[Analysis of SMN1 gene partial deletion of spinal muscular atrophy based on MLPA].
OBJECTIVE
To explore the diversity of mutations in survival motor neuron gene 1 (SMN1) by analyzing seven cases of partial deletion of SMN1 gene.


METHODS
Seven patients suspected spinal muscular atrophy (SMA) were recruited from 2011 to 2013. Multiplex ligation-dependent probe amplification (MLPA) for genetic testing of SMA was based on the commercially available SALSA MLPA kit P021-A2. Then the data were analyzed by the software Coffalyser.Negative control samples were chosen with two copies of SMN1 and SMN2. Positive control samples were chosen with zero copies of SMN1 and two copies of SMN2. According to the product description (www.mlpa.com): for exon 7 and 8 of SMN1 and SMN2: a ratio of <0.7 indicates 1 copy, a ratio of 0.7-1.3 2 copies, a ratio of 1.3-1.7 3 copies and a ratio of 1.7-2.3 4 copies. For exon 1, 4, 6, 8 of SMN gene (SMN1+SMN2): a ratio <0.4 indicates 1 copy, a ratio of 4.0-0.6 2 copies, a ratio of 0.7-0.9 3 copies and a ratio of 0.9-1.1 4 copies. All samples were analyzed in duplicate.


RESULTS
Using MLPA for clinical diagnostics, two types of partial deletions of SMN1were identified in 7 patients.Since exon 8 is not translated and has no effect on the function of SMN protein, exons 1, 4, 6, 7 were targeted.One had an isolated deletion of exon 7 while the other ones were caused by the deletions of exon 1, 4 and 7. These mutations were not detected by conventional diagnostic methods. Both types of partial deletions of SMN1 gene contained a deletion of exon 7.


CONCLUSIONS
Two types of partial deletions of SMN1 gene indicate that the structure of SMN gene is unstable leading to a variety of mutation forms. But the major cause of SMA lies in a deletion of exon 7 of SMN1 gene.
Department of Medical Genetics, Capital Institute of Pediatrics, Beijing 100020, China.
Wenhui
W
Zhang
Department of Medical Genetics, Capital Institute of Pediatrics, Beijing 100020, China.
Yanyan
Y
Cao
Department of Medical Genetics, Capital Institute of Pediatrics, Beijing 100020, China. Email: songf_558@263.net.
Fang
F
Song
Department of Medical Genetics, Capital Institute of Pediatrics, Beijing 100020, China.
Yujin
Y
Qu
Department of Medical Genetics, Capital Institute of Pediatrics, Beijing 100020, China.
Jinli
J
Bai
Department of Medical Genetics, Capital Institute of Pediatrics, Beijing 100020, China.
Yuwei
Y
Jin
Department of Medical Genetics, Capital Institute of Pediatrics, Beijing 100020, China.
Hong
H
Wang
D005091:Exons; D006801:Humans; D009046:Motor Neurons; D060885:Multiplex Polymerase Chain Reaction; D009134:Muscular Atrophy, Spinal; D009154:Mutation; D017384:Sequence Deletion; D055533:Survival of Motor Neuron 1 Protein
C526471:SMN1 protein, human; D055533:Survival of Motor Neuron 1 Protein