title: Validating the scalability of soft X-ray spectromicroscopy for quantitative soil ecology and biogeochemistry research.
abstract: Synchrotron-based soft-X-ray scanning transmission X-ray microscopy (STXM) has the potential to provide nanoscale resolution of the associations among biological and geological materials. However, standard methods for how samples should be prepared, measured, and analyzed to allow the results from these nanoscale imaging and spectroscopic tools to be scaled to field scale biogeochemical results are not well established. We utilized a simple sample preparation technique that allows one to assess detailed mineral, metal, and microbe spectroscopic information at the nano- and microscale in soil colloids. We then evaluated three common approaches to collect and process nano- and micronscale information by STXM and the correspondence of these approaches to millimeter scale soil measurements. Finally, we assessed the reproducibility and spatial autocorrelation of nano- and micronscale protein, Fe(II) and Fe(III) densities in a soil sample. We demonstrate that linear combination fitting of entire spectra provides slightly different Fe(II) mineral densities compared to image resonance difference mapping but that difference mapping results are highly reproducible between among sample replicates. Further, STXM results scale to the mm scale in complex systems with an approximate geospatial range of 3 μm in these samples.
authors.forename: James J
authors.initials: JJ
authors.lastname: Dynes
authors.forename: Tom Z
authors.initials: TZ
authors.lastname: Regier
authors.forename: Ian
authors.initials: I
authors.lastname: Snape
authors.forename: Steven D
authors.initials: SD
authors.lastname: Siciliano
authors.forename: Derek
authors.initials: D
authors.lastname: Peak
mesh_terms: D003102:Colloids; D004463:Ecology; D005290:Ferric Compounds / Q000737:chemistry; D005296:Ferrous Compounds / Q000737:chemistry; D007501:Iron / Q000737:chemistry; D008670:Metals; D008853:Microscopy / Q000379:methods; D008903:Minerals / Q000737:chemistry; D015203:Reproducibility of Results; D012987:Soil / Q000737:chemistry*; D013052:Spectrometry, X-Ray Emission / Q000379:methods*
chemical_list: D003102:Colloids; D005290:Ferric Compounds; D005296:Ferrous Compounds; D008670:Metals; D008903:Minerals; D012987:Soil; D007501:Iron