Spectroscopic studies of kinetically trapped conformations in the gas phase: the case of triply protonated bradykinin.
Understanding the relation between the gas-phase structure of biological molecules and their solution-phase structure is important when attempting to use gas-phase techniques to address biologically relevant questions. Directly after electrospray ionization, molecules can be kinetically trapped in a state that retains some "memory" of its conformation in solution and is separated from the lowest-energy gas-phase structure by barriers on the potential energy surface. In order to identify and characterize kinetically trapped structures, we have explored the conformational space of triply protonated bradykinin in the gas phase by combining field-asymmetric ion mobility spectrometry (FAIMS) with cold ion spectroscopy. We isolate three distinct conformational families and characterize them by recording their UV-photofragment spectra and vibrational spectra. Annealing of the initial conformational distribution produced by electrospray reveals that one of the conformational families is kinetically trapped, while two others are stable, gas-phase structures. We compare our results to previously published results obtained using drift-tube ion mobility spectrometry (IMS) and propose a correspondence between the conformational families separated by FAIMS and those by IMS.
Laboratoire de Chimie Physique Moléculaire, École Polytechnique Fédérale de Lausanne, EPFL SB ISIC LCPM, Station 6, CH-1015 Lausanne, Switzerland. liudmila.voronina@epfl.ch.
Liudmila
L
Voronina
Thomas R
TR
Rizzo
D001920:Bradykinin / Q000737:chemistry*; D005740:Gases / Q000737:chemistry; D007477:Ions / Q000737:chemistry; D007700:Kinetics; D013058:Mass Spectrometry; D017433:Protein Structure, Secondary; D011522:Protons; D013055:Spectrophotometry, Infrared; D014466:Ultraviolet Rays
D005740:Gases; D007477:Ions; D011522:Protons; D001920:Bradykinin