title: Sterol Composition and Biosynthetic Genes of Vitrella brassicaformis, a Recently Discovered Chromerid: Comparison to Chromera velia and Phylogenetic Relationship with Apicomplexan Parasites.
abstract: Vitrella brassicaformis is the second discovered species in the Chromerida, and first in the family Vitrellaceae. Chromera velia, the first discovered species, forms an independent photosynthetic lineage with V. brassicaformis, and both are closely related to peridinin-containing dinoflagellates and nonphotosynthetic apicomplexans; both also show phylogenetic closeness with red algal plastids. We have utilized gas chromatography/mass spectrometry to identify two free sterols, 24-ethylcholest-5-en-3β-ol, and a minor unknown sterol which appeared to be a C(28:4) compound. We have also used RNA Seq analysis to identify seven genes found in the nonmevalonate/methylerythritol pathway (MEP) for sterol biosynthesis. Subsequent genome analysis of V. brassicaformis showed the presence of two mevalonate (MVA) pathway genes, though the genes were not observed in the transcriptome analysis. Transcripts from four genes (dxr, ispf, ispd, and idi) were selected and translated into proteins to study the phylogenetic relationship of sterol biosynthesis in V. brassicaformis and C. velia to other groups of algae and apicomplexans. On the basis of our genomic and transcriptomic analyses, we hypothesize that the MEP pathway was the primary pathway that apicomplexans used for sterol biosynthesis before they lost their sterol biosynthesis ability, although contribution of the MVA pathway cannot be discounted.
authors.affiliation: Department of Biology, Middle Tennessee State University, PO Box 60, Murfreesboro, Tennessee, 37132.
authors.forename: Manoj
authors.initials: M
authors.lastname: Khadka
authors.affiliation: Department of Biology, Middle Tennessee State University, PO Box 60, Murfreesboro, Tennessee, 37132.
authors.forename: Mohamed
authors.initials: M
authors.lastname: Salem
authors.affiliation: Department of Biology, Middle Tennessee State University, PO Box 60, Murfreesboro, Tennessee, 37132.|Ecology and Evolution Group, Middle Tennessee State University, PO Box 60, Murfreesboro, Tennessee, 37132.
authors.forename: Jeffrey D
authors.initials: JD
authors.lastname: Leblond
mesh_terms: D056893:Alveolata / Q000145:classification / Q000235:genetics* / Q000378:metabolism*; D000818:Animals; D004141:Dinoflagellida / Q000235:genetics; D019143:Evolution, Molecular; D020869:Gene Expression Profiling; D045782:Hemiterpenes / Q000378:metabolism; D007535:Isomerases / Q000235:genetics / Q000378:metabolism; D013058:Mass Spectrometry; D008780:Methyltransferases / Q000235:genetics / Q000378:metabolism; D009943:Organophosphorus Compounds / Q000378:metabolism; D010788:Photosynthesis; D010802:Phylogeny; D018087:Plastids / Q000378:metabolism; D000461:Rhodophyta / Q000235:genetics; D017423:Sequence Analysis, RNA; D013261:Sterols / Q000032:analysis / Q000096:biosynthesis*
chemical_list: D045782:Hemiterpenes; D009943:Organophosphorus Compounds; D013261:Sterols; C004809:isopentenyl pyrophosphate; D008780:Methyltransferases; D007535:Isomerases
keywords: Chromerida; dinoflagellate; mevalonate; phylogeny; red algae