title: Metabolic potential of fatty acid oxidation and anaerobic respiration by abundant members of Thaumarchaeota and Thermoplasmata in deep anoxic peat.
abstract: To probe the metabolic potential of abundant Archaea in boreal peats, we reconstructed two near-complete archaeal genomes, affiliated with Thaumarchaeota group 1.1c (bin Fn1, 8% abundance), which was a genomically unrepresented group, and Thermoplasmata (bin Bg1, 26% abundance), from metagenomic data acquired from deep anoxic peat layers. Each of the near-complete genomes encodes the potential to degrade long-chain fatty acids (LCFA) via β-oxidation. Fn1 has the potential to oxidize LCFA either by syntrophic interaction with methanogens or by coupling oxidation with anaerobic respiration using fumarate as a terminal electron acceptor (TEA). Fn1 is the first Thaumarchaeota genome without an identifiable carbon fixation pathway, indicating that this mesophilic phylum encompasses more diverse metabolisms than previously thought. Furthermore, we report genetic evidence suggestive of sulfite and/or organosulfonate reduction by Thermoplasmata Bg1. In deep peat, inorganic TEAs are often depleted to extremely low levels, yet the anaerobic respiration predicted for two abundant archaeal members suggests organic electron acceptors such as fumarate and organosulfonate (enriched in humic substances) may be important for respiration and C mineralization in peatlands.
authors.affiliation: School of Biology, Georgia Institute of Technology, Atlanta, GA, USA.
authors.forename: Xueju
authors.initials: X
authors.lastname: Lin
authors.affiliation: Department of Ecology and Evolution, University of Chicago, Chicago, IL, USA.|Institute for Genomics and Systems Biology, Biosciences Division,Argonne National Laboratory, Lemont, IL, USA.
authors.forename: Kim M
authors.initials: KM
authors.lastname: Handley
authors.affiliation: Department of Ecology and Evolution, University of Chicago, Chicago, IL, USA.|Institute for Genomics and Systems Biology, Biosciences Division,Argonne National Laboratory, Lemont, IL, USA.|Marine Biological Laboratory, Woods Hole, MA, USA.|College of Environmental and Resource Sciences, Zhejiang University, Hangzhou, China.
authors.forename: Jack A
authors.initials: JA
authors.lastname: Gilbert
authors.affiliation: School of Biology, Georgia Institute of Technology, Atlanta, GA, USA.
authors.forename: Joel E
authors.initials: JE
authors.lastname: Kostka
mesh_terms: D000693:Anaerobiosis; D001105:Archaea / Q000145:classification / Q000235:genetics / Q000302:isolation & purification / Q000378:metabolism*; D057486:Carbon Cycle / Q000235:genetics; D019605:Euryarchaeota / Q000145:classification / Q000235:genetics / Q000302:isolation & purification / Q000378:metabolism*; D005227:Fatty Acids / Q000378:metabolism*; D056186:Metagenomics; D008969:Molecular Sequence Data; D010084:Oxidation-Reduction; D010802:Phylogeny; D012987:Soil / Q000737:chemistry; D012988:Soil Microbiology
chemical_list: D005227:Fatty Acids; D012987:Soil