title: Associations between genetic variants in the promoter region of the insulin-like growth factor-1 (IGF1) gene and blood serum IGF1 concentration in Hanwoo cattle.
abstract: In this study, we investigated the associations between genetic variants in the promoter region of the insulin-like growth factor-1 (IGF1) gene and blood serum IGF1 concentration in Hanwoo cattle. Polymerase chain reaction primers were based on GenBank accession No. AF404761 and amplified approximately 533-bp segments. Newly identified sequences were submitted to GenBank (accession No. DQ267493). Sequence analysis revealed that genetic variants were located at a nucleotide position 323 for the nucleotide substitution C/A that was first reported in this study and positions 326-349 for a repeat motif (CA10-11). The allele frequencies of g.323C>A were 0.264 (C) and 0.736 (A) without significant deviation from Hardy-Weinberg equilibrium. Frequencies of the repeat motif CA(10) and CA(11) were 0.604 and 0.396, respectively. Statistical analysis revealed that the genetic variation g.323C>A was significantly associated with blood serum IGF1 concentrations with significant additive genetic effects, whereas no associations were found for the repeat motif. IGF1 concentrations were positively (r = 0.453) and negatively (r = -0.445) correlated with weights in the growing stages (16-21 months) and late fattening stages (22-30 months), respectively. The results of the present study and future genotypic data for Hanwoo beef cattle based on the robust genetic variation of IGF1 will provide critical information for genetic improvement and will have a large impact on commercial markets.
authors.affiliation: Animal Genomics and Bioinformatics Division, National Institute of Animal Science, Suwon, Korea chung133@korea.kr.
authors.forename: H Y
authors.initials: HY
authors.lastname: Chung
authors.affiliation: Animal Genomics and Bioinformatics Division, National Institute of Animal Science, Suwon, Korea.
authors.forename: Y J
authors.initials: YJ
authors.lastname: Choi
authors.affiliation: Animal Genomics and Bioinformatics Division, National Institute of Animal Science, Suwon, Korea.
authors.forename: H N
authors.initials: HN
authors.lastname: Park
authors.affiliation: Department of Animal Sciences, Ohio State University, Columbus, OH, USA.
authors.forename: M E
authors.initials: ME
authors.lastname: Davis
mesh_terms: D000818:Animals; D001483:Base Sequence; D002417:Cattle / Q000097:blood* / Q000235:genetics*; D056726:Genetic Association Studies / Q000662:veterinary; D014644:Genetic Variation; D007334:Insulin-Like Growth Factor I / Q000235:genetics* / Q000378:metabolism*; D008297:Male; D008969:Molecular Sequence Data; D020641:Polymorphism, Single Nucleotide; D011401:Promoter Regions, Genetic; D017422:Sequence Analysis, DNA
chemical_list: D007334:Insulin-Like Growth Factor I