title: Phylogeny and systematics of deep-sea precious corals (Anthozoa: Octocorallia: Coralliidae).
abstract: The phylogeny of Coralliidae is being increasingly studied to elucidate their evolutionary history and species delimitation due to global concerns about their conservation. Previous studies on phylogenetic relationships within Coralliidae have pointed out that the two currently recognized genera are not monophyletic and the Coralliidae should be divided into three genera. In order to provide a comprehensive revision of the taxonomy of Coralliidae, we documented 110 specimens using eight mitochondrial and one nuclear loci to reconstruct their phylogeny. The morphological features of 27 type specimens were also examined. Phylogenetic relationships based on both mitochondrial and nuclear markers revealed two reciprocally monophyletic clades of Coralliidae. One of the clades was further split into two subclades with respect to sequence variation and observable morphological features. Based on the results of genealogical analyses and distinctive morphological features, the three genera classification of Coralliidae proposed by Gray (1867) was redefined. In this revised taxonomic system, Corallium, Hemicorallium, and Pleurocorallium consist of 7, 16 and 14 species, respectively. Our results also showed that the cosmopolitan Hemicorallium laauense is a species complex containing a cryptic species.
authors.affiliation: Institute of Oceanography, National Taiwan University, Taipei 106, Taiwan.
authors.forename: Tzu-Hsuan
authors.initials: TH
authors.lastname: Tu
authors.affiliation: Institute of Oceanography, National Taiwan University, Taipei 106, Taiwan.
authors.forename: Chang-Feng
authors.initials: CF
authors.lastname: Dai
authors.affiliation: Biodiversity Research Center, Academia Sinica, Taipei 115, Taiwan. Electronic address: jengms@gate.sinica.edu.tw.
authors.forename: Ming-Shiou
authors.initials: MS
authors.lastname: Jeng
mesh_terms: D000818:Animals; D037421:Anthozoa / Q000145:classification* / Q000235:genetics; D001499:Bayes Theorem; D005075:Biological Evolution; D002467:Cell Nucleus / Q000235:genetics; D004272:DNA, Mitochondrial / Q000235:genetics; D014644:Genetic Variation; D016013:Likelihood Functions; D008957:Models, Genetic; D010802:Phylogeny; D017422:Sequence Analysis, DNA
chemical_list: D004272:DNA, Mitochondrial
keywords: Coralliidae; Corallium; Deep-sea octocoral; Hemicorallium; Pleurocorallium; Precious coral