title: BaAMPs: the database of biofilm-active antimicrobial peptides.
abstract: Antimicrobial peptides (AMPs) are increasingly being considered as novel agents against biofilms. The development of AMP-based anti-biofilm strategies strongly relies on the design of sequences optimized to target specific features of sessile bacterial/fungal communities. Although several AMP databases have been created and successfully exploited for AMP design, all of these use data collected on peptides tested against planktonic microorganisms. Here, an open-access, manually curated database of AMPs specifically assayed against microbial biofilms (BaAMPs) is presented for the first time. In collecting relevant data from the literature an effort was made to define a minimal standard set of essential information including, for each AMP, the microbial species and biofilm conditions against which it was tested, and the specific assay and peptide concentration used. The availability of these data in an organized framework will benefit anti-biofilm research and support the design of novel molecules active against biofilm. BaAMPs is accessible at http://www.baamps.it.
authors.affiliation: a NEST, Istituto Nanoscienze-CNR and Scuola Normale Superiore , Pisa , Italy.
authors.forename: Mariagrazia
authors.initials: M
authors.lastname: Di Luca
authors.forename: Giuseppe
authors.initials: G
authors.lastname: Maccari
authors.forename: Giuseppantonio
authors.initials: G
authors.lastname: Maisetta
authors.forename: Giovanna
authors.initials: G
authors.lastname: Batoni
mesh_terms: D000890:Anti-Infective Agents / Q000737:chemistry*; D023181:Antimicrobial Cationic Peptides / Q000737:chemistry*; D018441:Biofilms / Q000187:drug effects*; D016208:Databases, Factual; D020407:Internet; D014584:User-Computer Interface
chemical_list: D000890:Anti-Infective Agents; D023181:Antimicrobial Cationic Peptides
keywords: anti-biofilm compounds; antimicrobial peptides; medical biofilms; web database