title: Development of a reverse transcription loop-mediated isothermal amplification (RT-LAMP) assay for the detection of Sugarcane mosaic virus and Sorghum mosaic virus in sugarcane.
abstract: A reverse transcription loop-mediated isothermal amplification (RT-LAMP) assay was developed for detecting Sugarcane mosaic virus (SCMV) and Sorghum mosaic virus (SrMV) in sugarcane. Six sets of four primers corresponding to the conserved coat protein gene were designed and tested for each virus. Three primer sets designed for detecting SCMV and four for detecting SrMV were successful in the RT-LAMP assay. The effective primer sets were not only specific for their target virus, but also able to detect multiple virus strains. The magnesium sulfate concentration of the reaction solution was optimized, with both viruses requiring a minimum of 5mM for detection. The sensitivity of this RT-LAMP assay was less than that of conventional and real-time RT-PCR.
authors.affiliation: USDA, ARS, Sugarcane Research Unit, Houma, LA 70360, United States. Electronic address: amber.keizerweerd@ars.usda.gov.
authors.forename: Amber T
authors.initials: AT
authors.lastname: Keizerweerd
authors.affiliation: USDA, ARS, Sugarcane Research Unit, Houma, LA 70360, United States; Indian Institute of Sugarcane Research, Lucknow 226002, India.
authors.forename: Amaresh
authors.initials: A
authors.lastname: Chandra
authors.affiliation: USDA, ARS, Sugarcane Research Unit, Houma, LA 70360, United States.
authors.forename: Michael P
authors.initials: MP
authors.lastname: Grisham
mesh_terms: D017931:DNA Primers / Q000235:genetics; D021141:Nucleic Acid Amplification Techniques / Q000379:methods*; D017800:Potyvirus / Q000235:genetics / Q000302:isolation & purification*; D048348:Reverse Transcription; D031786:Saccharum / Q000821:virology*; D012680:Sensitivity and Specificity; D013696:Temperature
chemical_list: D017931:DNA Primers
keywords: RT-LAMP; RT-PCR; Sensitivity; Sorghum mosaic virus; Sugarcane mosaic virus