kSNP3.0: SNP detection and phylogenetic analysis of genomes without genome alignment or reference genome.
We announce the release of kSNP3.0, a program for SNP identification and phylogenetic analysis without genome alignment or the requirement for reference genomes. kSNP3.0 is a significantly improved version of kSNP v2.


METHODS
kSNP3.0 is implemented as a package of stand-alone executables for Linux and Mac OS X under the open-source BSD license. The executable packages, source code and a full User Guide are freely available at https://sourceforge.net/projects/ksnp/files/


BACKGROUND
barryghall@gmail.com.
Computations/Global Security, Lawrence Livermore National Laboratory, Livermore, CA 94550, USA and.
Shea N
SN
Gardner
Computations/Global Security, Lawrence Livermore National Laboratory, Livermore, CA 94550, USA and.
Tom
T
Slezak
Bellingham Research Institute, Bellingham, WA 98229, USA.
Barry G
BG
Hall
D019295:Computational Biology / Q000379:methods*; D030561:Databases, Nucleic Acid; D004926:Escherichia coli / Q000145:classification / Q000235:genetics*; D016680:Genome, Bacterial; D058977:Molecular Sequence Annotation; D010802:Phylogeny; D020641:Polymorphism, Single Nucleotide / Q000235:genetics*; D017422:Sequence Analysis, DNA / Q000379:methods*; D012984:Software