title: Integrative analysis of T cell motility from multi-channel microscopy data using TIAM.
abstract: Integrative analytical approaches are needed to study and understand T cell motility as it is a highly coordinated and complex process. Several computational algorithms and tools are available to track motile cells in time-lapse microscopy images. In contrast, there has only been limited effort towards the development of tools that take advantage of multi-channel microscopy data and facilitate integrative analysis of cell-motility. We have implemented algorithms for detecting, tracking, and analyzing cell motility from multi-channel time-lapse microscopy data. We have integrated these into a MATLAB-based toolset we call TIAM (Tool for Integrative Analysis of Motility). The cells are detected by a hybrid approach involving edge detection and Hough transforms from transmitted light images. Cells are tracked using a modified nearest-neighbor association followed by an optimization routine to join shorter segments. Cell positions are used to perform local segmentation for extracting features from transmitted light, reflection and fluorescence channels and associating them with cells and cell-tracks to facilitate integrative analysis. We found that TIAM accurately captures the motility behavior of T cells and performed better than DYNAMIK, Icy, Imaris, and Volocity in detecting and tracking motile T cells. Extraction of cell-associated features from reflection and fluorescence channels was also accurate with less than 10% median error in measurements. Finally, we obtained novel insights into T cell motility that were critically dependent on the unique capabilities of TIAM. We found that 1) the CD45RO subset of human CD8 T cells moved faster and exhibited an increased propensity to attach to the substratum during CCL21-driven chemokinesis when compared to the CD45RA subset; and 2) attachment area and arrest coefficient during antigen-induced motility of the CD45A subset is correlated with surface density of integrin LFA1 at the contact.
authors.affiliation: Skirball Institute of Biomolecular Medicine, NYU Medical Center, 540 First Avenue, New York, NY 10016, USA.
authors.forename: Viveka
authors.initials: V
authors.lastname: Mayya
authors.affiliation: Department of Applied Physics and Applied Mathematics, Columbia University, 200 S.W. Mudd Building, 500 W. 120th St., New York, NY 10027, USA.
authors.forename: Willie
authors.initials: W
authors.lastname: Neiswanger
authors.affiliation: Department of Applied Physics and Applied Mathematics, Columbia University, 200 S.W. Mudd Building, 500 W. 120th St., New York, NY 10027, USA.
authors.forename: Ricardo
authors.initials: R
authors.lastname: Medina
authors.affiliation: Department of Applied Physics and Applied Mathematics, Columbia University, 200 S.W. Mudd Building, 500 W. 120th St., New York, NY 10027, USA.
authors.forename: Chris H
authors.initials: CH
authors.lastname: Wiggins
authors.affiliation: Skirball Institute of Biomolecular Medicine, NYU Medical Center, 540 First Avenue, New York, NY 10016, USA; Kennedy Institute of Rheumatology, University of Oxford, Roosevelt Drive, Headington, Oxford OX3 7FY, UK. Electronic address: michael.dustin@kennedy.ox.ac.uk.
authors.forename: Michael L
authors.initials: ML
authors.lastname: Dustin
mesh_terms: D000465:Algorithms; D018414:CD8-Positive T-Lymphocytes / Q000276:immunology / Q000502:physiology*; D002465:Cell Movement / Q000276:immunology / Q000502:physiology*; D054421:Chemokine CCL21 / Q000276:immunology; D006801:Humans; D007091:Image Processing, Computer-Assisted / Q000379:methods; D021621:Imaging, Three-Dimensional / Q000379:methods / Q000401:mortality; D017493:Leukocyte Common Antigens / Q000276:immunology; D018613:Microscopy, Confocal / Q000379:methods*; D012984:Software
chemical_list: D054421:Chemokine CCL21; D017493:Leukocyte Common Antigens
keywords: Integrative analysis; Multi-channel microscopy; T cell motility; Tracking