title: Founder haplotype analysis of Fanconi anemia in the Korean population finds common ancestral haplotypes for a FANCG variant.
abstract: A common ancestral haplotype is strongly suggested in the Korean and Japanese patients with Fanconi anemia (FA), because common mutations have been frequently found: c.2546delC and c.3720_3724delAAACA of FANCA; c.307+1G>C, c.1066C>T, and c.1589_1591delATA of FANCG. Our aim in this study was to investigate the origin of these common mutations of FANCA and FANCG. We genotyped 13 FA patients consisting of five FA-A patients and eight FA-G patients from the Korean FA population. Microsatellite markers used for haplotype analysis included four CA repeat markers which are closely linked with FANCA and eight CA repeat markers which are contiguous with FANCG. As a result, Korean FA-A patients carrying c.2546delC or c.3720_3724delAAACA did not share the same haplotypes. However, three unique haplotypes carrying c.307+1G>C, c.1066C > T, or c.1589_1591delATA, that consisted of eight polymorphic loci covering a flanking region were strongly associated with Korean FA-G, consistent with founder haplotypes reported previously in the Japanese FA-G population. Our finding confirmed the common ancestral haplotypes on the origins of the East Asian FA-G patients, which will improve our understanding of the molecular population genetics of FA-G. To the best of our knowledge, this is the first report on the association between disease-linked mutations and common ancestral haplotypes in the Korean FA population.
authors.affiliation: Department of Laboratory Medicine, College of Medicine, The Catholic University of Korea, Seoul, Republic of Korea; Catholic Genetic Laboratory Center, College of Medicine, The Catholic University of Korea, Seoul, Republic of Korea.
authors.forename: Joonhong
authors.initials: J
authors.lastname: Park
authors.forename: Myungshin
authors.initials: M
authors.lastname: Kim
authors.forename: Woori
authors.initials: W
authors.lastname: Jang
authors.forename: Hyojin
authors.initials: H
authors.lastname: Chae
authors.forename: Yonggoo
authors.initials: Y
authors.lastname: Kim
authors.forename: Nack-Gyun
authors.initials: NG
authors.lastname: Chung
authors.forename: Jae-Wook
authors.initials: JW
authors.lastname: Lee
authors.forename: Bin
authors.initials: B
authors.lastname: Cho
authors.forename: Dae-Chul
authors.initials: DC
authors.lastname: Jeong
authors.forename: In Yang
authors.initials: IY
authors.lastname: Park
authors.forename: Mi Sun
authors.initials: MS
authors.lastname: Park
mesh_terms: D044466:Asian People / Q000235:genetics; D004252:DNA Mutational Analysis; D005199:Fanconi Anemia / Q000235:genetics*; D052217:Fanconi Anemia Complementation Group A Protein / Q000235:genetics; D052241:Fanconi Anemia Complementation Group G Protein / Q000235:genetics*; D005260:Female; D018703:Founder Effect; D005787:Gene Frequency; D005838:Genotype; D006239:Haplotypes; D006801:Humans; D008297:Male; D018895:Microsatellite Repeats; D010375:Pedigree; D056910:Republic of Korea
chemical_list: C498471:FANCA protein, human; C499909:FANCG protein, human; D052217:Fanconi Anemia Complementation Group A Protein; D052241:Fanconi Anemia Complementation Group G Protein
keywords: Common ancestral haplotypes; FANCA; FANCG; Fanconi anemia; haplotype analysis