title: New insights into the nutritional regulation of gluconeogenesis in carnivorous rainbow trout (Oncorhynchus mykiss): a gene duplication trail.
abstract: The rainbow trout (Oncorhynchus mykiss) is considered to be a strictly carnivorous fish species that is metabolically adapted for high catabolism of proteins and low utilization of dietary carbohydrates. This species consequently has a "glucose-intolerant" phenotype manifested by persistent hyperglycemia when fed a high-carbohydrate diet. Gluconeogenesis in adult fish is also poorly, if ever, regulated by carbohydrates, suggesting that this metabolic pathway is involved in this specific phenotype. In this study, we hypothesized that the fate of duplicated genes after the salmonid-specific 4th whole genome duplication (Ss4R) may have led to adaptive innovation and that their study might provide new elements to enhance our understanding of gluconeogenesis and poor dietary carbohydrate use in this species. Our evolutionary analysis of gluconeogenic genes revealed that pck1, pck2, fbp1a, and g6pca were retained as singletons after Ss4r, while g6pcb1, g6pcb2, and fbp1b ohnolog pairs were maintained. For all genes, duplication may have led to sub- or neofunctionalization. Expression profiles suggest that the gluconeogenesis pathway remained active in trout fed a no-carbohydrate diet. When trout were fed a high-carbohydrate diet (30%), most of the gluconeogenic genes were non- or downregulated, except for g6pbc2 ohnologs, whose RNA levels were surprisingly increased. This study demonstrates that Ss4R in trout involved adaptive innovation via gene duplication and via the outcome of the resulting ohnologs. Indeed, maintenance of ohnologous g6pcb2 pair may contribute in a significant way to the glucose-intolerant phenotype of trout and may partially explain its poor use of dietary carbohydrates.
authors.affiliation: Institut National de la Recherche Agronomique (INRA), Nutrition, Metabolism and Aquaculture Unit (UR1067), Saint-Pée-sur-Nivelle, France lucie.marandel@st-pee.inra.fr.
authors.forename: Lucie
authors.initials: L
authors.lastname: Marandel
authors.affiliation: Institut National de la Recherche Agronomique (INRA), Nutrition, Metabolism and Aquaculture Unit (UR1067), Saint-Pée-sur-Nivelle, France.
authors.forename: Iban
authors.initials: I
authors.lastname: Seiliez
authors.affiliation: Institut National de la Recherche Agronomique (INRA), Nutrition, Metabolism and Aquaculture Unit (UR1067), Saint-Pée-sur-Nivelle, France.
authors.forename: Vincent
authors.initials: V
authors.lastname: Véron
authors.affiliation: Institut National de la Recherche Agronomique (INRA), Nutrition, Metabolism and Aquaculture Unit (UR1067), Saint-Pée-sur-Nivelle, France.
authors.forename: Sandrine
authors.initials: S
authors.lastname: Skiba-Cassy
authors.affiliation: Institut National de la Recherche Agronomique (INRA), Nutrition, Metabolism and Aquaculture Unit (UR1067), Saint-Pée-sur-Nivelle, France.
authors.forename: Stéphane
authors.initials: S
authors.lastname: Panserat
mesh_terms: D000220:Adaptation, Biological / Q000235:genetics / Q000502:physiology*; D000824:Animal Nutritional Physiological Phenomena / Q000502:physiology*; D000818:Animals; D016000:Cluster Analysis; D019295:Computational Biology; D004040:Dietary Carbohydrates / Q000378:metabolism; D019143:Evolution, Molecular; D020440:Gene Duplication / Q000235:genetics / Q000502:physiology*; D020869:Gene Expression Profiling; D005943:Gluconeogenesis / Q000235:genetics / Q000502:physiology*; D017686:Oncorhynchus mykiss / Q000235:genetics* / Q000502:physiology*; D010802:Phylogeny
chemical_list: D004040:Dietary Carbohydrates
keywords: adaptation; carbohydrates; carnivorism; gene duplication; gluconeogenesis; trout