title: Quantitative proteomic analysis of cabernet sauvignon grape cells exposed to thermal stresses reveals alterations in sugar and phenylpropanoid metabolism.
abstract: Grapes (Vitis vinifera) are a valuable fruit crop and wine production is a major industry. Global warming and expanded range of cultivation will expose grapes to more temperature stresses in future. Our study investigated protein level responses to abiotic stresses, with particular reference to proteomic changes induced by the impact of four different temperature stress regimes, including both hot and cold temperatures, on cultured grape cells. Cabernet Sauvignon cell suspension cultures grown at 26°C were subjected to 14 h of exposure to 34 and 42°C for heat stress, and 18 and 10°C for cold stress. Cells from the five temperatures were harvested in biological triplicates and label-free quantitative shotgun proteomic analysis was performed. A total of 2042 non-redundant proteins were identified from the five temperature points. Fifty-five proteins were only detected in extreme heat stress conditions (42°C) and 53 proteins were only detected at extreme cold stress conditions (10°C). Gene Ontology (GO) annotations of differentially expressed proteins provided insights into the metabolic pathways that are involved in temperature stress in grape cells. Sugar metabolism displayed switching between alternative and classical pathways during temperature stresses. Additionally, nine proteins involved in the phenylpropanoid pathway were greatly increased in abundance at extreme cold stress, and were thus found to be cold-responsive proteins. All MS data have been deposited in the ProteomeXchange with identifier PXD000977 (http://proteomecentral.proteomexchange.org/dataset/PXD000977).
authors.affiliation: Department of Chemistry and Biomolecular Sciences, Macquarie University, North Ryde, Australia.
authors.forename: Iniga S
authors.initials: IS
authors.lastname: George
authors.affiliation: Australian Proteome Analysis Facility (APAF), Macquarie University, North Ryde, Australia.
authors.forename: Dana
authors.initials: D
authors.lastname: Pascovici
authors.affiliation: Department of Chemistry and Biomolecular Sciences, Macquarie University, North Ryde, Australia.
authors.forename: Mehdi
authors.initials: M
authors.lastname: Mirzaei
authors.affiliation: Department of Chemistry and Biomolecular Sciences, Macquarie University, North Ryde, Australia.
authors.forename: Paul A
authors.initials: PA
authors.lastname: Haynes
mesh_terms: D050260:Carbohydrate Metabolism; D002478:Cells, Cultured; D057773:Cold Shock Proteins and Peptides / Q000378:metabolism; D058639:Cold-Shock Response; D005419:Flavonoids / Q000378:metabolism; D063990:Gene Ontology; D018869:Heat-Shock Response; D053858:Metabolic Networks and Pathways; D059828:Plant Cells / Q000378:metabolism; D010940:Plant Proteins / Q000032:analysis / Q000378:metabolism*; D020005:Propanols / Q000737:chemistry / Q000378:metabolism; D040901:Proteomics / Q000379:methods*; D013312:Stress, Physiological; D013696:Temperature; D027843:Vitis / Q000166:cytology / Q000378:metabolism / Q000502:physiology*
chemical_list: D057773:Cold Shock Proteins and Peptides; D005419:Flavonoids; D010940:Plant Proteins; D020005:Propanols
keywords: Abiotic stress; Grape; Plant proteomics; Shotgun proteomics; Temperature stress; Vitis vinifera