title: Towards an exact theory of linear absorbance and circular dichroism of pigment-protein complexes: importance of non-secular contributions.
abstract: A challenge for the theory of optical spectra of pigment-protein complexes is the equal strength of the pigment-pigment and the pigment-protein couplings. Treating both on an equal footing so far can only be managed by numerically costly approaches. Here, we exploit recent results on a normal mode analysis derived spectral density that revealed the dominance of the diagonal matrix elements of the exciton-vibrational coupling in the exciton state representation. We use a cumulant expansion technique that treats the diagonal parts exactly, includes an infinite summation of the off-diagonal parts in secular and Markov approximations, and provides a systematic perturbative way to include non-secular and non-Markov corrections. The theory is applied to a model dimer and to chlorophyll (Chl) a and Chl b homodimers of the reconstituted water-soluble chlorophyll-binding protein (WSCP) from cauliflower. The model calculations reveal that the non-secular/non-Markov effects redistribute oscillator strength from the strong to the weak exciton transition in absorbance and they diminish the rotational strength of the exciton transitions in circular dichroism. The magnitude of these corrections is in a few percent range of the overall signal, providing a quantitative explanation of the success of time-local convolution-less density matrix theory applied earlier. A close examination of the optical spectra of Chl a and Chl b homodimers in WSCP suggests that the opening angle between Qy transition dipole moments in Chl b homodimers is larger by about 9(∘) than for Chl a homodimers for which a crystal structure of a related WSCP complex exists. It remains to be investigated whether this change is due to a different mutual geometry of the pigments or due to the different electronic structures of Chl a and Chl b.
authors.affiliation: Institut für Theoretische Physik, Johannes Kepler University Linz, Altenberger Str. 69, 4040 Linz, Austria.
authors.forename: Thanh-Chung
authors.initials: TC
authors.lastname: Dinh
authors.affiliation: Institut für Theoretische Physik, Johannes Kepler University Linz, Altenberger Str. 69, 4040 Linz, Austria.
authors.forename: Thomas
authors.initials: T
authors.lastname: Renger
mesh_terms: D001937:Brassica; D002734:Chlorophyll / Q000737:chemistry*; D000077194:Chlorophyll A; D061146:Chlorophyll Binding Proteins / Q000737:chemistry*; D002942:Circular Dichroism; D019281:Dimerization; D008958:Models, Molecular; D012399:Rotation; D013696:Temperature; D014732:Vibration; D014867:Water / Q000737:chemistry
chemical_list: D061146:Chlorophyll Binding Proteins; D014867:Water; D002734:Chlorophyll; C037184:chlorophyll b; D000077194:Chlorophyll A