title: The complete chloroplast genome of Cinnamomum kanehirae Hayata (Lauraceae).
abstract: The complete chloroplast genome of Cinnamomum kanehirae (Hayata), the first to be completely sequenced of Lauraceae family, is presented in this study. The total genome size is 152,700 bp, with a typical circular structure including a pair of inverted repeats (IRa/b) of 20,107 bp of length separated by a large single-copy region (LSC) and a small single-copy region (SSC) of 93,642 bp and 18,844 bp of length, respectively. The overall GC content of the genome is 39.1%. The nucleotide sequence shows 91% identities with Liriodendron tulipifera in the Magnoliaceae. In total, 123 annotated genes consisted of 79 coding genes, eight rRNA genes, and 36 tRNA genes. Among all 79 coding genes, seven genes (rpoC1, atpF, rpl2, ndhB, ndhA, rps16, and rpl2) contain one intron, while two genes (ycf3 and clpP) contain two introns. The maximum likelihood phylogenetic analysis revealed that C. kanehirae chloroplast genome is closely related to Calycanthus fertilis within Laurales order.
authors.affiliation: a Silviculture Division , Taiwan Forestry Research Institute , Taipei , Taiwan.
authors.forename: Chia-Chen
authors.initials: CC
authors.lastname: Wu
authors.affiliation: a Silviculture Division , Taiwan Forestry Research Institute , Taipei , Taiwan.
authors.forename: Cheng-Kuen
authors.initials: CK
authors.lastname: Ho
authors.affiliation: a Silviculture Division , Taiwan Forestry Research Institute , Taipei , Taiwan.
authors.forename: Shu-Hwa
authors.initials: SH
authors.lastname: Chang
mesh_terms: D001482:Base Composition / Q000235:genetics; D019143:Evolution, Molecular; D054628:Genome, Chloroplast / Q000235:genetics*; D054629:Genome, Mitochondrial / Q000235:genetics*; D019770:Lauraceae / Q000145:classification / Q000235:genetics*; D010802:Phylogeny; D012335:RNA, Ribosomal / Q000235:genetics; D012343:RNA, Transfer / Q000235:genetics
chemical_list: D012335:RNA, Ribosomal; D012343:RNA, Transfer
keywords: Antrodia cinnamomea; Cinnamomum kanehirae; Lauraceae; chloroplast genome; next-generation sequence