title: Gaining insights into the codon usage patterns of TP53 gene across eight mammalian species.
abstract: TP53 gene is known as the "guardian of the genome" as it plays a vital role in regulating cell cycle, cell proliferation, DNA damage repair, initiation of programmed cell death and suppressing tumor growth. Non uniform usage of synonymous codons for a specific amino acid during translation of protein known as codon usage bias (CUB) is a unique property of the genome and shows species specific deviation. Analysis of codon usage bias with compositional dynamics of coding sequences has contributed to the better understanding of the molecular mechanism and the evolution of a particular gene. In this study, the complete nucleotide coding sequences of TP53 gene from eight different mammalian species were used for CUB analysis. Our results showed that the codon usage patterns in TP53 gene across different mammalian species has been influenced by GC bias particularly GC3 and a moderate bias exists in the codon usage of TP53 gene. Moreover, we observed that nature has highly favored the most over represented codon CTG for leucine amino acid but selected against the ATA codon for isoleucine in TP53 gene across all mammalian species during the course of evolution.
authors: Department of Biotechnology, Assam University, Silchar-788011, Assam, India.
authors: Tarikul Huda
authors: TH
authors: Mazumder
authors: Department of Biotechnology, Assam University, Silchar-788011, Assam, India.
authors: Supriyo
authors: S
authors: Chakraborty
mesh_terms: D000818:Animals; D003062:Codon / Q000235:genetics*; D019143:Evolution, Molecular; D008322:Mammals / Q000235:genetics*; D013045:Species Specificity; D016159:Tumor Suppressor Protein p53 / Q000235:genetics*
chemical_list: D003062:Codon; D016159:Tumor Suppressor Protein p53