title: Multiscale impact of nucleotides and cations on the conformational equilibrium, elasticity and rheology of actin filaments and crosslinked networks.
abstract: Cells are able to respond to mechanical forces and deformations. The actin cytoskeleton, a highly dynamic scaffolding structure, plays an important role in cell mechano-sensing. Thus, understanding rheological behaviors of the actin cytoskeleton is critical for delineating mechanical behaviors of cells. The actin cytoskeleton consists of interconnected actin filaments (F-actin) that form via self-assembly of actin monomers. It has been shown that molecular changes of the monomer subunits impact the rigidity of F-actin. However, it remains inconclusive whether or not the molecular changes can propagate to the network level and thus alter the rheological properties of actin networks. Here, we focus on how cation binding and nucleotide state tune the molecular conformation and rigidity of F-actin and a representative rheological behavior of actin networks, strain-stiffening. We employ a multiscale approach by combining established computational techniques: molecular dynamics, normal mode analysis and Brownian dynamics. Our findings indicate that different combinations of nucleotide (ATP, ADP or ADP-Pi) and cation [Formula: see text] or [Formula: see text] at one or multiple sites) binding change the molecular conformation of F-actin by varying inter- and intra-strand interactions which bridge adjacent subunits between and within F-actin helical strands. This is reflected in the rigidity of actin filaments against bending and stretching. We found that differences in extension and bending rigidity of F-actin induced by cation binding to the low-, intermediate- and high-affinity sites vary the strain-stiffening response of actin networks crosslinked by rigid crosslinkers, such as scruin, whereas they minimally impact the strain-stiffening response when compliant crosslinkers, such as filamin A or [Formula: see text]-actinin, are used.
authors.affiliation: Department of Mechanical and Aerospace Engineering, Politecnico di Torino, corso Duca degli Abruzzi 24, 10129, Turin, Italy.
authors.forename: Tamara Carla
authors.initials: TC
authors.lastname: Bidone
authors.forename: Taeyoon
authors.initials: T
authors.lastname: Kim
authors.forename: Marco A
authors.initials: MA
authors.lastname: Deriu
authors.forename: Umberto
authors.initials: U
authors.lastname: Morbiducci
authors.forename: Roger D
authors.initials: RD
authors.lastname: Kamm
mesh_terms: D008841:Actin Cytoskeleton / Q000737:chemistry* / Q000648:ultrastructure*; D000199:Actins / Q000737:chemistry / Q000648:ultrastructure; D002412:Cations / Q000737:chemistry*; D003198:Computer Simulation; D003432:Cross-Linking Reagents / Q000737:chemistry; D055119:Elastic Modulus; D017276:Friction; D040542:Mechanotransduction, Cellular; D008956:Models, Chemical; D008958:Models, Molecular; D009711:Nucleotides / Q000737:chemistry*; D011487:Protein Conformation; D013314:Stress, Mechanical; D014783:Viscosity
chemical_list: D000199:Actins; D002412:Cations; D003432:Cross-Linking Reagents; D009711:Nucleotides