title: High-resolution melting of 12S rRNA and cytochrome b DNA sequences for discrimination of species within distinct European animal families.
abstract: The cheap and easy identification of species is necessary within multiple fields of molecular biology. The use of high-resolution melting (HRM) of DNA provides a fast closed-tube method for analysis of the sequence composition of the mitochondrial genes 12S rRNA and cytochrome b. We investigated the potential use of HRM for species identification within eleven different animal groups commonly found in Europe by animal-group-specific DNA amplification followed by DNA melting. Influence factors as DNA amount, additional single base alterations, and the existence of mixed samples were taken into consideration. Visual inspection combined with mathematical evaluation of the curve shapes did resolve nearly all species within an animal group. The assay can therefore not only be used for identification of animal groups and mixture analysis but also for species identification within the respective groups. The use of a universal 12S rRNA system additionally revealed a possible approach for species discrimination, mostly by exclusion. The use of the HRM assay showed to be a reliable, fast, and cheap method for species discrimination within a broad range of different animal species and can be used in a flexible "modular" manner depending on the question to be solved.
authors.affiliation: Institute of Legal Medicine, Freiburg University Medical Center, Albertstrasse 9, D-79104 Freiburg, Germany; Faculty of Biology, University of Freiburg, Schaenzlestrasse 1, D-79104 Freiburg, Germany.
authors.forename: Jana
authors.initials: J
authors.lastname: Naue
authors.affiliation: Institute of Legal Medicine, Freiburg University Medical Center, Albertstrasse 9, D-79104 Freiburg, Germany.
authors.forename: Tobias
authors.initials: T
authors.lastname: Hansmann
authors.affiliation: Institute of Legal Medicine, Freiburg University Medical Center, Albertstrasse 9, D-79104 Freiburg, Germany.
authors.forename: Ulrike
authors.initials: U
authors.lastname: Schmidt
mesh_terms: D000818:Animals; D002645:Chickens; D045303:Cytochromes b / Q000235:genetics*; D004247:DNA / Q000032:analysis* / Q000235:genetics*; D004272:DNA, Mitochondrial / Q000235:genetics; D018397:Equidae; D005060:Europe; D050259:Genes, Mitochondrial; D006801:Humans; D009691:Nucleic Acid Denaturation; D016133:Polymerase Chain Reaction; D012335:RNA, Ribosomal / Q000235:genetics*; D017422:Sequence Analysis, DNA / Q000379:methods*; D013045:Species Specificity
chemical_list: D004272:DNA, Mitochondrial; D012335:RNA, Ribosomal; C075526:RNA, ribosomal, 12S; D004247:DNA; D045303:Cytochromes b