title: Viewing multiple sequence alignments with the JavaScript Sequence Alignment Viewer (JSAV).
abstract: The JavaScript Sequence Alignment Viewer (JSAV) is designed as a simple-to-use JavaScript component for displaying sequence alignments on web pages. The display of sequences is highly configurable with options to allow alternative coloring schemes, sorting of sequences and 'dotifying' repeated amino acids. An option is also available to submit selected sequences to another web site, or to other JavaScript code. JSAV is implemented purely in JavaScript making use of the JQuery and JQuery-UI libraries. It does not use any HTML5-specific options to help with browser compatibility. The code is documented using JSDOC and is available from http://www.bioinf.org.uk/software/jsav/.
authors: Institute of Structural and Molecular Biology, Division of Biosciences, University College London, London, WC1E 6BT, UK.
authors: Andrew C R
authors: AC
authors: Martin
keywords: JavaScript; protein; sequence alignment
references: Nucleic Acids Res. 2014 Jul;42(Web Server issue):W3-6
references: 24813445
references: Bioinformatics. 2000 Mar;16(3):286-7
references: 10869021
references: Comput Appl Biosci. 1987 Mar;3(1):37-43
references: 3453212
references: Bioinformatics. 2003 Mar 1;19(4):544-5
references: 12611813
references: Bioinformatics. 2003 Jan 22;19(2):299-300
references: 12538259
references: F1000Res. 2014 Feb 13;3:55
references: 25075290
references: Bioinformatics. 2013 Apr 1;29(7):953-4
references: 23396123
references: F1000Res. 2014 Feb 13;3:52
references: 25075289
references: PLoS One. 2014 Apr 11;9(4):e94150
references: 24727730
references: Comput Appl Biosci. 1996 Dec;12(6):543-8
references: 9021275
references: Gene. 1998 Oct 9;221(1):GC57-63
references: 9852962
references: Nucleic Acids Res. 1997 Dec 15;25(24):4876-82
references: 9396791
references: Comput Appl Biosci. 1993 Dec;9(6):735-40
references: 7511479
references: Comp Funct Genomics. 2004;5(1):56-60
references: 18629035
references: Comput Biol Med. 2001 Jul;31(4):259-67
references: 11334635
references: Bioinformatics. 2004 Feb 12;20(3):426-7
references: 14960472
references: Bioinformatics. 2012 Apr 1;28(7):1038-9
references: 22308148
references: Bioinformatics. 2014 Jan 1;30(1):121-2
references: 24273246
references: Comput Appl Biosci. 1992 Dec;8(6):535-8
references: 1468008
references: BMC Res Notes. 2014 Jul 23;7:468
references: 25056180