title: A New Augmentation Based Algorithm for Extracting Maximal Chordal Subgraphs.
abstract: A graph is chordal if every cycle of length greater than three contains an edge between non-adjacent vertices. Chordal graphs are of interest both theoretically, since they admit polynomial time solutions to a range of NP-hard graph problems, and practically, since they arise in many applications including sparse linear algebra, computer vision, and computational biology. A maximal chordal subgraph is a chordal subgraph that is not a proper subgraph of any other chordal subgraph. Existing algorithms for computing maximal chordal subgraphs depend on dynamically ordering the vertices, which is an inherently sequential process and therefore limits the algorithms' parallelizability. In this paper we explore techniques to develop a scalable parallel algorithm for extracting a maximal chordal subgraph. We demonstrate that an earlier attempt at developing a parallel algorithm may induce a non-optimal vertex ordering and is therefore not guaranteed to terminate with amaximalchordal subgraph. We then give a new algorithm that first computes and then repeatedly augments a spanning chordal subgraph. After proving that the algorithm terminates with a maximal chordal subgraph, we then demonstrate that this algorithm is more amenable to parallelization and that the parallel version also terminates with a maximal chordal subgraph. That said, the complexity of the new algorithm is higher than that of the previous parallel algorithm, although the earlier algorithm computes a chordal subgraph which is not guaranteed to be maximal. We experimented with our augmentation-based algorithm on both synthetic and real-world graphs. We provide scalability results and also explore the effect of different choices for the initial spanning chordal subgraph on both the running time and on the number of edges in the maximal chordal subgraph.
authors.affiliation: University of Nebraska, Omaha; PKI 1110 South 67th St; Omaha, Nebraska, 68182.
authors.forename: Sanjukta
authors.initials: S
authors.lastname: Bhowmick
authors.affiliation: Pomona College; 185 E. Sixth St; Claremont, CA 91711.
authors.forename: Tzu-Yi
authors.initials: TY
authors.lastname: Chen
authors.affiliation: University of Nebraska, Omaha; PKI 1110 South 67th St; Omaha, Nebraska, 68182.
authors.forename: Mahantesh
authors.initials: M
authors.lastname: Halappanavar
keywords: maximal chordal subgraphs; parallel graph algorithms