title: RNA-seq-based transcriptome profiling reveals differential gene expression in the lungs of Sprague-Dawley rats during early-phase acute hypobaric hypoxia.
abstract: Individuals subjected to hypobaric hypoxia at high altitudes may exhibit differential physiological responses in terms of susceptibility and tolerance to the development of hypoxia-related disorders. We studied early-phase gene expression in the lungs of Sprague-Dawley rats exhibiting such differential physiological responses after exposure to acute hypobaric hypoxia for 1 h at a simulated altitude of 9144 m. RNA-seq transcriptome profiling of lung tissues revealed differential gene expression in tolerant and susceptible groups, subsequently validated by qRT-PCR for ten selected differentially expressed genes. The gene expression pattern indicated hypometabolism and negative regulation of vasoconstriction in all groups except susceptible rats, coupled with altered MAPK, p53 and JAK-STAT signaling. Upregulation of early-phase response genes including Dusp1 (dual specificity phosphatase), Cdkn1a (cyclin-dependent kinase inhibitor 1A), Txnip (thioredoxin-interacting protein), Rgs1 (regulator of G-protein signaling 1) and Rgs2 (regulator of G-protein signaling 2) in susceptible rats indicated a progression toward growth arrest and apoptosis. Enhanced expression of cell adhesion molecules, wound healing and repair bioprocesses was observed in tolerant males. Upregulated Kcnj15 (potassium inwardly rectifying channel subfamily j membrane 15) and Vsig4 (V-set and Ig domain containing 4) variants in tolerant females suggested adaptation to hypoxia possibly by fluid reabsorption to avoid edematous conditions and suppression of T cell proliferation to avoid acute lung inflammation. Our study might help in understanding the molecular-physiological mechanisms associated with progressive damage in the lung tissues of susceptible and tissue-protective measures in tolerant rats during acute hypobaric hypoxia.
authors.affiliation: University School of Biotechnology (USBT), Guru Gobind Singh Indraprastha University, Sector 16C, Dwarka, New Delhi, 110078, India.
authors.forename: Priyanka
authors.initials: P
authors.lastname: Sharma
authors.affiliation: Experimental Biology Division, Defence Institute of Physiology and Allied Sciences (DIPAS), Defence Research and Development Organisation (DRDO), Timarpur, Lucknow Road, New Delhi, India.
authors.forename: Anju
authors.initials: A
authors.lastname: Bansal
authors.affiliation: University School of Biotechnology (USBT), Guru Gobind Singh Indraprastha University, Sector 16C, Dwarka, New Delhi, 110078, India. prof.pcsharma@gmail.com.
authors.forename: Prakash Chand
authors.initials: PC
authors.lastname: Sharma
mesh_terms: D000818:Animals; D005260:Female; D020869:Gene Expression Profiling; D000860:Hypoxia / Q000235:genetics*; D008168:Lung / Q000378:metabolism*; D008297:Male; D011786:Quality Control; D051381:Rats; D017207:Rats, Sprague-Dawley; D017423:Sequence Analysis, RNA; D059467:Transcriptome
keywords: High altitude; Hypobaric hypoxia; RNA-seq; Sprague–Dawley; Transcriptome profiling; qRT-PCR