title: Kinetics of thermal activation of an ultraviolet cone pigment.
abstract: Visual pigments can be thermally activated via isomerization of the retinyl chromophore and hydrolysis of the Schiff base (SB) through which the retinyl chromophore is bound to the opsin protein. Here, we present the first combined experimental and theoretical study of the thermal activation of a Siberian hamster ultraviolet (SHUV) pigment. We measured the rates of thermal isomerization and hydrolysis in the SHUV pigment and bovine rhodopsin. We found that these rates were significantly faster in the UV pigment than in rhodopsin due to the difference in the structural and electrostatic effects surrounding the unprotonated Schiff base (USB) retinyl chromophore in the UV pigment. Theoretical (DFT-QM/MM) calculations of the cis-trans thermal isomerization revealed a barrier of ∼23 kcal/mol for the USB retinyl chromophore in SHUV compared to ∼40 kcal/mol for protonated Schiff base (PSB) chromophore in rhodopsin. The lower barrier for thermal isomerization in the SHUV pigment is attributed to the (i) lessening of the steric restraints near the β-ionone ring and SB ends of the chromophore, (ii) displacement of the transmembrane helix 6 (TM6) away from the binding pocket toward TM5 due to absence of the salt bridge between the USB and the protonated E113 residue, and (iii) change in orientation of the hydrogen-bonding networks (HBNs) in the extracellular loop 2 (EII). The results in comparing thermal stability of UV cone pigment and rhodopsin provide insight into molecular evolution of vertebrate visual pigments in achieving low discrete dark noise and high photosensitivity in rod pigments for dim-light vision.
authors.affiliation: Department of Chemistry, Yale University , New Haven, Connecticut 06520 United States.
authors.forename: Victoria
authors.initials: V
authors.lastname: Mooney
authors.forename: Sivakumar
authors.initials: S
authors.lastname: Sekharan
authors.forename: Jian
authors.initials: J
authors.lastname: Liu
authors.forename: Ying
authors.initials: Y
authors.lastname: Guo
authors.forename: Victor S
authors.initials: VS
authors.lastname: Batista
authors.forename: Elsa C Y
authors.initials: EC
authors.lastname: Yan
mesh_terms: D000818:Animals; D006224:Cricetinae; D057809:HEK293 Cells; D006801:Humans; D006860:Hydrogen Bonding; D007700:Kinetics; D008958:Models, Molecular; D015394:Molecular Structure; D017111:Phodopus; D011789:Quantum Theory; D012243:Rhodopsin / Q000737:chemistry*; D012545:Schiff Bases / Q000737:chemistry; D055672:Static Electricity; D013696:Temperature; D014466:Ultraviolet Rays
chemical_list: D012545:Schiff Bases; D012243:Rhodopsin