Molecular modeling and docking study on dopamine D2-like and serotonin 5-HT2A receptors.
Psychiatric disorders, such as schizophrenia, bipolar disorder and major depression, are paid more and more attention by human due to their upward tendency in modern society. D2-like and 5-HT2A receptors have been proposed as targets of antipsychotic drugs. Atypical antipsychotic drugs have been deemed to improve the treatment of positive, negative and extrapyramidal symptoms. Unfortunately, no experimental structures for these receptors are available except D3 receptor (D3R). Therefore, it is necessary to construct structures of D2-like and 5-HT2A receptors to investigate the interaction between these receptors and their antagonists. Accordingly, homology models of dopamine D2, D3, D4 and serotonin 5-HT2A receptors have been built on the high-resolution crystal structure of the β2-adrenergic receptor, and refined by molecular dynamics simulations. The backbone root-mean-square deviation (RMSD) of D3R model relative to crystal structure is 1.3Å, which proves the reliability of homology modeling. Docking studies reveal that the binding modes of four homology models and their antagonists are consistent with experimental site-directed mutagenesis data. The calculated pKi values agree well with the experimental pKi ones. Antagonists with linear structures such as butyrophenones and benzisoxazolyl piperidines are easily docked into D2-like and 5-HT2A receptors. Polycyclic aromatic compounds have weaker affinity with four receptors. Homology models of D2-like and 5-HT2A receptors will be helpful for predicting the affinity of novel ligands, and could be used as three-dimensional (3D) templates for antipsychotic virtual screening and further drug discovery.
State Key Laboratory of Chemical Resource Engineering, Institute of Materia Medica, College of Science, Beijing University of Chemical Technology, Beijing 100029, PR China.
Xinli
X
Duan
State Key Laboratory of Chemical Resource Engineering, Institute of Materia Medica, College of Science, Beijing University of Chemical Technology, Beijing 100029, PR China.
Min
M
Zhang
State Key Laboratory of Chemical Resource Engineering, Institute of Materia Medica, College of Science, Beijing University of Chemical Technology, Beijing 100029, PR China.
Xin
X
Zhang
College of Life Science and Technology, Beijing University of Chemical Technology, Beijing 100029, PR China. Electronic address: wangfang@mail.buct.edu.cn.
Fang
F
Wang
State Key Laboratory of Chemical Resource Engineering, Institute of Materia Medica, College of Science, Beijing University of Chemical Technology, Beijing 100029, PR China. Electronic address: leim@mail.buct.edu.cn.
Ming
M
Lei
D018360:Crystallography, X-Ray; D006801:Humans; D062105:Molecular Docking Simulation; D017433:Protein Structure, Secondary; D044402:Receptor, Serotonin, 5-HT2A / Q000737:chemistry*; D017448:Receptors, Dopamine D2 / Q000737:chemistry*; D012457:Salicylamides / Q000737:chemistry; D040681:Structural Homology, Protein
D044402:Receptor, Serotonin, 5-HT2A; D017448:Receptors, Dopamine D2; D012457:Salicylamides; C045989:eticlopride
5-Hydroxytryptamine receptor; Docking; Dopamine receptor; Homology modeling; Molecular dynamics