title: Measures of exposure impact genetic association studies: an example in vitamin K levels and VKORC1.
abstract: Studies assessing the impact of gene-environment interactions on common human diseases and traits have been relatively few for many reasons. One often acknowledged reason is that it is difficult to accurately measure the environment or exposure. Indeed, most large-scale epidemiologic studies use questionnaires to assess and measure past and current exposure levels. While questionnaires may be cost-effective, the data may or may not accurately represent the exposure compared with more direct measurements (e.g., self-reported current smoking status versus direct measurement for cotinine levels). Much like phenotyping, the choice in how an exposure is measured may impact downstream tests of genetic association and gene-environment interaction studies. As a case study, we performed tests of association between five common VKORC1 SNPs and two different measurements of vitamin K levels, dietary (n=5,725) and serum (n=348), in the Third National Health and Nutrition Examination Studies (NHANES III). We did not replicate previously reported associations between VKORC1 and vitamin K levels using either measure. Furthermore, the suggestive associations and estimated genetic effect sizes identified in this study differed depending on the vitamin K measurement. This case study of VKORC1 and vitamin K levels serves as a cautionary example of the downstream consequences that the type of exposure measurement choices will have on genetic association and possibly gene-environment studies.
authors.affiliation: Institute for Computational Biology, Department of Epidemiology and Biostatistics, Case Western Reserve University, Wolstein Research Building, 2103 Cornell Road, Suite 2527, Cleveland, OH 44106, USA. dana.crawford@case.edu.
authors.forename: Dana C
authors.initials: DC
authors.lastname: Crawford
authors.forename: Kristin
authors.initials: K
authors.lastname: Brown-Gentry
authors.forename: Mark J
authors.initials: MJ
authors.lastname: Rieder
mesh_terms: D000328:Adult; D000368:Aged; D019295:Computational Biology; D004032:Diet; D005260:Female; D059647:Gene-Environment Interaction; D056726:Genetic Association Studies / Q000706:statistics & numerical data; D006801:Humans; D008297:Male; D008875:Middle Aged; D009749:Nutrition Surveys; D020641:Polymorphism, Single Nucleotide; D014812:Vitamin K / Q000008:administration & dosage / Q000097:blood*; D064417:Vitamin K Epoxide Reductases / Q000235:genetics*
chemical_list: D014812:Vitamin K; C578523:VKORC1 protein, human; D064417:Vitamin K Epoxide Reductases