3D pharmacophoric similarity improves multi adverse drug event identification in pharmacovigilance.
Adverse drugs events (ADEs) detection constitutes a considerable concern in patient safety and public health care. For this reason, it is important to develop methods that improve ADE signal detection in pharmacovigilance databases. Our objective is to apply 3D pharmacophoric similarity models to enhance ADE recognition in Offsides, a pharmacovigilance resource with drug-ADE associations extracted from the FDA Adverse Event Reporting System (FAERS). We developed a multi-ADE predictor implementing 3D drug similarity based on a pharmacophoric approach, with an ADE reference standard extracted from the SIDER database. The results showed that the application of our 3D multi-type ADE predictor to the pharmacovigilance data in Offsides improved ADE identification and generated enriched sets of drug-ADE signals. The global ROC curve for the Offsides ADE candidates ranked with the 3D similarity score showed an area of 0.7. The 3D predictor also allows the identification of the most similar drug that causes the ADE under study, which could provide hypotheses about mechanisms of action and ADE etiology. Our method is useful in drug development, screening potential adverse effects in experimental drugs, and in drug safety, applicable to the evaluation of ADE signals selected through pharmacovigilance data mining.
Department of Biomedical Informatics, Columbia University Medical Center, New York, NY, USA.
Santiago
S
Vilar
Department of Biomedical Informatics, Columbia University Medical Center, New York, NY, USA.
Nicholas P
NP
Tatonetti
Department of Biomedical Informatics, Columbia University Medical Center, New York, NY, USA.
George
G
Hripcsak
D016208:Databases, Factual; D064420:Drug-Related Side Effects and Adverse Reactions; D006801:Humans; D008962:Models, Theoretical; D004364:Pharmaceutical Preparations / Q000737:chemistry*; D060735:Pharmacovigilance; D012372:ROC Curve; D015203:Reproducibility of Results
D004364:Pharmaceutical Preparations