title: A synthetic phylogeny of freshwater crayfish: insights for conservation.
abstract: Phylogenetic systematics is heading for a renaissance where we shift from considering our phylogenetic estimates as a static image in a published paper and taxonomies as a hardcopy checklist to treating both the phylogenetic estimate and dynamic taxonomies as metadata for further analyses. The Open Tree of Life project (opentreeoflife.org) is developing synthesis tools for harnessing the power of phylogenetic inference and robust taxonomy to develop a synthetic tree of life. We capitalize on this approach to estimate a synthesis tree for the freshwater crayfish. The crayfish make an exceptional group to demonstrate the utility of the synthesis approach, as there recently have been a number of phylogenetic studies on the crayfishes along with a robust underlying taxonomic framework. Importantly, the crayfish have also been extensively assessed by an IUCN Red List team and therefore have accurate and up-to-date area and conservation status data available for analysis within a phylogenetic context. Here, we develop a synthesis phylogeny for the world's freshwater crayfish and examine the phylogenetic distribution of threat. We also estimate a molecular phylogeny based on all available GenBank crayfish sequences and use this tree to estimate divergence times and test for divergence rate variation. Finally, we conduct EDGE and HEDGE analyses and identify a number of species of freshwater crayfish of highest priority in conservation efforts.
authors.affiliation: Computational Biology Institute, George Washington University, Ashburn, VA 20132, USA.
authors.forename: Christopher L
authors.initials: CL
authors.lastname: Owen
authors.affiliation: Department of Biological Sciences, Florida International University, Biscayne Bay Campus, North Miami, FL 33181, USA.
authors.forename: Heather
authors.initials: H
authors.lastname: Bracken-Grissom
authors.affiliation: Computational Biology Institute, George Washington University, Ashburn, VA 20132, USA.
authors.forename: David
authors.initials: D
authors.lastname: Stern
authors.affiliation: Computational Biology Institute, George Washington University, Ashburn, VA 20132, USA Department of Invertebrate Zoology, National Museum of Natural History, Smithsonian Institution, Washington, DC 20013, USA kcrandall@gwu.edu.
authors.forename: Keith A
authors.initials: KA
authors.lastname: Crandall
mesh_terms: D000818:Animals; D003400:Astacoidea / Q000235:genetics*; D001483:Base Sequence; D002965:Classification / Q000379:methods*; D003247:Conservation of Natural Resources / Q000379:methods*; D005618:Fresh Water; D008957:Models, Genetic; D008969:Molecular Sequence Data; D010802:Phylogeny; D017422:Sequence Analysis, DNA; D013045:Species Specificity; D013997:Time Factors
keywords: EDGE; conservation; crayfish; phylogenetic diversity