title: ENViz: a Cytoscape App for integrated statistical analysis and visualization of sample-matched data with multiple data types.
abstract: ENViz (Enrichment Analysis and Visualization) is a Cytoscape app that performs joint enrichment analysis of two types of sample matched datasets in the context of systematic annotations. Such datasets may be gene expression or any other high-throughput data collected in the same set of samples. The enrichment analysis is done in the context of pathway information, gene ontology or any custom annotation of the data. The results of the analysis consist of significant associations between profiled elements of one of the datasets to the annotation terms (e.g. miR-19 was associated to the cell-cycle process in breast cancer samples). The results of the enrichment analysis are visualized as an interactive Cytoscape network.
authors.affiliation: Agilent Laboratories, Tel-Aviv, Israel, Technion - Israel Institute of Technology, Haifa, Israel, Blue Oak Software and Agilent Laboratories, Santa Clara, CA, USA Agilent Laboratories, Tel-Aviv, Israel, Technion - Israel Institute of Technology, Haifa, Israel, Blue Oak Software and Agilent Laboratories, Santa Clara, CA, USA.
authors.forename: Israel
authors.initials: I
authors.lastname: Steinfeld
authors.affiliation: Agilent Laboratories, Tel-Aviv, Israel, Technion - Israel Institute of Technology, Haifa, Israel, Blue Oak Software and Agilent Laboratories, Santa Clara, CA, USA.
authors.forename: Roy
authors.initials: R
authors.lastname: Navon
authors.affiliation: Agilent Laboratories, Tel-Aviv, Israel, Technion - Israel Institute of Technology, Haifa, Israel, Blue Oak Software and Agilent Laboratories, Santa Clara, CA, USA.
authors.forename: Michael L
authors.initials: ML
authors.lastname: Creech
authors.affiliation: Agilent Laboratories, Tel-Aviv, Israel, Technion - Israel Institute of Technology, Haifa, Israel, Blue Oak Software and Agilent Laboratories, Santa Clara, CA, USA Agilent Laboratories, Tel-Aviv, Israel, Technion - Israel Institute of Technology, Haifa, Israel, Blue Oak Software and Agilent Laboratories, Santa Clara, CA, USA.
authors.forename: Zohar
authors.initials: Z
authors.lastname: Yakhini
authors.affiliation: Agilent Laboratories, Tel-Aviv, Israel, Technion - Israel Institute of Technology, Haifa, Israel, Blue Oak Software and Agilent Laboratories, Santa Clara, CA, USA.
authors.forename: Anya
authors.initials: A
authors.lastname: Tsalenko
mesh_terms: D001943:Breast Neoplasms / Q000235:genetics; D002453:Cell Cycle; D003196:Computer Graphics; D003627:Data Interpretation, Statistical; D005260:Female; D020869:Gene Expression Profiling / Q000379:methods*; D006801:Humans; D012984:Software