title: Improved image registration by sparse patch-based deformation estimation.
abstract: Despite intensive efforts for decades, deformable image registration is still a challenging problem due to the potential large anatomical differences across individual images, which limits the registration performance. Fortunately, this issue could be alleviated if a good initial deformation can be provided for the two images under registration, which are often termed as the moving subject and the fixed template, respectively. In this work, we present a novel patch-based initial deformation prediction framework for improving the performance of existing registration algorithms. Our main idea is to estimate the initial deformation between subject and template in a patch-wise fashion by using the sparse representation technique. We argue that two image patches should follow the same deformation toward the template image if their patch-wise appearance patterns are similar. To this end, our framework consists of two stages, i.e., the training stage and the application stage. In the training stage, we register all training images to the pre-selected template, such that the deformation of each training image with respect to the template is known. In the application stage, we apply the following four steps to efficiently calculate the initial deformation field for the new test subject: (1) We pick a small number of key points in the distinctive regions of the test subject; (2) for each key point, we extract a local patch and form a coupled appearance-deformation dictionary from training images where each dictionary atom consists of the image intensity patch as well as their respective local deformations; (3) a small set of training image patches in the coupled dictionary are selected to represent the image patch of each subject key point by sparse representation. Then, we can predict the initial deformation for each subject key point by propagating the pre-estimated deformations on the selected training patches with the same sparse representation coefficients; and (4) we employ thin-plate splines (TPS) to interpolate a dense initial deformation field by considering all key points as the control points. Thus, the conventional image registration problem becomes much easier in the sense that we only need to compute the remaining small deformation for completing the registration of the subject to the template. Experimental results on both simulated and real data show that the registration performance can be significantly improved after integrating our patch-based deformation prediction framework into the existing registration algorithms.
authors.affiliation: Department of Radiology and BRIC, University of North Carolina at Chapel Hill, NC 27599, USA. Electronic address: mjkim@med.unc.edu.
authors.forename: Minjeong
authors.initials: M
authors.lastname: Kim
authors.affiliation: Department of Radiology and BRIC, University of North Carolina at Chapel Hill, NC 27599, USA. Electronic address: grwu@med.unc.edu.
authors.forename: Guorong
authors.initials: G
authors.lastname: Wu
authors.affiliation: Med-X Research Institute, School of Biomedical Engineering, Shanghai Jiao Tong University, Shanghai 200030, China. Electronic address: wang.qian@sjtu.edu.cn.
authors.forename: Qian
authors.initials: Q
authors.lastname: Wang
authors.affiliation: Department of Brain and Cognitive Engineering, Korea University, Seoul, Republic of Korea. Electronic address: swlee@image.korea.ac.kr.
authors.forename: Seong-Whan
authors.initials: SW
authors.lastname: Lee
authors.affiliation: Department of Radiology and BRIC, University of North Carolina at Chapel Hill, NC 27599, USA; Department of Brain and Cognitive Engineering, Korea University, Seoul, Republic of Korea. Electronic address: dgshen@med.unc.edu.
authors.forename: Dinggang
authors.initials: D
authors.lastname: Shen
mesh_terms: D000465:Algorithms; D001921:Brain / Q000033:anatomy & histology*; D003198:Computer Simulation; D006801:Humans; D007090:Image Interpretation, Computer-Assisted / Q000379:methods*; D059906:Neuroimaging / Q000379:methods*
keywords: Deformable image registration; Initial deformation prediction; Sparse representation