title: Structural stability of myoglobin and glycomyoglobin: a comparative molecular dynamics simulation study.
abstract: Glycoproteins are formed as the result of enzymatic glycosylation or chemical glycation in the body, and produced in vitro in industrial processes. The covalently attached carbohydrate molecule(s) confer new properties to the protein, including modified stability. In the present study, the structural stability of a glycoprotein form of myoglobin, bearing a glucose unit in the N-terminus, has been compared with its native form by the use of molecular dynamics simulation. Both structures were subjected to temperatures of 300 and 500 K in an aqueous environment for 10 ns. Changes in secondary structures and RMSD were then assessed. An overall higher stability was detected for glycomyoglobin, for which the most stable segments/residues were highlighted and compared with the native form. The simple addition of a covalently bound glucose is suggested to exert its stabilizing effect via increased contacts with surrounding water molecules, as well as a different pattern of interactions with neighbor residues.
authors.affiliation: School of Chemistry, College of Science, University of Tehran, Tehran, Iran.
authors.forename: Joulia
authors.initials: J
authors.lastname: Alizadeh-Rahrovi
authors.forename: Alireza
authors.initials: A
authors.lastname: Shayesteh
authors.forename: Azadeh
authors.initials: A
authors.lastname: Ebrahim-Habibi
mesh_terms: D005947:Glucose / Q000378:metabolism; D006023:Glycoproteins / Q000737:chemistry* / Q000378:metabolism; D006031:Glycosylation; D006801:Humans; D056004:Molecular Dynamics Simulation; D009211:Myoglobin / Q000737:chemistry* / Q000378:metabolism; D055550:Protein Stability; D017433:Protein Structure, Secondary; D013696:Temperature
chemical_list: D006023:Glycoproteins; D009211:Myoglobin; D005947:Glucose