title: Conformational and connotational heterogeneity: a surprising relationship between protein structural flexibility and puns.
abstract: Protein structures are often thought of as static objects, and indeed, the bulk of a protein's sequence forms α-helices, β-sheets, and other generally well-ordered substructures. These portions of the molecule pre-pay the entropic price of maintaining a globally unique fold, freeing other regions to adopt multiple alternative conformations. In many cases, this localized flexibility is biologically interesting: it may be important for catalytic turnover or for conformational selection before forming an intermolecular complex, for example. Similarly, most of written language is carefully tuned to avoid ambiguity and convey a singular meaning, a cohesive message. This linguistic scaffolding in some sense pre-pays a rhetorical price, paving the way for punctuated instances in which a given word or phrase can simultaneously adopt multiple alternative connotations-in other words, for puns.
authors.affiliation: Department of Bioengineering and Therapeutic Sciences and California Institute for Quantitative Biology, University of California, San Francisco, San Francisco, CA, 94158, USA.
authors.forename: Daniel A
authors.initials: DA
authors.lastname: Keedy
mesh_terms: D019277:Entropy; D008958:Models, Molecular; D011487:Protein Conformation; D011506:Proteins / Q000737:chemistry* / Q000502:physiology
chemical_list: D011506:Proteins
keywords: evolution; language; protein dynamics; protein structure; rigidity