title: Automated counting of bacterial colonies by image analysis.
abstract: Research on microorganisms often involves culturing as a means to determine the survival and proliferation of bacteria. The number of colonies in a culture is counted to calculate the concentration of bacteria in the original broth; however, manual counting can be time-consuming and imprecise. To save time and prevent inconsistencies, this study proposes a fully automated counting system using image processing methods. To accurately estimate the number of viable bacteria in a known volume of suspension, colonies distributing over the whole surface area of a plate, including the central and rim areas of a Petri dish are taken into account. The performance of the proposed system is compared with verified manual counts, as well as with two freely available counting software programs. Comparisons show that the proposed system is an effective method with excellent accuracy with mean value of absolute percentage error of 3.37%. A user-friendly graphical user interface is also developed and freely available for download, providing researchers in biomedicine with a more convenient instrument for the enumeration of bacterial colonies.
authors.affiliation: Department of Mechanical Engineering, National Chung Cheng University, Chia-Yi, Taiwan; Advanced Institute of Manufacturing with High-Tech Innovations, National Chung Cheng University, Chia-Yi, Taiwan.
authors.forename: Pei-Ju
authors.initials: PJ
authors.lastname: Chiang
authors.affiliation: Department of Life Science, National Chung Cheng University, Chia-Yi, Taiwan.
authors.forename: Min-Jen
authors.initials: MJ
authors.lastname: Tseng
authors.affiliation: Department of Mechanical Engineering, National Chung Cheng University, Chia-Yi, Taiwan; Advanced Institute of Manufacturing with High-Tech Innovations, National Chung Cheng University, Chia-Yi, Taiwan.
authors.forename: Zong-Sian
authors.initials: ZS
authors.lastname: He
authors.affiliation: Department of Mechanical Engineering, National Chung Cheng University, Chia-Yi, Taiwan; Advanced Institute of Manufacturing with High-Tech Innovations, National Chung Cheng University, Chia-Yi, Taiwan.
authors.forename: Chia-Hsun
authors.initials: CH
authors.lastname: Li
mesh_terms: D001331:Automation / Q000379:methods*; D001419:Bacteria / Q000737:chemistry* / Q000254:growth & development*; D007091:Image Processing, Computer-Assisted / Q000379:methods*; D012984:Software
keywords: Automated colony counting; Image analysis; Petri dish