title: Optimization of reproductive management programs using lift chart analysis and cost-sensitive evaluation of classification errors.
abstract: The common practice on most commercial dairy farms is to inseminate all cows that are eligible for breeding, while ignoring (or absorbing) the costs associated with semen and labor directed toward low-fertility cows that are unlikely to conceive. Modern analytical methods, such as machine learning algorithms, can be applied to cow-specific explanatory variables for the purpose of computing probabilities of success or failure associated with upcoming insemination events. Lift chart analysis can identify subsets of high fertility cows that are likely to conceive and are therefore appropriate targets for insemination (e.g., with conventional artificial insemination semen or expensive sex-enhanced semen), as well as subsets of low-fertility cows that are unlikely to conceive and should therefore be passed over at that point in time. Although such a strategy might be economically viable, the management, environmental, and financial conditions on one farm might differ widely from conditions on the next, and hence the reproductive management recommendations derived from such a tool may be suboptimal for specific farms. When coupled with cost-sensitive evaluation of misclassified and correctly classified insemination events, the strategy can be a potentially powerful tool for optimizing the reproductive management of individual farms. In the present study, lift chart analysis and cost-sensitive evaluation were applied to a data set consisting of 54,806 insemination events of primiparous Holstein cows on 26 Wisconsin farms, as well as a data set with 17,197 insemination events of primiparous Holstein cows on 3 Wisconsin farms, where the latter had more detailed information regarding health events of individual cows. In the first data set, the gains in profit associated with limiting inseminations to subsets of 79 to 97% of the most fertile eligible cows ranged from $0.44 to $2.18 per eligible cow in a monthly breeding period, depending on days in milk at breeding and milk yield relative to contemporaries. In the second data set, the strategy of inseminating only a subset consisting of 59% of the most fertile cows conferred a gain in profit of $5.21 per eligible cow in a monthly breeding period. These results suggest that, when used with a powerful classification algorithm, lift chart analysis and cost-sensitive evaluation of correctly classified and misclassified insemination events can enhance the performance and profitability of reproductive management programs on commercial dairy farms.
authors.affiliation: Department of Dairy Science, University of Wisconsin, Madison 53706. Electronic address: shahinfar@wisc.edu.
authors.forename: Saleh
authors.initials: S
authors.lastname: Shahinfar
authors.affiliation: Department of Dairy Science, University of Wisconsin, Madison 53706.
authors.forename: Jerry N
authors.initials: JN
authors.lastname: Guenther
authors.affiliation: Department of Biostatistics and Medical Informatics and Department of Computer Science, University of Wisconsin, Madison 53706.
authors.forename: C David
authors.initials: CD
authors.lastname: Page
authors.affiliation: Department of Dairy Science, University of Wisconsin, Madison 53706.
authors.forename: Afshin S
authors.initials: AS
authors.lastname: Kalantari
authors.affiliation: Department of Dairy Science, University of Wisconsin, Madison 53706.
authors.forename: Victor E
authors.initials: VE
authors.lastname: Cabrera
authors.affiliation: Department of Dairy Science, University of Wisconsin, Madison 53706.
authors.forename: Paul M
authors.initials: PM
authors.lastname: Fricke
authors.affiliation: Department of Dairy Science, University of Wisconsin, Madison 53706.
authors.forename: Kent A
authors.initials: KA
authors.lastname: Weigel
mesh_terms: D000465:Algorithms; D000818:Animals; D001947:Breeding; D002417:Cattle; D003365:Costs and Cost Analysis; D003612:Dairying / Q000379:methods; D005260:Female; D005298:Fertility; D005306:Fertilization; D007315:Insemination, Artificial / Q000662:veterinary*; D008297:Male; D008892:Milk / Q000191:economics; D010298:Parity; D011247:Pregnancy; D012098:Reproduction / Q000502:physiology*; D012661:Semen; D014922:Wisconsin
keywords: cost-sensitive evaluation; dairy cattle; lift chart analysis; machine learning; reproductive management