title: Tools for visualization and analysis of molecular networks, pathways, and -omics data.
abstract: Biological pathways have become the standard way to represent the coordinated reactions and actions of a series of molecules in a cell. A series of interconnected pathways is referred to as a biological network, which denotes a more holistic view on the entanglement of cellular reactions. Biological pathways and networks are not only an appropriate approach to visualize molecular reactions. They have also become one leading method in -omics data analysis and visualization. Here, we review a set of pathway and network visualization and analysis methods and take a look at potential future developments in the field.
authors.affiliation: Max Planck Institute of Biochemistry, Research Group Computational Biology, Martinsried, Germany.
authors.forename: Jose M
authors.initials: JM
authors.lastname: Villaveces
authors.affiliation: Max Planck Institute of Biochemistry, Research Group Computational Biology, Martinsried, Germany.
authors.forename: Prasanna
authors.initials: P
authors.lastname: Koti
authors.affiliation: Max Planck Institute of Biochemistry, Research Group Computational Biology, Martinsried, Germany.
authors.forename: Bianca H
authors.initials: BH
authors.lastname: Habermann
keywords: biological networks; genes; organisms; protein-protein interactions; proteins; reactions; signaling