title: Molecular characterization of eimeria species naturally infecting egyptian baldi chickens.
abstract: BACKGROUND
  Coccidiosis is a serious protozoal disease of poultry. The identification of Eimeria species has important implications for diagnosis and control as well as for epidemiology. The molecular characterization of Eimeria species infecting Egyptian baladi chickens was investigated.
  
  
  METHODS
  Eimeria species oocysts were harvested from intestines of naturally infected Egyptian baldi chickens. The morphometry characterization of oocysts along with COCCIMORPH software was done. The DNA was extracted initially by freezing and thawing then the prepared samples was subjected to commercial DNA kits. The DNA products were analyzed through conventional polymerase chain reaction by using amplified region (SCAR) marker.
  
  
  RESULTS
  The PCR results confirmed the presence of 7 Eimeria species in the examined fecal samples of Egyptian baldi breed with their specific ampilicon sizes being E. acervulina (811bp), E. brunette (626bp), E. tenella (539bp), E. maxima (272bp), E. necatrix (200bp), E. mitis (327bp) and E. praecopx (354bp). A sequencing of the two most predominant species of Eimeria was done, on E. tenella and E. máxima. Analysis of the obtained sequences revealed high identities 99% between Egyptian isolates and the reference one. Similarly, E. maxima isolated from Egyptian baldi chickens showed 98% nucleotide identities with the reference strain. Only single nucleotide substitution was observed among the Egyptian E. tenella isolates (A181G) when compared to the reference one. The Egyptian isolates acquired 4 unique mutations (A68T, C164T, G190A and C227G) in compared with the reference sequence.
  
  
  CONCLUSIONS
  This is the first time to identify the 7 species of Eimeria from Egyptian baladi chickens.
authors.affiliation: Parasitology Department, Faculty of Veterinary Medicine, Beni-Suef University, Egypt.
authors.forename: Sahar M
authors.initials: SM
authors.lastname: Gadelhaq
authors.affiliation: Parasitology Department, Faculty of Veterinary Medicine, Beni-Suef University, Egypt.
authors.forename: Waleed M
authors.initials: WM
authors.lastname: Arafa
authors.affiliation: Parasitology Department, Faculty of Veterinary Medicine, Beni-Suef University, Egypt.
authors.forename: Shawky M
authors.initials: SM
authors.lastname: Aboelhadid
keywords: Chickens; DNA; Eimeria species; Nucleotide; PCR; Sequencing