title: Carbohydrate force fields.
abstract: Carbohydrates present a special set of challenges to the generation of force fields. First, the tertiary structures of monosaccharides are complex merely by virtue of their exceptionally high number of chiral centers. In addition, their electronic characteristics lead to molecular geometries and electrostatic landscapes that can be challenging to predict and model. The monosaccharide units can also interconnect in many ways, resulting in a large number of possible oligosaccharides and polysaccharides, both linear and branched. These larger structures contain a number of rotatable bonds, meaning they potentially sample an enormous conformational space. This article briefly reviews the history of carbohydrate force fields, examining and comparing their challenges, forms, philosophies, and development strategies. Then it presents a survey of recent uses of these force fields, noting trends, strengths, deficiencies, and possible directions for future expansion.
authors.affiliation: Complex Carbohydrate Research Center, University of Georgia, Athens, GA, USA.
authors.forename: B Lachele
authors.initials: BL
authors.lastname: Foley
authors.affiliation: Complex Carbohydrate Research Center, University of Georgia, Athens, GA, USA.
authors.forename: Matthew B
authors.initials: MB
authors.lastname: Tessier
authors.affiliation: Complex Carbohydrate Research Center, University of Georgia, Athens, GA, USA ; School of Chemistry, National University of Ireland, Galway, Ireland.
authors.forename: Robert J
authors.initials: RJ
authors.lastname: Woods