title: Cellulose and hemicellulose-degrading enzymes in Fusarium commune transcriptome and functional characterization of three identified xylanases.
abstract: Specific enzymes from plant-pathogenic microbes demonstrate high effectiveness for natural lignocellulosic biomass degradation and utilization. The secreted lignocellulolytic enzymes of Fusarium species have not been investigated comprehensively, however. In this study we compared cellulose and hemicellulose-degrading enzymes of classical fungal enzyme producers with those of Fusarium species. The results indicated that Fusarium species are robust cellulose and hemicellulose degraders. Wheat bran, carboxymethylcellulose and xylan-based growth media induced a broad spectrum of lignocellulolytic enzymes in Fusarium commune. Prediction of the cellulose and hemicellulose-degrading enzymes in the F. commune transcriptome using peptide pattern recognition revealed 147 genes encoding glycoside hydrolases and six genes encoding lytic polysaccharide monooxygenases (AA9 and AA11), including all relevant cellulose decomposing enzymes (GH3, GH5, GH6, GH7, GH9, GH45 and AA9), and abundant hemicellulases. We further applied peptide pattern recognition to reveal nine and seven subfamilies of GH10 and GH11 family enzymes, respectively. The uncharacterized XYL10A, XYL10B and XYL11 enzymes of F. commune were classified, respectively, into GH10 subfamily 1, subfamily 3 and GH11 subfamily 1. These xylanases were successfully expressed in the PichiaPink™ system with the following properties: the purified recombinant XYL10A had interesting high specific activity; XYL10B was active at alkaline conditions with both endo-1,4-β-d-xylanase and β-xylosidase activities; and XYL11 was a true xylanase characterized by high substrate specificity. These results indicate that F. commune with genetic modification is a promising source of enzymes for the decomposition of lignocellulosic biomass.
authors.affiliation: Section for Sustainable Biotechnology, Department of Chemistry and Bioscience, Aalborg University Copenhagen, 2450 Copenhagen SV, Denmark. Electronic address: huyu@bio.aau.dk.
authors.forename: Yuhong
authors.initials: Y
authors.lastname: Huang
authors.affiliation: Section for Sustainable Biotechnology, Department of Chemistry and Bioscience, Aalborg University Copenhagen, 2450 Copenhagen SV, Denmark; Barentzymes A/S, A.C. Meyers Vænge 15, 2450 Copenhagen SV, Denmark. Electronic address: pkb@bio.aau.dk.
authors.forename: Peter Kamp
authors.initials: PK
authors.lastname: Busk
authors.affiliation: Section for Sustainable Biotechnology, Department of Chemistry and Bioscience, Aalborg University Copenhagen, 2450 Copenhagen SV, Denmark; Barentzymes A/S, A.C. Meyers Vænge 15, 2450 Copenhagen SV, Denmark. Electronic address: lla@adm.aau.dk.
authors.forename: Lene
authors.initials: L
authors.lastname: Lange
mesh_terms: D002482:Cellulose / Q000378:metabolism*; D043364:Endo-1,4-beta Xylanases / Q000145:classification / Q000235:genetics* / Q000302:isolation & purification / Q000378:metabolism; D005656:Fungal Proteins / Q000145:classification / Q000235:genetics* / Q000302:isolation & purification / Q000378:metabolism; D005658:Fungi / Q000201:enzymology / Q000235:genetics; D005670:Fusarium / Q000201:enzymology* / Q000235:genetics; D005800:Genes, Fungal; D006026:Glycoside Hydrolases / Q000235:genetics / Q000378:metabolism; D008031:Lignin / Q000378:metabolism; D006899:Mixed Function Oxygenases / Q000235:genetics / Q000378:metabolism; D008958:Models, Molecular; D005810:Multigene Family; D010843:Pichia / Q000378:metabolism; D011134:Polysaccharides / Q000378:metabolism*; D011487:Protein Conformation; D011993:Recombinant Fusion Proteins / Q000378:metabolism; D013045:Species Specificity; D013379:Substrate Specificity; D059467:Transcriptome
chemical_list: D005656:Fungal Proteins; D011134:Polysaccharides; D011993:Recombinant Fusion Proteins; C036909:lignocellulose; C007916:hemicellulose; D002482:Cellulose; D008031:Lignin; D006899:Mixed Function Oxygenases; D006026:Glycoside Hydrolases; D043364:Endo-1,4-beta Xylanases
keywords: Fusarium commune; Glycoside hydrolase; Peptide pattern recognition; Pichia pastoris; Transcriptome; Xylanase