title: N-linked (N-) glycoproteomics of urinary exosomes. [Corrected].
abstract: Epithelial cells lining the urinary tract secrete urinary exosomes (40-100 nm) that can be targeted to specific cells modulating their functionality. One potential targeting mechanism is adhesion between vesicle surface glycoproteins and target cells. This makes the glycopeptide analysis of exosomes important. Exosomes reflect the physiological state of the parent cells; therefore, they are a good source of biomarkers for urological and other diseases. Moreover, the urine collection is easy and noninvasive and urinary exosomes give information about renal and systemic organ systems. Accordingly, multiple studies on proteomic characterization of urinary exosomes in health and disease have been published. However, no systematic analysis of their glycoproteomic profile has been carried out to date, whereas a conserved glycan signature has been found for exosomes from urine and other sources including T cell lines and human milk. Here, we have enriched and identified the N-glycopeptides from these vesicles. These enriched N-glycopeptides were solved for their peptide sequence, glycan composition, structure, and glycosylation site using collision-induced dissociation MS/MS (CID-tandem MS) data interpreted by a publicly available software GlycopeptideId. Released glycans from the same sample was also analyzed with MALDI-MS. We have identified the N-glycoproteome of urinary exosomes. In total 126 N-glycopeptides from 51 N-glycosylation sites belonging to 37 glycoproteins were found in our results. The peptide sequences of these N-glycopeptides were identified unambiguously and their glycan composition (for 125 N-glycopeptides) and structures (for 87 N-glycopeptides) were proposed. A corresponding glycomic analysis with released N-glycans was also performed. We identified 66 unique nonmodified N-glycan compositions and in addition 13 sulfated/phosphorylated glycans were also found. This is the first systematic analysis of N-glycoproteome of urinary exosomes.
authors.affiliation: From the ‡Transplantation Laboratory, Haartman Institute, PO Box 21, Haartmaninkatu 3, FI-00014 University of Helsinki, Finland;
authors.forename: Mayank
authors.initials: M
authors.lastname: Saraswat
authors.affiliation: §HUSLAB, Helsinki University Central Hospital, Helsinki, Finland;
authors.forename: Sakari
authors.initials: S
authors.lastname: Joenväära
authors.affiliation: ¶Centre for Bioanalytical Sciences, Dublin City University, Glasnevin, Dublin 9, Ireland;
authors.forename: Luca
authors.initials: L
authors.lastname: Musante
authors.affiliation: ‖Applied Numerics Ltd, Nuottapolku 10 A 8, 00330 Helsinki, Finland.
authors.forename: Hannu
authors.initials: H
authors.lastname: Peltoniemi
authors.affiliation: ¶Centre for Bioanalytical Sciences, Dublin City University, Glasnevin, Dublin 9, Ireland;
authors.forename: Harry
authors.initials: H
authors.lastname: Holthofer
authors.affiliation: From the ‡Transplantation Laboratory, Haartman Institute, PO Box 21, Haartmaninkatu 3, FI-00014 University of Helsinki, Finland; §HUSLAB, Helsinki University Central Hospital, Helsinki, Finland; risto.renkonen@helsinki.fi.
authors.forename: Risto
authors.initials: R
authors.lastname: Renkonen
mesh_terms: D000328:Adult; D000595:Amino Acid Sequence; D055354:Exosomes / Q000378:metabolism*; D005260:Female; D063990:Gene Ontology; D054794:Glycomics / Q000379:methods*; D006020:Glycopeptides / Q000737:chemistry / Q000652:urine; D006023:Glycoproteins / Q000652:urine*; D006031:Glycosylation; D006801:Humans; D008297:Male; D008875:Middle Aged; D008969:Molecular Sequence Data; D011134:Polysaccharides / Q000737:chemistry; D040901:Proteomics / Q000379:methods*; D011956:Receptors, Cell Surface / Q000737:chemistry / Q000378:metabolism; D019032:Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization; D013347:Subcellular Fractions
chemical_list: D006020:Glycopeptides; D006023:Glycoproteins; D011134:Polysaccharides; D011956:Receptors, Cell Surface; C029486:intrinsic factor-cobalamin receptor