title: Microbial communities associated with anaerobic degradation of polybrominated diphenyl ethers in river sediment.
abstract: OBJECTIVE
  Polybrominated diphenyl ethers (PBDEs) are extensively used as a class of flame retardants and have become ubiquitous environmental pollutants. We aimed to uncover the changes in microbial community with PBDE anaerobic degradation with and without zero-valent iron in sediment from the Erren River, considered one of the most heavily contaminated rivers in Taiwan.
  
  
  METHODS
  PBDE anaerobic degradation in sediment was analyzed by gas chromatography with an electron capture detector. Microbial community composition was analyzed by a pyrosequencing-based metagenomic approach.
  
  
  RESULTS
  The anaerobic degradation rate of BDE-209 was higher than BDE-28 in sediment; the addition of zero-valent iron enhanced the degradation rates of both. In total, 19 known bacterial genera (4 major genera: Clostridium, Lysinibacillus, Rummeliibacillus, and Brevundimonas) were considered PBDE degradation-associated bacteria (sequence frequency negatively correlated with PBDE remaining percentage) as were four known archaea genera (Methanobacterium, Methanosarcina, Methanocorpusculum, and Halalkalicoccus; sequence frequency positively correlated with PBDE remaining percentage).
  
  
  CONCLUSIONS
  The composition of bacteria and that of archaea affected the anaerobic degradation of BDE-28 and BDE-209. The addition of zero-valent iron further decreased the archaea content to undetectable levels.
authors: Department of Microbiology, Soochow University, Taipei, Taiwan.
authors: Chu-Wen
authors: CW
authors: Yang
authors: Department of Microbiology, Soochow University, Taipei, Taiwan.
authors: Huang-Wen
authors: HW
authors: Huang
authors: Department of Microbiology, Soochow University, Taipei, Taiwan. Electronic address: bvchang@scu.edu.tw.
authors: Bea-Ven
authors: BV
authors: Chang
mesh_terms: D000693:Anaerobiosis; D001105:Archaea / Q000145:classification* / Q000235:genetics / Q000378:metabolism; D001419:Bacteria / Q000145:classification* / Q000235:genetics / Q000378:metabolism; D058448:Biota; D001711:Biotransformation; D002849:Chromatography, Gas; D019015:Geologic Sediments / Q000382:microbiology*; D055768:Halogenated Diphenyl Ethers / Q000378:metabolism*; D007501:Iron / Q000378:metabolism; D056186:Metagenomics; D045483:Rivers / Q000382:microbiology*; D017422:Sequence Analysis, DNA; D013624:Taiwan
chemical_list: D055768:Halogenated Diphenyl Ethers; D007501:Iron
keywords: BDE-209; BDE-28; anaerobic degradation; microbial community