title: RiboTools: a Galaxy toolbox for qualitative ribosome profiling analysis.
abstract: Ribosome profiling provides genome-wide information about translational regulation. However, there is currently no standard tool for the qualitative analysis of Ribo-seq data. We present here RiboTools, a Galaxy toolbox for the analysis of ribosome profiling (Ribo-seq) data. It can be used to detect translational ambiguities, stop codon readthrough events and codon occupancy. It provides a large number of plots for the visualisation of these events.
authors: Institute for Integrative Biology of the Cell (I2BC), CEA, CNRS, Université Paris-Sud, Bat 400, 91400 Orsay, France.
authors: Rachel
authors: R
authors: Legendre
authors: Institute for Integrative Biology of the Cell (I2BC), CEA, CNRS, Université Paris-Sud, Bat 400, 91400 Orsay, France.
authors: Agnès
authors: A
authors: Baudin-Baillieu
authors: Institute for Integrative Biology of the Cell (I2BC), CEA, CNRS, Université Paris-Sud, Bat 400, 91400 Orsay, France.
authors: Isabelle
authors: I
authors: Hatin
authors: Institute for Integrative Biology of the Cell (I2BC), CEA, CNRS, Université Paris-Sud, Bat 400, 91400 Orsay, France.
authors: Olivier
authors: O
authors: Namy
mesh_terms: D018388:Codon, Terminator; D019295:Computational Biology / Q000379:methods*; D030541:Databases, Genetic; D020869:Gene Expression Profiling / Q000379:methods*; D005786:Gene Expression Regulation; D016681:Genome, Fungal; D059014:High-Throughput Nucleotide Sequencing; D006801:Humans; D011328:Prions / Q000235:genetics / Q000378:metabolism; D014176:Protein Biosynthesis; D012270:Ribosomes / Q000235:genetics* / Q000378:metabolism*; D012441:Saccharomyces cerevisiae / Q000235:genetics*; D012984:Software
chemical_list: D018388:Codon, Terminator; D011328:Prions