title: Piecewise linear and Boolean models of chemical reaction networks.
abstract: Models of biochemical networks are frequently complex and high-dimensional. Reduction methods that preserve important dynamical properties are therefore essential for their study. Interactions in biochemical networks are frequently modeled using Hill functions ([Formula: see text]). Reduced ODEs and Boolean approximations of such model networks have been studied extensively when the exponent [Formula: see text] is large. However, while the case of small constant [Formula: see text] appears in practice, it is not well understood. We provide a mathematical analysis of this limit and show that a reduction to a set of piecewise linear ODEs and Boolean networks can be mathematically justified. The piecewise linear systems have closed-form solutions that closely track those of the fully nonlinear model. The simpler, Boolean network can be used to study the qualitative behavior of the original system. We justify the reduction using geometric singular perturbation theory and compact convergence, and illustrate the results in network models of a toggle switch and an oscillator.
authors.affiliation: Department of Mathematics, University of Houston, Houston, TX, 77204-3008, USA, alanavc@math.uh.edu.
authors.forename: Alan
authors.initials: A
authors.lastname: Veliz-Cuba
authors.forename: Ajit
authors.initials: A
authors.lastname: Kumar
authors.forename: Krešimir
authors.initials: K
authors.lastname: Josić
mesh_terms: D007700:Kinetics; D016014:Linear Models; D055641:Mathematical Concepts; D053858:Metabolic Networks and Pathways; D008954:Models, Biological; D008956:Models, Chemical; D017711:Nonlinear Dynamics