title: Persistence and breakdown of strand symmetry in the human genome.
abstract: Afreixo, V., Bastos, C.A.C., Garcia, S.P., Rodrigues, J.M.O.S., Pinho, A.J., Ferreira, P.J.S.G., 2013. The breakdown of the word symmetry in the human genome. J. Theor. Biol. 335, 153-159 analyzed the word symmetry (strand symmetry or the second parity rule) in the human genome. They concluded that strand symmetry holds for oligonucleotides up to 6 nt and is no longer statistically significant for oligonucleotides of higher orders. However, although they provided some new results for the issue, their interpretation would not be fully justified. Also, their conclusion needs to be further evaluated. Further analysis of their results, especially those of equivalence tests and word symmetry distance, shows that strand symmetry would persist for higher-order oligonucleotides up to 9 nt in the human genome, at least for its overall frequency framework (oligonucleotide frequency pattern).
authors.affiliation: Key Laboratory of Gene Engineering of Ministry of Education, and Biotechnology Research Center, Sun Yat-sen University, Guangzhou 510275, China. Electronic address: lsszsh@mail.sysu.edu.cn.
authors.forename: Shang-Hong
authors.initials: SH
authors.lastname: Zhang
mesh_terms: D002877:Chromosomes, Human / Q000235:genetics*; D015894:Genome, Human / Q000502:physiology*; D006801:Humans; D008957:Models, Genetic
keywords: Genomic sequence; Oligonucleotide frequency; The second parity rule