title: Anion complexation with cyanobenzoyl substituted first and second generation tripodal amide receptors: crystal structure and solution studies.
abstract: Anion complexation properties of two new tripodal amide receptors have been extensively studied here. Two tripodal receptors have been synthesized from the reaction of cyanobenzoyl acid chloride with two tri-amine building blocks such as (i) tris(2-aminoethyl)amine and (ii) tris(2-(4-aminophenoxy)ethyl)amine, which resulted in the first (L1) and second (L2) generation tripodal amides respectively. A detailed comparison of their coordination behavior with anions is also described by crystallographic and solution state experiments. The crystal structure demonstrates various types of spatial orientations of tripodal arms in two receptors and concomitantly interacts with anions distinctively. Intramolecular H-bonding between amide N–H and CO prevents opening of the receptor cavity in the crystal, which leads to a locked conformation of L1 having C(3v) symmetry and makes amide hydrogen unavailable for the anion which results in side cleft anion binding. However, in L2 we conveniently shift the anion binding sites to a distant position which increases cavity size as well as rules out any intramolecular H-bonding between amide N–H and CO. The crystal structure shows a different orientation of the arms in L2; it adopts a quasi-planar arrangement with C(2v) symmetry. In the crystal structure two arms are pointed in the same direction and while extending the contact the third arm is H-bonded with the apical N-atom through a –CN group, making a pseudo capsular cavity where the anion interacts. Most importantly spatial reorientation of the receptor L2 from a C(2v) symmetry to a folded conformation with a C(3v) symmetry was observed only in the presence of an octahedral SiF6(2-) anion and forms a sandwich type complex. Receptors L1 and L2 are explored for their solution state anion binding abilities. The substantial changes in chemical shifts were observed for the amide (-NH) and aromatic hydrogen (-CH) (especially for F(-)), indicating the role of these hydrogens in anion binding. The anion interacts with receptor L2 more strongly than L1 as confirmed by 1H NMR titration upon monitoring the -NH signal.
authors.affiliation: Department of Chemistry, Indian Institute of Technology Guwahati, Assam 781039, India. gdas@iitg.ernet.in.
authors.forename: Md Najbul
authors.initials: MN
authors.lastname: Hoque
authors.forename: Abhijit
authors.initials: A
authors.lastname: Gogoi
authors.forename: Gopal
authors.initials: G
authors.lastname: Das
mesh_terms: D000577:Amides / Q000737:chemistry; D000588:Amines / Q000737:chemistry*; D000838:Anions; D001565:Benzoates / Q000737:chemistry*; D002712:Chlorides / Q000737:chemistry*; D003460:Crystallization; D018360:Crystallography, X-Ray; D005021:Ethylamines / Q000737:chemistry*; D005029:Ethylenediamines / Q000737:chemistry*; D006859:Hydrogen / Q000737:chemistry; D006860:Hydrogen Bonding; D009682:Magnetic Resonance Spectroscopy; D008958:Models, Molecular; D008968:Molecular Conformation; D009570:Nitriles / Q000737:chemistry*; D012996:Solutions; D013055:Spectrophotometry, Infrared; D017550:Spectroscopy, Fourier Transform Infrared
chemical_list: D000577:Amides; D000588:Amines; D000838:Anions; D001565:Benzoates; D002712:Chlorides; D005021:Ethylamines; D005029:Ethylenediamines; D009570:Nitriles; D012996:Solutions; C000608310:tris(2-(4-aminophenoxy)ethyl)amine; C099539:tris(2-aminoethyl)amine; D006859:Hydrogen; C013409:benzoyl chloride