title: High-altitude adaptation of Tibetan chicken from MT-COI and ATP-6 perspective.
abstract: The problem of hypoxia adaptation in high altitudes is an unsolved brainteaser in the field of life sciences. As one of the best chicken breeds with adaptability to highland environment, the Tibetan chicken, is genetically different from lowland chicken breeds. In order to gain a better understanding of the mechanism of hypoxic adaptability in high altitude, in the present study, we focused on the MT-COI together with ATP-6 gene to explore the regulatory mechanisms for hypoxia adaptability in Tibet chicken. Here, we sequenced MT-COI of 29 Tibetan chickens and 30 Chinese domestic chickens and ATP-6 gene of 28 Tibetan chickens and 29 Chinese domestic chickens. In MT-COI gene, 9 single nucleotide polymorphisms (SNPs) were detected though none of these was a missense mutation, confirming the fact that MT-COI gene is a largely conservative sequence. In ATP-6 gene, 6 single nucleotide polymorphisms (SNPs) were detected and we found a missense mutation (m.9441G > A) in the ATP-6 gene of Tibetan chicken resulting in an amino acid substitution. Due to the critical role of ATP-6 gene in the proton translocation and energy metabolism, we speculated the possibility of this mutation playing an important role in easier energy conversion and metabolism in Tibetan chickens than Chinese domestic chickens so as to better adapt to the harsh environment of the high-altitude areas. The Median-joining profile also suggested that haplotype Ha2 has the ancestral position to the other haplotypes and has significant relationship with high-altitude adaptation in ATP-6 gene. Therefore, we considered that the polymorphism (m.9441G > A) in the ATP-6 gene may affect the specific functions of ATP-6 enzyme relating to high-altitude adaptation of Tibetan chicken and MT-COI gene is a largely conservative sequence.
authors.affiliation: a Farm Animal Genetic Resources Exploration and Innovation Key Laboratory of Sichuan Province, Sichuan Agricultural University , Ya'an , P.R. China.
authors.forename: Xiaoling
authors.initials: X
authors.lastname: Zhao
authors.affiliation: a Farm Animal Genetic Resources Exploration and Innovation Key Laboratory of Sichuan Province, Sichuan Agricultural University , Ya'an , P.R. China.
authors.forename: Nan
authors.initials: N
authors.lastname: Wu
authors.affiliation: a Farm Animal Genetic Resources Exploration and Innovation Key Laboratory of Sichuan Province, Sichuan Agricultural University , Ya'an , P.R. China.
authors.forename: Qing
authors.initials: Q
authors.lastname: Zhu
authors.affiliation: a Farm Animal Genetic Resources Exploration and Innovation Key Laboratory of Sichuan Province, Sichuan Agricultural University , Ya'an , P.R. China.
authors.forename: Uma
authors.initials: U
authors.lastname: Gaur
authors.affiliation: a Farm Animal Genetic Resources Exploration and Innovation Key Laboratory of Sichuan Province, Sichuan Agricultural University , Ya'an , P.R. China.
authors.forename: Ting
authors.initials: T
authors.lastname: Gu
authors.affiliation: a Farm Animal Genetic Resources Exploration and Innovation Key Laboratory of Sichuan Province, Sichuan Agricultural University , Ya'an , P.R. China.
authors.forename: Diyan
authors.initials: D
authors.lastname: Li
mesh_terms: D000222:Adaptation, Physiological; D000531:Altitude; D000818:Animals; D002645:Chickens / Q000235:genetics* / Q000502:physiology; D003576:Electron Transport Complex IV / Q000235:genetics*; D050259:Genes, Mitochondrial; D025261:Mitochondrial Proton-Translocating ATPases / Q000235:genetics*; D020125:Mutation, Missense; D020641:Polymorphism, Single Nucleotide
chemical_list: D003576:Electron Transport Complex IV; D025261:Mitochondrial Proton-Translocating ATPases
keywords: Adaptive analysis ATP-6 gene; MT-COI gene; hypoxia; tibetan chicken