title: A web interface for easy flexible protein-protein docking with ATTRACT.
abstract: Protein-protein docking programs can give valuable insights into the structure of protein complexes in the absence of an experimental complex structure. Web interfaces can facilitate the use of docking programs by structural biologists. Here, we present an easy web interface for protein-protein docking with the ATTRACT program. While aimed at nonexpert users, the web interface still covers a considerable range of docking applications. The web interface supports systematic rigid-body protein docking with the ATTRACT coarse-grained force field, as well as various kinds of protein flexibility. The execution of a docking protocol takes up to a few hours on a standard desktop computer.
authors: Physics Department, Technische Universität München, Garching, Germany. Electronic address: sjoerd@tum.de.
authors: Sjoerd J
authors: SJ
authors: de Vries
authors: Physics Department, Technische Universität München, Garching, Germany.
authors: Christina E M
authors: CE
authors: Schindler
authors: Physics Department, Technische Universität München, Garching, Germany.
authors: Isaure
authors: I
authors: Chauvot de Beauchêne
authors: Physics Department, Technische Universität München, Garching, Germany.
authors: Martin
authors: M
authors: Zacharias
mesh_terms: D000818:Animals; D018932:Chemokine CCL2 / Q000378:metabolism; D020407:Internet; D051379:Mice; D008958:Models, Molecular; D011485:Protein Binding; D025941:Protein Interaction Mapping / Q000379:methods*; D012984:Software; D014584:User-Computer Interface; D014764:Viral Proteins / Q000378:metabolism
chemical_list: C491768:Ccl2 protein, mouse; D018932:Chemokine CCL2; D014764:Viral Proteins
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