title: Comparison of normalization algorithms for cross-batch color segmentation of histopathological images.
abstract: Automated processing of digital histopathology slides has the potential to streamline patient care and provide new tools for cancer classification and grading. Before automatic analysis is possible, quality control procedures are applied to ensure that each image can be read consistently. One important quality control step is color normalization of the slide image, which adjusts for color variances (batch-effects) caused by differences in stain preparation and image acquisition equipment. Color batch-effects affect color-based features and reduce the performance of supervised color segmentation algorithms on images acquired separately. To identify an optimal normalization technique for histopathological color segmentation applications, five color normalization algorithms were compared in this study using 204 images from four image batches. Among the normalization methods, two global color normalization methods normalized colors from all stain simultaneously and three stain color normalization methods normalized colors from individual stains extracted using color deconvolution. Stain color normalization methods performed significantly better than global color normalization methods in 11 of 12 cross-batch experiments (p<;0.05). Specifically, the stain color normalization method using k-means clustering was found to be the best choice because of high stain segmentation accuracy and low computational complexity.
authors.forename: Ryan A
authors.initials: RA
authors.lastname: Hoffman
authors.forename: Sonal
authors.initials: S
authors.lastname: Kothari
authors.forename: May D
authors.initials: MD
authors.lastname: Wang
mesh_terms: D000465:Algorithms; D016000:Cluster Analysis; D003116:Color; D006801:Humans; D021621:Imaging, Three-Dimensional; D009369:Neoplasms / Q000473:pathology; D010336:Pathology / Q000379:methods*; D013194:Staining and Labeling