title: Molecular phylogeny of Arcoidea with emphasis on Arcidae species (Bivalvia: Pteriomorphia) along the coast of China: challenges to current classification of arcoids.
abstract: The current classifications of arcoids are based on phenetic similarity, which display considerable convergence in several shell and anatomical characters, challenging phylogenetic analysis. Independent molecular analysis of DNA sequences is often necessary for accurate taxonomic assignments of arcoids, especially when morphological characters are equivocal. Here we present molecular evidence of the phylogenetic relationships among arcoid species based on Bayesian inference and Maximum Likelihood analyses of three nuclear genes (18SrRNA, 28SrRNA, and histone H3) and two mitochondrial genes (COI and 12S). Tree topologies are discussed by considering traditional arrangements of taxonomic units and previous molecular studies. The results confirm the monophyly of the order Arcoida, the family Noetiidae, and the subfamilies Anadarinae and Striarcinae, with support for the inclusion of the Glycymerididae in the Arcoidea. The subfamily Arcinae and the genera Arca, Barbatia, Scapharca, Anadara, and Glycymeris are non-monophyletic, suggesting that taxonomic issues still remain. The families Noetiidae, Cucullaeidae, and Glycymerididae appear as subgroups within, rather than sister groups to, the Arcidae. This study strongly suggests the need to carry out a taxonomic revision of the Arcoidea, especially the Arcidae, through combined analysis of morphological, paleontological, and molecular data.
authors.affiliation: Key Laboratory of Mariculture, Ministry of Education, Ocean University of China, Qingdao 266003, China.
authors.forename: Yanwei
authors.initials: Y
authors.lastname: Feng
authors.affiliation: Key Laboratory of Mariculture, Ministry of Education, Ocean University of China, Qingdao 266003, China. Electronic address: qili66@ouc.edu.cn.
authors.forename: Qi
authors.initials: Q
authors.lastname: Li
authors.affiliation: Key Laboratory of Mariculture, Ministry of Education, Ocean University of China, Qingdao 266003, China.
authors.forename: Lingfeng
authors.initials: L
authors.lastname: Kong
mesh_terms: D000818:Animals; D049893:Arcidae / Q000145:classification*; D001499:Bayes Theorem; D002681:China; D004272:DNA, Mitochondrial / Q000235:genetics; D003576:Electron Transport Complex IV / Q000235:genetics; D006657:Histones / Q000235:genetics; D016013:Likelihood Functions; D010802:Phylogeny; D012335:RNA, Ribosomal / Q000235:genetics; D012337:RNA, Ribosomal, 18S / Q000235:genetics; D012339:RNA, Ribosomal, 28S / Q000235:genetics; D017422:Sequence Analysis, DNA
chemical_list: D004272:DNA, Mitochondrial; D006657:Histones; D012335:RNA, Ribosomal; D012337:RNA, Ribosomal, 18S; D012339:RNA, Ribosomal, 28S; C075526:RNA, ribosomal, 12S; D003576:Electron Transport Complex IV
keywords: Arcoida classification; Arcoidea; Molecular phylogeny; Multilocus sequence