title: Identification and characterization of calcium transporter gene family in finger millet in relation to grain calcium content.
abstract: Calcium (Ca) is an essential mineral for proper growth and development of plants as well as animals. In plants including cereals, calcium is deposited in seed during its development which is mediated by specialized Ca transporters. Common cereal seeds contain very low amounts of Ca while the finger millet (Eleusine coracana) contains exceptionally high amounts of Ca in seed. In order to understand the role of Ca transporters in grain Ca accumulation, developing seed transcriptome of two finger millet genotypes (GP-1, low Ca and GP-45 high Ca) differing in seed Ca content was sequenced using Illumina paired-end sequencing technology and members of Ca transporter gene family were identified. Out of 109,218 and 120,130 contigs, 86 and 81 contigs encoding Ca transporters were identified in GP-1 and GP-45, respectively. After removal of redundant sequences, a total of 19 sequences were confirmed as Ca transporter genes, which includes 11 Ca(2+) ATPases, 07 Ca(2+)/cation exchangers and 01 Ca(2+) channel. The differential expressions of all genes were analyzed from transcriptome data and it was observed that 9 and 3 genes were highly expressed in GP-45 and GP-1 genotypes respectively. Validation of transcriptome expression data of selected Ca transporter genes was performed on different stages of developing spikes of both genotypes grown under different concentrations of exogenous Ca. In both genotypes, significant correlation was observed between the expression of these genes, especially EcCaX3, and on the amount of Ca accumulated in seed. The positive correlation of seed mass with the amount of Ca concentration was also observed. The efficient Ca transport property and responsiveness of EcCAX3 towards exogenous Ca could be utilized in future biofortification program.
authors: Department of Molecular Biology & Genetic Engineering, College of Basic Science & Humanities, G.B. Pant University of Agriculture & Technology, Pantnagar 263145, Uttarakhand, India; IRRI-South Asia Hub, International Crops Research Institute for the Semi-Arid Tropics, Patancheru 502 324, Telangana State, India.
authors: Uma M
authors: UM
authors: Singh
authors: Department of Molecular Biology & Genetic Engineering, College of Basic Science & Humanities, G.B. Pant University of Agriculture & Technology, Pantnagar 263145, Uttarakhand, India.
authors: Mamta
authors: M
authors: Metwal
authors: Department of Molecular Biology & Genetic Engineering, College of Basic Science & Humanities, G.B. Pant University of Agriculture & Technology, Pantnagar 263145, Uttarakhand, India.
authors: Manoj
authors: M
authors: Singh
authors: Department of Molecular Biology & Genetic Engineering, College of Basic Science & Humanities, G.B. Pant University of Agriculture & Technology, Pantnagar 263145, Uttarakhand, India.
authors: Gohar
authors: G
authors: Taj
authors: Department of Molecular Biology & Genetic Engineering, College of Basic Science & Humanities, G.B. Pant University of Agriculture & Technology, Pantnagar 263145, Uttarakhand, India. Electronic address: anilkumar.mbge@gmail.com.
authors: Anil
authors: A
authors: Kumar
mesh_terms: D000595:Amino Acid Sequence; D002118:Calcium / Q000032:analysis* / Q000378:metabolism; D027682:Cation Transport Proteins / Q000737:chemistry / Q000235:genetics* / Q000302:isolation & purification / Q000378:metabolism; D031748:Eleusine / Q000737:chemistry / Q000235:genetics* / Q000378:metabolism; D008969:Molecular Sequence Data; D012275:Oryza / Q000235:genetics / Q000378:metabolism; D010802:Phylogeny; D017434:Protein Structure, Tertiary; D060888:Real-Time Polymerase Chain Reaction; D059467:Transcriptome
chemical_list: D027682:Cation Transport Proteins; D002118:Calcium
keywords: Ca(2+) ATPase; Ca(2+) channel; Ca(2+)/cation exchanger; Eleusine coracana; Spike transcriptome