title: Mechanistic investigations of the hydrolysis of amides, oxoesters and thioesters via kinetic isotope effects and positional isotope exchange.
abstract: The hydrolysis of amides, oxoesters and thioesters is an important reaction in both organic chemistry and biochemistry. Kinetic isotope effects (KIEs) are one of the most important physical organic methods for determining the most likely transition state structure and rate-determining step of these reaction mechanisms. This method induces a very small change in reaction rates, which, in turn, results in a minimum disturbance of the natural mechanism. KIE studies were carried out on both the non-enzymatic and the enzyme-catalyzed reactions in an effort to compare both types of mechanisms. In these studies the amides and esters of formic acid were chosen because this molecular structure allowed development of methodology to determine heavy-atom solvent (nucleophile) KIEs. This type of isotope effect is difficult to measure, but is rich in mechanistic information. Results of these investigations point to transition states with varying degrees of tetrahedral character that fit a classical stepwise mechanism. This article is part of a special issue entitled: Enzyme Transition States from Theory and Experiment.
authors.affiliation: Department of Biochemistry, University of Washington-Bothell, Bothell, WA 98011, USA.
authors.forename: Lori I
authors.initials: LI
authors.lastname: Robins
authors.affiliation: Department of Chemistry and Biochemistry, California Polytechnic State University, San Luis Obispo, CA 93407, USA.
authors.forename: Emily J
authors.initials: EJ
authors.lastname: Fogle
authors.affiliation: Department of Chemistry and Biochemistry, California Polytechnic State University, San Luis Obispo, CA 93407, USA. Electronic address: jmarlier@calpoly.edu.
authors.forename: John F
authors.initials: JF
authors.lastname: Marlier
mesh_terms: D000577:Amides / Q000737:chemistry* / Q000378:metabolism; D055162:Biocatalysis; D004798:Enzymes / Q000737:chemistry* / Q000378:metabolism; D004952:Esters / Q000737:chemistry* / Q000378:metabolism; D006863:Hydrogen-Ion Concentration; D006868:Hydrolysis; D007700:Kinetics; D008956:Models, Chemical; D015394:Molecular Structure; D010103:Oxygen Isotopes / Q000737:chemistry
chemical_list: D000577:Amides; D004798:Enzymes; D004952:Esters; D010103:Oxygen Isotopes
keywords: Amide hydrolysis mechanisms; Kinetic isotope effects; Oxoester hydrolysis mechanisms; Positional isotope exchange; Thioester hydrolysis mechanisms