title: Identification and function analysis of contrary genes in Dupuytren's contracture.
abstract: The present study aimed to analyze the expression of genes involved in Dupuytren's contracture (DC), using bioinformatic methods. The profile of GSE21221 was downloaded from the gene expression ominibus, which included six samples, derived from fibroblasts and six healthy control samples, derived from carpal-tunnel fibroblasts. A Distributed Intrusion Detection System was used in order to identify differentially expressed genes. The term contrary genes is proposed. Contrary genes were the genes that exhibited opposite expression patterns in the positive and negative groups, and likely exhibited opposite functions. These were identified using Coexpress software. Gene ontology (GO) function analysis was conducted for the contrary genes. A network of GO terms was constructed using the reduce and visualize gene ontology database. Significantly expressed genes (801) and contrary genes (98) were screened. A significant association was observed between Chitinase-3-like protein 1 and ten genes in the positive gene set. Positive regulation of transcription and the activation of nuclear factor-κB (NF-κB)-inducing kinase activity exhibited the highest degree values in the network of GO terms. In the present study, the expression of genes involved in the development of DC was analyzed, and the concept of contrary genes proposed. The genes identified in the present study are involved in the positive regulation of transcription and activation of NF-κB-inducing kinase activity. The contrary genes and GO terms identified in the present study may potentially be used for DC diagnosis and treatment.
authors.affiliation: Department of Hand and Foot Surgery, Shengjing Hospital, China Medical University, Shenyang, Liaoning 110003, P.R. China.
authors.forename: Xianglu
authors.initials: X
authors.lastname: Ji
authors.affiliation: Department of Hand and Foot Surgery, Shengjing Hospital, China Medical University, Shenyang, Liaoning 110003, P.R. China.
authors.forename: Feng
authors.initials: F
authors.lastname: Tian
authors.affiliation: Department of Hand and Foot Surgery, Shengjing Hospital, China Medical University, Shenyang, Liaoning 110003, P.R. China.
authors.forename: Lijie
authors.initials: L
authors.lastname: Tian
mesh_terms: D019295:Computational Biology; D004387:Dupuytren Contracture / Q000235:genetics* / Q000473:pathology; D005347:Fibroblasts / Q000473:pathology; D005786:Gene Expression Regulation; D063990:Gene Ontology; D053263:Gene Regulatory Networks; D006801:Humans; D017346:Protein Serine-Threonine Kinases / Q000096:biosynthesis* / Q000235:genetics; D012984:Software; D059467:Transcriptome; D000097782:NF-kappaB-Inducing Kinase
chemical_list: D017346:Protein Serine-Threonine Kinases; D000097782:NF-kappaB-Inducing Kinase