title: Reveal genes functionally associated with ACADS by a network study.
abstract: Establishing a systematic network is aimed at finding essential human gene-gene/gene-disease pathway by means of network inter-connecting patterns and functional annotation analysis. In the present study, we have analyzed functional gene interactions of short-chain acyl-coenzyme A dehydrogenase gene (ACADS). ACADS plays a vital role in free fatty acid β-oxidation and regulates energy homeostasis. Modules of highly inter-connected genes in disease-specific ACADS network are derived by integrating gene function and protein interaction data. Among the 8 genes in ACADS web retrieved from both STRING and GeneMANIA, ACADS is effectively conjoined with 4 genes including HAHDA, HADHB, ECHS1 and ACAT1. The functional analysis is done via ontological briefing and candidate disease identification. We observed that the highly efficient-interlinked genes connected with ACADS are HAHDA, HADHB, ECHS1 and ACAT1. Interestingly, the ontological aspect of genes in the ACADS network reveals that ACADS, HAHDA and HADHB play equally vital roles in fatty acid metabolism. The gene ACAT1 together with ACADS indulges in ketone metabolism. Our computational gene web analysis also predicts potential candidate disease recognition, thus indicating the involvement of ACADS, HAHDA, HADHB, ECHS1 and ACAT1 not only with lipid metabolism but also with infant death syndrome, skeletal myopathy, acute hepatic encephalopathy, Reye-like syndrome, episodic ketosis, and metabolic acidosis. The current study presents a comprehensible layout of ACADS network, its functional strategies and candidate disease approach associated with ACADS network.
authors.affiliation: Molecular Medicine Research Center, West China Hospital, State Key Laboratory of Biotherapy, Sichuan University, Chengdu, China.
authors.forename: Yulong
authors.initials: Y
authors.lastname: Chen
authors.affiliation: Molecular Medicine Research Center, West China Hospital, State Key Laboratory of Biotherapy, Sichuan University, Chengdu, China. Electronic address: zhiguang.su@scu.edu.cn.
authors.forename: Zhiguang
authors.initials: Z
authors.lastname: Su
mesh_terms: D044926:Butyryl-CoA Dehydrogenase / Q000378:metabolism*; D019295:Computational Biology; D057225:Data Mining; D005227:Fatty Acids / Q000378:metabolism*; D053263:Gene Regulatory Networks; D006801:Humans
chemical_list: D005227:Fatty Acids; D044926:Butyryl-CoA Dehydrogenase
keywords: ACADS; Fatty acid β-oxidation; Gene networks; Lipid metabolism