Improvement of the soy formate dehydrogenase properties by rational design.
Previous experiments on substitution of the residue Phe290 to Asp, Asn and Ser in NAD(+)-dependent formate dehydrogenase from soya Glycine max (SoyFDH) showed important role of the residue in enzyme thermal stability and catalytic properties (Alekseeva et al. Prot. Eng. Des. Sel., 2012a; 25: :781-88). In this work, we continued site-directed mutagenesis experiments of the Phe290 and the residue was changed to Ala, Thr, Tyr, Glu and Gln. All amino acid changes resulted in increase of catalytic constant from 2.9 to 3.5-4.7 s(-1). The substitution Phe290Ala led to KM (NAD+) decrease from 13.3 to 8.6 μM, and substitutions Phe290Tyr and Phe290Glu resulted in decrease and increase of KM (HCOO-) from 1.5 to 0.9 and -2.9 mM, respectively. The highest improvement of catalytic properties was observed for SoyFDH Phe290Ala which showed 2-fold higher catalytic efficiency with both substrates. Stability of mutants was examined by study of thermal inactivation kinetics and differential scanning calorimetry (DSC). All five amino acids provided increase of thermal stability of mutant SoyFDH in comparison with wild-type enzyme. Mutant SoyFDH Phe290Glu showed the highest improvement-the stabilization effect was 43 at 56°C. The DSC data agree with results of thermal inactivation kinetics. Substitutions Phe290Tyr, Phe290Thr, Phe290Gln and Phe290Glu provided Tm value increase 0.6°-6.6°. SoyFDH Phe290Glu and previously prepared SoyFDH Phe290Asp show similar thermal stability as enzymes from Candida boidinii and Mycobacterium vaccae N10 and have higher catalytic efficiency with NAD(+) compared with all described FDHs. Therefore, these mutants are very perspective enzymes for coenzyme regeneration in processes of chiral synthesis with dehydrogenases.
Department of Chemical Enzymology, Chemistry Faculty, M.V. Lomonosov Moscow State University, 119991 Moscow, Russia Innovations and High Technologies MSU Ltd, 109559 Moscow, Russia.
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Kargov
A.N.Bach Institute of Biochemistry, Russian Academy of Sciences, 119074 Moscow, Russia Koltzov Institute of Developmental Biology, Russian Academy of Science, 119334 Moscow, Russia.
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Kleimenov
Department of Chemical Enzymology, Chemistry Faculty, M.V. Lomonosov Moscow State University, 119991 Moscow, Russia Innovations and High Technologies MSU Ltd, 109559 Moscow, Russia.
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Savin
Department of Chemical Enzymology, Chemistry Faculty, M.V. Lomonosov Moscow State University, 119991 Moscow, Russia Innovations and High Technologies MSU Ltd, 109559 Moscow, Russia A.N.Bach Institute of Biochemistry, Russian Academy of Sciences, 119074 Moscow, Russia.
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Tishkov
Department of Chemical Enzymology, Chemistry Faculty, M.V. Lomonosov Moscow State University, 119991 Moscow, Russia Innovations and High Technologies MSU Ltd, 109559 Moscow, Russia A.N.Bach Institute of Biochemistry, Russian Academy of Sciences, 119074 Moscow, Russia nalexeyeva@gmail.com.
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Alekseeva
D004795:Enzyme Stability; D005560:Formate Dehydrogenases / Q000737:chemistry* / Q000235:genetics / Q000378:metabolism*; D008958:Models, Molecular; D016297:Mutagenesis, Site-Directed; D010940:Plant Proteins / Q000737:chemistry* / Q000235:genetics / Q000378:metabolism*; D011487:Protein Conformation; D013025:Glycine max / Q000201:enzymology*
D010940:Plant Proteins; D005560:Formate Dehydrogenases
modeling; rational design; site-directed mutagenesis; soya Glycine max; structure