title: High throughput exopolysaccharide screening platform: from strain cultivation to monosaccharide composition and carbohydrate fingerprinting in one day.
abstract: Microbial exopolysaccharides (EPS) are multifunctional biogenic polymers, which exist in highly diverse chemical structures. To facilitate a fast determination of the carbohydrate composition of novel isolated strains or modified EPS variants a fast screening and analytical method is required. The platform as realized and described in this article is based on the fast carbohydrate analysis via liquid chromatography coupled with ultra violet and electrospray ionization ion trap detection in 96-well format to detect different sugars, sugar derivatives and substituents such as pyruvate. Monosaccharide analysis from hydrolyzed polysaccharides was validated successfully by 16 commercially available polymers with known structure. The method is sensitive enough to distinguish various types of sphingans which solely differ in small alterations in the monomer composition. Even a quantitative detection of single monomers as present in complex plant polysaccharides like karaya gum, with the lowest recovery, was in accordance with literature. Furthermore, 94 bacterial strains for the validation of the screening platform were completely analyzed and 41 EPS producing strains were efficiently identified. Using the method a carbohydrate-fingerprint of the strains was obtained even allowing a very fast differentiation between strains belonging to the same species. This method can become a valuable tool not only in the fast analysis of strain isolates but also in the targeted screening for polysaccharides containing special rare sugars as well in the screening of strain libraries from genetic engineering for altered structures.
authors.affiliation: Chemistry of Biogenic Resources, Technische Universität München, Schulgasse 16, 94315 Straubing, Germany. Electronic address: Broder.Ruehmann@tum.de.
authors.forename: Broder
authors.initials: B
authors.lastname: Rühmann
authors.affiliation: Chemistry of Biogenic Resources, Technische Universität München, Schulgasse 16, 94315 Straubing, Germany. Electronic address: J.Schmid@tum.de.
authors.forename: Jochen
authors.initials: J
authors.lastname: Schmid
authors.affiliation: Chemistry of Biogenic Resources, Technische Universität München, Schulgasse 16, 94315 Straubing, Germany. Electronic address: Sieber@tum.de.
authors.forename: Volker
authors.initials: V
authors.lastname: Sieber
mesh_terms: D001419:Bacteria / Q000254:growth & development / Q000302:isolation & purification* / Q000378:metabolism*; D002853:Chromatography, Liquid; D057166:High-Throughput Screening Assays; D009005:Monosaccharides / Q000032:analysis*; D011134:Polysaccharides / Q000032:analysis*; D021241:Spectrometry, Mass, Electrospray Ionization
chemical_list: D009005:Monosaccharides; D011134:Polysaccharides
keywords: High throughput screening; Microbial exopolysaccharide (EPS); Monosaccharide composition; Small scale cultivation