Identification of EeSt-genome species in Pseudoroegneria and Elytrigia (Poaceae: Triticeae) by using SCAR markers from ITS sequences.
To detect E(e)St-genome species in Pseudoroegneria and Elytrigia, the primers ES45 (5'-GTAGGCGACGGTTTTCA-3') and ES261 (5'-TCGCTACGTTCTTCATC-3') were designed as sequence characterized amplified region markers based on the 6-base pair indel in internal transcribed spacer 1 (ITS1) regions and conserved sites in the 5.8S regions, respectively. Polymerase chain reaction of ITS fragments in 27 Triticeae accessions was used for amplification with a touchdown thermocycling profile. Two amplicons were purified, sequenced, and aligned. The results indicated that: 1) primers ES45 and ES261 generated the expected products, 2) ITS sequences of E(e)St-genome species are characterized by a 6-base pair indel, and 3) 13 taxa in Pseudoroegneria and Elytrigia should be included in Trichopyrum. The primers ES45 and ES261 were useful for detecting ITS fragments with 6-bp indel and are helpful for clarifying taxonomic classifications of EeSt-genome species in Triticeae.
Research Center for Preclinical Medicine, Luzhou Medical College, Luzhou, Sichuan Province, China.
Z H
ZH
Tao
Research Center for Preclinical Medicine, Luzhou Medical College, Luzhou, Sichuan Province, China 719470912@qq.com.
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Yin
D021903:DNA, Ribosomal Spacer / Q000235:genetics*; D018745:Genome, Plant; D054643:INDEL Mutation / Q000235:genetics; D010802:Phylogeny; D006109:Poaceae / Q000235:genetics*; D011123:Polyploidy
D021903:DNA, Ribosomal Spacer