title: Missing checkerboards? An absence of competitive signal in Alnus-associated ectomycorrhizal fungal communities.
abstract: A number of recent studies suggest that interspecific competition plays a key role in determining the structure of ectomycorrhizal (ECM) fungal communities. Despite this growing consensus, there has been limited study of ECM fungal community dynamics in abiotically stressful environments, which are often dominated by positive rather than antagonistic interactions. In this study, we examined the ECM fungal communities associated with the host genus Alnus, which live in soils high in both nitrate and acidity. The nature of ECM fungal species interactions (i.e., antagonistic, neutral, or positive) was assessed using taxon co-occurrence and DNA sequence abundance correlational analyses. ECM fungal communities were sampled from root tips or mesh in-growth bags in three monodominant A. rubra plots at a site in Oregon, USA and identified using Illumina-based amplification of the ITS1 gene region. We found a total of 175 ECM fungal taxa; 16 of which were closely related to known Alnus-associated ECM fungi. Contrary to previous studies of ECM fungal communities, taxon co-occurrence analyses on both the total and Alnus-associated ECM datasets indicated that the ECM fungal communities in this system were not structured by interspecific competition. Instead, the co-occurrence patterns were consistent with either random assembly or significant positive interactions. Pair-wise correlational analyses were also more consistent with neutral or positive interactions. Taken together, our results suggest that interspecific competition does not appear to determine the structure of all ECM fungal communities and that abiotic conditions may be important in determining the specific type of interaction occurring among ECM fungi.
authors.affiliation: Department of Plant Biology, University of Minnesota , St. Paul, MN , USA ; Department of Biology, Lewis & Clark College , Portland, OR , USA.
authors.forename: Peter
authors.initials: P
authors.lastname: Kennedy
authors.affiliation: Department of Plant Biology, University of Minnesota , St. Paul, MN , USA.
authors.forename: Nhu
authors.initials: N
authors.lastname: Nguyen
authors.affiliation: Department of Biology, Lewis & Clark College , Portland, OR , USA.
authors.forename: Hannah
authors.initials: H
authors.lastname: Cohen
authors.affiliation: Department of Biology, Stanford University , Palo Alto, CA , USA.
authors.forename: Kabir
authors.initials: K
authors.lastname: Peay
keywords: Checkerboard analysis; Co-occurrence patterns; Fungi; Interspecific competition; Next-generation sequencing; Species interactions