title: Nitrate denitrification with nitrite or nitrous oxide as intermediate products: Stoichiometry, kinetics and dynamics of stable isotope signatures.
abstract: A kinetic analysis of nitrate denitrification by a single or two species of denitrifying bacteria with glucose or ethanol as a carbon source and nitrite or nitrous oxide as intermediate products was performed using experimental data published earlier (Menyailo and Hungate, 2006; Vidal-Gavilan et al., 2013). Modified Monod kinetics was used in the dynamic biological model. The special equations were added to the common dynamic biological model to describe how isotopic fractionation between N species changes. In contrast to the generally assumed first-order kinetics, in this paper, the traditional Rayleigh equation describing stable nitrogen and oxygen isotope fractionation in nitrate was derived from the dynamic isotopic equations for any type of kinetics. In accordance with the model, in Vidal-Gavilan's experiments, the maximum specific rate of nitrate reduction was proved to be less for ethanol compared to glucose. Conversely, the maximum specific rate of nitrite reduction was proved to be much less for glucose compared to ethanol. Thus, the intermediate nitrite concentration was negligible for the ethanol experiment, while it was significant for the glucose experiment. In Menyailo's and Hungate's experiments, the low value of maximum specific rate of nitrous oxide reduction gives high intermediate value of nitrous oxide concentration. The model showed that the dynamics of nitrogen and oxygen isotope signatures are responding to the biological dynamics. Two microbial species instead of single denitrifying bacteria are proved to be more adequate to describe the total process of nitrate denitrification to dinitrogen.
authors.affiliation: Water Problems Institute, Russian Academy of Sciences, 3 Gubkina str., Moscow 119333, Russia. Electronic address: vavilin@aqua.laser.ru.
authors.forename: V A
authors.initials: VA
authors.lastname: Vavilin
authors.affiliation: Water Problems Institute, Russian Academy of Sciences, 3 Gubkina str., Moscow 119333, Russia.
authors.forename: S V
authors.initials: SV
authors.lastname: Rytov
mesh_terms: D001419:Bacteria / Q000378:metabolism; D058440:Denitrification; D007700:Kinetics; D009566:Nitrates / Q000737:chemistry / Q000378:metabolism*; D009573:Nitrites / Q000737:chemistry / Q000378:metabolism*; D009587:Nitrogen Isotopes / Q000737:chemistry; D009609:Nitrous Oxide / Q000737:chemistry / Q000378:metabolism*; D010103:Oxygen Isotopes / Q000737:chemistry
chemical_list: D009566:Nitrates; D009573:Nitrites; D009587:Nitrogen Isotopes; D010103:Oxygen Isotopes; D009609:Nitrous Oxide
keywords: Biological dynamics; Denitrification; Kinetic isotope fractionation; Nitrate; Nitrite; Nitrous oxide