title: Development of a real-time reverse transcription loop-mediated isothermal amplification method for the rapid detection of porcine epidemic diarrhea virus.
abstract: BACKGROUND
  Porcine epidemic diarrhea (PED) is an acute and highly contagious enteric disease characterized by severe enteritis, vomiting and watery diarrhea in swine. Recently, the outbreak of the epidemic disease has been a serious problem in swine industry. The objective of this study is to develop a rapid, sensitive, and real-time reverse transcription loop-mediated isothermal amplification (RT-LAMP) method for the detection of porcine epidemic diarrhea virus (PEDV) in less equipped laboratories.
  
  
  RESULTS
  The optimal reaction condition of the current real-time RT-LAMP for PEDV was 62 °C for 45 min. It was capable of detecting PEDV from clinical samples and differentiating PEDV from several related porcine viruses, while it did not require additional expensive equipment. The minimum detection limit of the real-time RT-LAMP assay was 0.07PFU per reaction for PEDV RNA, making this assay approximately 100-fold more sensitive than that of one-step RT-PCR. By screening a panel of clinical specimens, the results showed that this method presented a similar sensitivity with real-time RT-PCR and was somewhat sensitive than one-step RT-PCR in detection of clinical samples.
  
  
  CONCLUSIONS
  In this study, we have developed a new real-time RT-LAMP method, which is rapid, sensitive and efficient to detect PEDV.This method holds great promises not only in laboratory detection and discrimination of PEDV but also in large scale field and clinical studies.
authors.affiliation: College of Veterinary Medicine, Northeast Agricultural University, No.59, Mucai street, Xiangfan District, Harbin, 150030, China. yuxuewu1@163.com.|Animal Epidemic Diseases Control and Prevention Center of Liaoning Province, Shenyang, China. yuxuewu1@163.com.
authors.forename: Xuewu
authors.initials: X
authors.lastname: Yu
authors.affiliation: College of Veterinary Medicine, Northeast Agricultural University, No.59, Mucai street, Xiangfan District, Harbin, 150030, China. hsyshilin@126.com.|Animal Epidemic Diseases Control and Prevention Center of Liaoning Province, Shenyang, China. hsyshilin@126.com.
authors.forename: Lin
authors.initials: L
authors.lastname: Shi
authors.affiliation: College of Veterinary Medicine, Northeast Agricultural University, No.59, Mucai street, Xiangfan District, Harbin, 150030, China. 66549670@qq.com.
authors.forename: Xiaoping
authors.initials: X
authors.lastname: Lv
authors.affiliation: Animal Epidemic Diseases Control and Prevention Center of Liaoning Province, Shenyang, China. yaowei1201@hotmail.com.
authors.forename: Wei
authors.initials: W
authors.lastname: Yao
authors.affiliation: China Institute of Veterinary Drugs Control, Beijing, China. 71431736@qq.com.
authors.forename: Minghui
authors.initials: M
authors.lastname: Cao
authors.affiliation: Animal Epidemic Diseases Control and Prevention Center of Dalian city, Dalian, China. 69207920@qq.com.
authors.forename: Hanxun
authors.initials: H
authors.lastname: Yu
authors.affiliation: Animal Influenza Laboratory of the Ministry of Agriculture and State Key Laboratory of Veterinary Biotechnology, Harbin Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Harbin, China. wxr@hvri.ac.cn.
authors.forename: Xiurong
authors.initials: X
authors.lastname: Wang
authors.affiliation: College of Veterinary Medicine, Northeast Agricultural University, No.59, Mucai street, Xiangfan District, Harbin, 150030, China. zhengshiminbl@sohu.com.
authors.forename: Shimin
authors.initials: S
authors.lastname: Zheng
mesh_terms: D000818:Animals; D018352:Coronavirus Infections / Q000175:diagnosis / Q000662:veterinary* / Q000821:virology; D021141:Nucleic Acid Amplification Techniques / Q000379:methods*; D053485:Porcine epidemic diarrhea virus / Q000302:isolation & purification*; D048348:Reverse Transcription; D012680:Sensitivity and Specificity; D013552:Swine; D013553:Swine Diseases / Q000175:diagnosis* / Q000821:virology; D013696:Temperature; D013997:Time Factors