An alternative method for processing northern blots after capillary transfer.
Different laboratories use different methods for the prehybridization, hybridization, and washing steps of the northern blotting procedure. In this protocol, a northern blot is pretreated with Church and Gilbert hybridization buffer to block nonspecific probe-binding sites. The immobilized RNA is then hybridized to a DNA probe specific for the RNA of interest. Finally, the membrane is washed and subjected to autoradiography or phosphorimaging. The solutions and conditions described here may be ideal for those who prefer to use fewer ingredients in their solutions. This protocol is designed to achieve the same goals as other northern blotting approaches. It minimizes background (nonspecific adherence of probe to membrane and nonspecific hybridization) and maximizes specific hybridization to RNAs immobilized on a membrane.
Timothy W
TW
Nilsen
D015152:Blotting, Northern / Q000379:methods*; D002196:Capillaries; D004586:Electrophoresis; D009693:Nucleic Acid Hybridization / Q000379:methods*; D012313:RNA / Q000235:genetics* / Q000302:isolation & purification*
D012313:RNA