title: Tracking the metabolic pulse of plant lipid production with isotopic labeling and flux analyses: Past, present and future.
abstract: Metabolism is comprised of networks of chemical transformations, organized into integrated biochemical pathways that are the basis of cellular operation, and function to sustain life. Metabolism, and thus life, is not static. The rate of metabolites transitioning through biochemical pathways (i.e., flux) determines cellular phenotypes, and is constantly changing in response to genetic or environmental perturbations. Each change evokes a response in metabolic pathway flow, and the quantification of fluxes under varied conditions helps to elucidate major and minor routes, and regulatory aspects of metabolism. To measure fluxes requires experimental methods that assess the movements and transformations of metabolites without creating artifacts. Isotopic labeling fills this role and is a long-standing experimental approach to identify pathways and quantify their metabolic relevance in different tissues or under different conditions. The application of labeling techniques to plant science is however far from reaching it potential. In light of advances in genetics and molecular biology that provide a means to alter metabolism, and given recent improvements in instrumentation, computational tools and available isotopes, the use of isotopic labeling to probe metabolism is becoming more and more powerful. We review the principal analytical methods for isotopic labeling with a focus on seminal studies of pathways and fluxes in lipid metabolism and carbon partitioning through central metabolism. Central carbon metabolic steps are directly linked to lipid production by serving to generate the precursors for fatty acid biosynthesis and lipid assembly. Additionally some of the ideas for labeling techniques that may be most applicable for lipid metabolism in the future were originally developed to investigate other aspects of central metabolism. We conclude by describing recent advances that will play an important future role in quantifying flux and metabolic operation in plant tissues.
authors.affiliation: United States Department of Agriculture, Agricultural Research Service, 975 North Warson Road, St. Louis, MO 63132, United States; Donald Danforth Plant Science Center, 975 North Warson Road, St. Louis, MO 63132, United States. Electronic address: doug.allen@ars.usda.gov.
authors.forename: Doug K
authors.initials: DK
authors.lastname: Allen
authors.affiliation: Department of Chemistry and Biochemistry, University of Southern Mississippi, Hattiesburg, MS 39406, United States.
authors.forename: Philip D
authors.initials: PD
authors.lastname: Bates
authors.affiliation: Department of Plant Biology, Michigan State University, East Lansing, MI 48824, United States; Great Lakes Bioenergy Research Center, Michigan State University, East Lansing, MI 48824, United States.
authors.forename: Henrik
authors.initials: H
authors.lastname: Tjellström
mesh_terms: D000818:Animals; D006801:Humans; D007553:Isotope Labeling / Q000379:methods; D050356:Lipid Metabolism; D064688:Metabolic Flux Analysis / Q000379:methods; D053858:Metabolic Networks and Pathways; D010944:Plants / Q000378:metabolism*
keywords: Acyl editing; Central metabolism; Isotopic labeling; Mass spectrometry; Metabolic flux analysis