheng
authors.initials: Z
authors.lastname: Yin
authors.affiliation: Department of Systems Medicine and Bioengineering, Houston Methodist Research Institute Houston, TX, USA ; TT and WF Chao Center for Bioinformatics Research and Imaging for Neurosciences, Houston Methodist Research Institute Houston, TX, USA.
authors.forename: Jared C
authors.initials: JC
authors.lastname: Gilliam
authors.affiliation: Department of Systems Medicine and Bioengineering, Houston Methodist Research Institute Houston, TX, USA ; TT and WF Chao Center for Bioinformatics Research and Imaging for Neurosciences, Houston Methodist Research Institute Houston, TX, USA.
authors.forename: Xiaofeng
authors.initials: X
authors.lastname: Xia
authors.affiliation: Department of Systems Medicine and Bioengineering, Houston Methodist Research Institute Houston, TX, USA ; TT and WF Chao Center for Bioinformatics Research and Imaging for Neurosciences, Houston Methodist Research Institute Houston, TX, USA.
authors.forename: Xuping
authors.initials: X
authors.lastname: Li
authors.affiliation: Department of Systems Medicine and Bioengineering, Houston Methodist Research Institute Houston, TX, USA ; TT and WF Chao Center for Bioinformatics Research and Imaging for Neurosciences, Houston Methodist Research Institute Houston, TX, USA.
authors.forename: Stephen T C
authors.initials: ST
authors.lastname: Wong
keywords: big data; dendritic spines; image analysis; microscopy; modeling and simulations; systems biology