title: Genome sequence of Trichoderma virens FT-333 from tropical marine climate.
abstract: Environmental factors can cause changes in the content of the fungal genome during evolution. In this study, a fungus used as a biocontrol agent, Trichoderma virens FT-333 (from a tropical marine climate) has been isolated. The genome (38.6 Mbp; GC content, 49.43%) has a total of 12,751 proteins. Gene ontology terms (cellular component and molecular function) and KEGG analyses demonstrated the importance of the secretion function in FT-333. Compared to the other Trichoderma species, copy number of genes related to defense and nutrient utilization was variable.
authors.affiliation: Laboratory of Molecular Genetics, Institute of Biotechnology, College of Bioscience and Biotechnology, National Cheng Kung University, Tainan 70101, Taiwan Translational Center for Marine Biotechnology, National Cheng Kung University, Tainan 70101, Taiwan hkuo@mappi.helsinki.fi.
authors.forename: Hsiao-Che
authors.initials: HC
authors.lastname: Kuo
authors.affiliation: Laboratory of Molecular Genetics, Institute of Biotechnology, College of Bioscience and Biotechnology, National Cheng Kung University, Tainan 70101, Taiwan Translational Center for Marine Biotechnology, National Cheng Kung University, Tainan 70101, Taiwan.
authors.forename: Ting-Yu
authors.initials: TY
authors.lastname: Wang
authors.affiliation: Laboratory of Molecular Genetics, Institute of Biotechnology, College of Bioscience and Biotechnology, National Cheng Kung University, Tainan 70101, Taiwan Translational Center for Marine Biotechnology, National Cheng Kung University, Tainan 70101, Taiwan.
authors.forename: Peng-Peng
authors.initials: PP
authors.lastname: Chen
authors.affiliation: Department of Biochemical Science and Technology, National Chiayi University, Chiayi 60004, Taiwan.
authors.forename: Ruey-Shyang
authors.initials: RS
authors.lastname: Chen
authors.affiliation: Laboratory of Molecular Genetics, Institute of Biotechnology, College of Bioscience and Biotechnology, National Cheng Kung University, Tainan 70101, Taiwan Translational Center for Marine Biotechnology, National Cheng Kung University, Tainan 70101, Taiwan Agriculture Biotechnology Research Center, National Cheng Kung University, Tainan 70101, Taiwan University Center of Bioscience and Biotechnology, National Cheng Kung University, Tainan 70101, Taiwan Research Center of Ocean Environment and Technology, National Cheng Kung University, Tainan 70101, Taiwan.
authors.forename: Tzong-Yueh
authors.initials: TY
authors.lastname: Chen
mesh_terms: D000595:Amino Acid Sequence; D001483:Base Sequence; D003001:Cloning, Molecular; D005656:Fungal Proteins / Q000235:genetics; D018628:Gene Dosage; D005800:Genes, Fungal; D016681:Genome, Fungal; D008969:Molecular Sequence Data; D014242:Trichoderma / Q000235:genetics*; D014329:Tropical Climate
chemical_list: D005656:Fungal Proteins
keywords: biocontrol; environmental factors; filamentous fungi; glycoside hydrolase