title: Comparative screening of single nucleotide polymorphisms in β-casein and κ-casein gene in different livestock breeds of India.
abstract: The most polymorphic milk protein gene is β-casein; 13 protein variants are known in cattle. Milk protein genetic polymorphism has received considerable research interest in recent years because of possible associations between milk protein and economically important traits in livestock. The present study was undertaken to explore the genetic polymorphisms in exon 7 of β-casein and exon 4 of κ-casein genes in Arunachali yaks (Bos grunniens), Sahiwal (Bos indicus) cattle, malpura sheep (Ovis aries) and Gaddi goat (Capra hircus). Results of the study revealed presence of 11 SNP variants in all livestock species. Four SNPs were observed in Bos indicus; two SNPs in Bos grunniens; three SNPs in Ovis aries and three SNPs in Capra hircus. These variations are found to be synonymous in nature as these variations do not result in their corresponding amino acids. A total of five polymorphic sites have been described at the κ-casein (CSN3) locus in the Indian domestic Gaddi goat (Capra hircus) when compared with exotic goat (X60763) while sequence analysis of κ-casein gene in sheep showed three novel nucleotide changes in malpura sheep when compared with the exotic sheep (AY237637). These results highlight the importance of taking into consideration the CSN3 SNPs when performing selection for milk composition in dairy livestock breeds.
authors.affiliation: DNA Fingerprinting Unit, National Bureau of Animal Genetic Resources, Karnal 132001, India ; Division of Veterinary Biotechnology, Indian Veterinary Research Institute, Izatnagar, Bareilly 243122, India.
authors.forename: Lakshya Veer
authors.initials: LV
authors.lastname: Singh
authors.affiliation: DNA Fingerprinting Unit, National Bureau of Animal Genetic Resources, Karnal 132001, India.
authors.forename: S
authors.initials: S
authors.lastname: Jayakumar
authors.affiliation: DNA Fingerprinting Unit, National Bureau of Animal Genetic Resources, Karnal 132001, India.
authors.forename: Anurodh
authors.initials: A
authors.lastname: Sharma
authors.affiliation: Division of Veterinary Biotechnology, Indian Veterinary Research Institute, Izatnagar, Bareilly 243122, India.
authors.forename: Shishir Kumar
authors.initials: SK
authors.lastname: Gupta
authors.affiliation: DNA Fingerprinting Unit, National Bureau of Animal Genetic Resources, Karnal 132001, India.
authors.forename: S P
authors.initials: SP
authors.lastname: Dixit
authors.affiliation: Krishi Bhawan, ICAR, New Delhi, India.
authors.forename: Neelam
authors.initials: N
authors.lastname: Gupta
authors.affiliation: Krishi Bhawan, ICAR, New Delhi, India.
authors.forename: S C
authors.initials: SC
authors.lastname: Gupta
keywords: Livestock breeds; SNPs; β-casein gene; κ-casein