Multi-Atlas Segmentation for Abdominal Organs with Gaussian Mixture Models.
Abdominal organ segmentation with clinically acquired computed tomography (CT) is drawing increasing interest in the medical imaging community. Gaussian mixture models (GMM) have been extensively used through medical segmentation, most notably in the brain for cerebrospinal fluid/gray matter/white matter differentiation. Because abdominal CT exhibit strong localized intensity characteristics, GMM have recently been incorporated in multi-stage abdominal segmentation algorithms. In the context of variable abdominal anatomy and rich algorithms, it is difficult to assess the marginal contribution of GMM. Herein, we characterize the efficacy of ana posterioriframework that integrates GMM of organ-wise intensity likelihood with spatial priors from multiple target-specific registered labels. In our study, we first manually labeled 100 CT images. Then, we assigned 40 images to use as training data for constructing target-specific spatial priors and intensity likelihoods. The remaining 60 images were evaluated as test targets for segmenting 12 abdominal organs. The overlap between the true and the automatic segmentations was measured by Dice similarity coefficient (DSC). A median improvement of 145% was achieved by integrating the GMM intensity likelihood against the specific spatial prior. The proposed framework opens the opportunities for abdominal organ segmentation by efficiently using both the spatial and appearance information from the atlases, and creates a benchmark for large-scale automatic abdominal segmentation.
Biomedical Engineering, Vanderbilt University, Nashville, TN, USA 37235.
Ryan P
RP
Burke
Electrical Engineering, Vanderbilt University, Nashville, TN, USA 37235.
Zhoubing
Z
Xu
Computer Science, Vanderbilt University, Nashville, TN, USA 37235.
Christopher P
CP
Lee
General Surgery, Vanderbilt University, Nashville, TN, USA 37235.
Rebeccah B
RB
Baucom
General Surgery, Vanderbilt University, Nashville, TN, USA 37235.
Benjamin K
BK
Poulose
Radiology and Radiological Science, Vanderbilt University, Nashville, TN, USA 37235.
Richard G
RG
Abramson
Biomedical Engineering, Vanderbilt University, Nashville, TN, USA 37235 ; Electrical Engineering, Vanderbilt University, Nashville, TN, USA 37235 ; Computer Science, Vanderbilt University, Nashville, TN, USA 37235 ; Radiology and Radiological Science, Vanderbilt University, Nashville, TN, USA 37235.
Bennett A
BA
Landman
Abdomen; Computed Tomography; Gaussian Mixture Model; Multi-Atlas Segmentation