title: Lignocellulose depolymerization occurs via an environmentally adapted metabolic cascades in the wood-rotting basidiomycete Phanerochaete chrysosporium.
abstract: Plant biomass can be utilized by a lignocellulose-degrading fungus, Phanerochaete chrysosporium, but the metabolic and regulatory mechanisms involved are not well understood. A polyomics-based analysis (metabolomics, proteomics, and transcriptomics) of P. chrysosporium has been carried out using statistically optimized conditions for lignocellulolytic reaction. Thirty-nine metabolites and 123 genes (14 encoded proteins) that consistently exhibited altered regulation patterns were identified. These factors were then integrated into a comprehensive map that fully depicts all signaling cascades involved in P. chrysosporium. Despite the diversity of these cascades, they showed complementary interconnection among themselves, ensuring the efficiency of passive biosystem and thereby yielding energy expenditure for the cells. Particularly, many factors related to intracellular regulatory networks showed compensating activity in homeostatic lignocellulolysis. In the main platform of proactive biosystem, although several deconstruction-related targets (e.g., glycoside hydrolase, ureidoglycolate hydrolase, transporters, and peroxidases) were systematically utilized, well-known supporters (e.g., cellobiose dehydrogenase and ferroxidase) were rarely generated.
authors.affiliation: Department of Chemical and Biomolecular Engineering, Advanced Biomass R&D Center, KAIST, 291 Daehak-ro, Yuseong-gu, Daejeon, 305-701, Republic of Korea.
authors.forename: Jin Seop
authors.initials: JS
authors.lastname: Bak
mesh_terms: D001673:Biodegradation, Environmental; D004734:Energy Metabolism; D005800:Genes, Fungal; D008031:Lignin / Q000378:metabolism*; D055442:Metabolome; D010545:Peroxides / Q000378:metabolism; D020075:Phanerochaete / Q000235:genetics / Q000378:metabolism*; D058105:Polymerization; D020543:Proteome; D015398:Signal Transduction; D059467:Transcriptome; D014934:Wood
chemical_list: D010545:Peroxides; D020543:Proteome; C036909:lignocellulose; D008031:Lignin
keywords: Bioconversion; Phanerochaete chrysosporium; biofuels; lignocellulose; metabolic networks; systems biology