title: Population identification of Sarcoptes hominis and Sarcoptes canis in China using DNA sequences.
abstract: There has been no consistent conclusion on whether Sarcoptes mites parasitizing in humans and animals are the same species. To identify Sarcoptes (S.) hominis and S. canis in China, gDNA was extracted from individual mites (five from patients with scabies and five from dogs with mange) for amplification of rDNA ITS2, mtDNA 16S, and cox1 fragment sequences. Then, the sequences obtained were aligned with those from different hosts and geographical locations retrieved from GenBank and sequence analyses were conducted. Phylogenetic trees based on 317-bp mtDNA cox1 showed five distinctive branches (species) of Sarcoptes mites, four for S. hominis (S. hominis Chinese, S. nr. hominis Chinese, S. hominis Australian, and S. hominis Panamanian) and one for S. animal (S. animal). S. animal included mites from nine animal species, with S. canis China, S. canis Australia, and S. canis USA clustering as a subbranch. Further sequence divergence analysis revealed no overlap between intraspecific (≤ 2.6 %) and interspecific (2.6-10.5 %) divergences in 317-bp mtDNA cox1. However, overlap was detected between intra- and interspecific divergences in 311-bp rDNA ITS2 or 275-bp mtDNA 16S when the divergences exceeded 1.0 %, which resulted in failure in identification of Sarcoptes. The results showed that the 317-bp mtDNA cox1 could be used as a DNA barcode for molecular identification of Sarcoptes mites. In addition, geographical isolation was observed between S. hominis Chinese, S. hominis Australian, and S. hominis Panamanian, but not between all S. canis. S. canis and the other S. animal belonged to the same species.
authors.affiliation: Department of Immunology and Pathogen Biology, Xi'an Jiaotong University Health Science Center, No.76 Yanta West Road, Xi'an, China, 710061, zhaoyae@mail.xjtu.edu.cn.
authors.forename: YaE
authors.initials: Y
authors.lastname: Zhao
authors.forename: ZhiGuo
authors.initials: Z
authors.lastname: Cao
authors.forename: Juan
authors.initials: J
authors.lastname: Cheng
authors.forename: Li
authors.initials: L
authors.lastname: Hu
authors.forename: JunXian
authors.initials: J
authors.lastname: Ma
authors.forename: YuanJun
authors.initials: Y
authors.lastname: Yang
authors.forename: XiaoPeng
authors.initials: X
authors.lastname: Wang
authors.forename: JiHui
authors.initials: J
authors.lastname: Zeng
authors.forename: TianPing
authors.initials: T
authors.lastname: Wang
mesh_terms: D063147:Animal Distribution; D000818:Animals; D001315:Australia; D002681:China; D051545:Cyclooxygenase 1 / Q000235:genetics; D004272:DNA, Mitochondrial / Q000235:genetics*; D004275:DNA, Ribosomal / Q000235:genetics*; D006801:Humans; D010802:Phylogeny; D040021:Sarcoptidae / Q000145:classification* / Q000235:genetics*; D014481:United States
chemical_list: D004272:DNA, Mitochondrial; D004275:DNA, Ribosomal; D051545:Cyclooxygenase 1