title: Genome-wide association analyses for boar taint components and testicular traits revealed regions having pleiotropic effects.
abstract: BACKGROUND
  The aim of this study was to perform a genome-wide association analyses (GWAS) for androstenone, skatole and indole in different Pietrain sire lines and compare the results with previous findings in purebred populations. Furthermore, the genetic relationship of androstenone and skatole were investigated with respect to pleiotropy. In order to characterize the performance of intact boars, crossbred progenies of 136 Pietrain boars mated to crossbred sows from three different breeding companies were tested on four test stations. A total of 598 boars were performance tested according to the rules of stationary performance testing in Germany. Beside common fattening and carcass composition traits, the concentrations of the boar taint components and testicular size parameters were recorded. All boars were genotyped with the PorcineSNP60 Illumina BeadChip. The GWAS were performed using the whole data set as well as in sub groups according to the line of origin. Besides an univariate GWAS approach, principal component (PC) techniques were applied to identify common expression pattern affecting the biosynthesis and the metabolism of androstenone.
  
  
  RESULTS
  In total, 33 SNPs were significantly associated with at least one of the boar taint components. Only one SNP was identified being significant in both subgroups. The analyses of the testes size parameters revealed 31 significant associations. The numbers of significant SNPs within the genetic groups evidenced the strong population specific effects. A multivariate approach using PC revealed 33 significant associations for five different PC.
  
  
  CONCLUSIONS
  Based on Pietrain sired cross bred boars, the mayor objective of our study was to identify QTL for boar taint components and to detect pleiotropy among boar taint and testes traits. The high number of identified QTL revealed that boar taint traits are influenced by a large number of loci. Analyzing pleiotropy allowed identifying a QTL affecting androstenone and the gonasomatic index. In this region, QTL for ovulation rate and age at puberty of sows have been described in literature. This supports the physiological findings that the androstenone level of boars and reproduction performance of sows might be linked by an antagonistic relationship.
authors: Institute of Animal Science, University of Bonn, Endenicher Allee 15, 53115, Bonn, Germany. cgro@itw.uni-bonn.de.
authors: Christine
authors: C
authors: Große-Brinkhaus
authors: Institute of Animal Science, University of Bonn, Endenicher Allee 15, 53115, Bonn, Germany. leoniestorck@gmx.net.
authors: Leonie C
authors: LC
authors: Storck
authors: Institute of Animal Science, University of Bonn, Endenicher Allee 15, 53115, Bonn, Germany. Luc.Frieden@convis.lu.
authors: Luc
authors: L
authors: Frieden
authors: Institute of Animal Science, University of Bonn, Endenicher Allee 15, 53115, Bonn, Germany. cneu@itw.uni-bonn.de.
authors: Christiane
authors: C
authors: Neuhoff
authors: Institute of Animal Science, University of Bonn, Endenicher Allee 15, 53115, Bonn, Germany. ksch@itw.uni-bonn.de.
authors: Karl
authors: K
authors: Schellander
authors: Institute of Animal Science, University of Bonn, Endenicher Allee 15, 53115, Bonn, Germany. cloo@itw.uni-bonn.de.
authors: Christian
authors: C
authors: Looft
authors: Institute of Animal Science, University of Bonn, Endenicher Allee 15, 53115, Bonn, Germany. etho@itw.uni-bonn.de.
authors: Ernst
authors: E
authors: Tholen
mesh_terms: D000818:Animals; D002874:Chromosome Mapping; D005828:Genetics, Population; D055106:Genome-Wide Association Study; D005838:Genotype; D006239:Haplotypes; D006824:Hybridization, Genetic; D015810:Linkage Disequilibrium; D008297:Male; D020641:Polymorphism, Single Nucleotide; D040641:Quantitative Trait Loci; D019655:Quantitative Trait, Heritable; D015203:Reproducibility of Results; D013552:Swine; D013737:Testis / Q000378:metabolism*