title: An in vitro enzymatic assay to measure transcription inhibition by gallium(III) and H3 5,10,15-tris(pentafluorophenyl)corroles.
abstract: Chemotherapy often involves broad-spectrum cytotoxic agents with many side effects and limited targeting. Corroles are a class of tetrapyrrolic macrocycles that exhibit differential cytostatic and cytotoxic properties in specific cell lines, depending on the identities of the chelated metal and functional groups. The unique behavior of functionalized corroles towards specific cell lines introduces the possibility of targeted chemotherapy. Many anticancer drugs are evaluated by their ability to inhibit RNA transcription. Here we present a step-by-step protocol for RNA transcription in the presence of known and potential inhibitors. The evaluation of the RNA products of the transcription reaction by gel electrophoresis and UV-Vis spectroscopy provides information on inhibitive properties of potential anticancer drug candidates and, with modifications to the assay, more about their mechanism of action. Little is known about the molecular mechanism of action of corrole cytotoxicity. In this experiment, we consider two corrole compounds: gallium(III) 5,10,15-(tris)pentafluorophenylcorrole (Ga(tpfc)) and freebase analogue 5,10,15-(tris)pentafluorophenylcorrole (tpfc). An RNA transcription assay was used to examine the inhibitive properties of the corroles. Five transcription reactions were prepared: DNA treated with Actinomycin D, triptolide, Ga(tpfc), tpfc at a [complex]:[template DNA base] ratio of 0.01, respectively, and an untreated control. The transcription reactions were analyzed after 4 hr using agarose gel electrophoresis and UV-Vis spectroscopy. There is clear inhibition by Ga(tpfc), Actinomycin D, and triptolide. This RNA transcription assay can be modified to provide more mechanistic detail by varying the concentrations of the anticancer complex, DNA, or polymerase enzyme, or by incubating the DNA or polymerase with the complexes prior to RNA transcription; these modifications would differentiate between an inhibition mechanism involving the DNA or the enzyme. Adding the complex after RNA transcription can be used to test whether the complexes degrade or hydrolyze the RNA. This assay can also be used to study additional anticancer candidates.
authors: Division of Chemistry and Chemical Engineering, California Institute of Technology.
authors: Grace Y
authors: GY
authors: Tang
authors: Division of Chemistry and Chemical Engineering, California Institute of Technology.
authors: Melanie A
authors: MA
authors: Pribisko
authors: Division of Chemistry and Chemical Engineering, California Institute of Technology.
authors: Ryan K
authors: RK
authors: Henning
authors: Department of Molecular Medicine, Beckman Research Institute of the City of Hope.
authors: Punnajit
authors: P
authors: Lim
authors: Department of Molecular Medicine, Beckman Research Institute of the City of Hope.
authors: John
authors: J
authors: Termini
authors: Division of Chemistry and Chemical Engineering, California Institute of Technology.
authors: Harry B
authors: HB
authors: Gray
authors: Division of Chemistry and Chemical Engineering, California Institute of Technology; rhg@caltech.edu.
authors: Robert H
authors: RH
authors: Grubbs
mesh_terms: D045744:Cell Line, Tumor; D056831:Coordination Complexes / Q000737:chemistry / Q000494:pharmacology*; D057075:Enzyme Assays / Q000379:methods*; D005260:Female; D005708:Gallium / Q000737:chemistry / Q000494:pharmacology*; D006801:Humans; D008297:Male; D008665:Metalloporphyrins / Q000737:chemistry / Q000494:pharmacology*; D009369:Neoplasms / Q000188:drug therapy* / Q000201:enzymology / Q000235:genetics; D012313:RNA / Q000737:chemistry / Q000235:genetics*; D013056:Spectrophotometry, Ultraviolet; D014158:Transcription, Genetic / Q000187:drug effects*; D005464:Fluorobenzenes; D005466:Fluorocarbons
chemical_list: D056831:Coordination Complexes; D005708:Gallium; D008665:Metalloporphyrins; D012313:RNA; C442264:tris(pentafluorophenyl)corrole; D005464:Fluorobenzenes; D005466:Fluorocarbons