title: Investigation of the Verhaar scheme for predicting acute aquatic toxicity: improving predictions obtained from Toxtree ver. 2.6.
abstract: Assessment of the potential of compounds to cause harm to the aquatic environment is an integral part of the REACH legislation. To reduce the number of vertebrate and invertebrate animals required for this analysis alternative approaches have been promoted. Category formation and read-across have been applied widely to predict toxicity. A key approach to grouping for environmental toxicity is the Verhaar scheme which uses rules to classify compounds into one of four mechanistic categories. These categories provide a mechanistic basis for grouping and any further predictive modelling. A computational implementation of the Verhaar scheme is available in Toxtree v2.6. The work presented herein demonstrates how modifications to the implementation of Verhaar between version 1.5 and 2.6 of Toxtree have improved performance by reducing the number of incorrectly classified compounds. However, for the datasets used in this analysis, version 2.6 classifies more compounds as outside of the domain of the model. Further amendments to the classification rules have been implemented here using a post-processing filter encoded as a KNIME workflow. This results in fewer compounds being classified as outside of the model domain, further improving the predictivity of the scheme. The utility of the modification described herein is demonstrated through building quality, mechanism-specific Quantitative Structure Activity Relationship (QSAR) models for the compounds within specific mechanistic categories.
authors.affiliation: School of Pharmacy and Biomolecular Sciences, Liverpool John Moores University, Byrom Street, Liverpool L3 3AF, United Kingdom.
authors.forename: Claire M
authors.initials: CM
authors.lastname: Ellison
authors.affiliation: School of Pharmacy and Biomolecular Sciences, Liverpool John Moores University, Byrom Street, Liverpool L3 3AF, United Kingdom.
authors.forename: Judith C
authors.initials: JC
authors.lastname: Madden
authors.affiliation: School of Pharmacy and Biomolecular Sciences, Liverpool John Moores University, Byrom Street, Liverpool L3 3AF, United Kingdom.
authors.forename: Mark T D
authors.initials: MT
authors.lastname: Cronin
authors.affiliation: School of Pharmacy and Biomolecular Sciences, Liverpool John Moores University, Byrom Street, Liverpool L3 3AF, United Kingdom. Electronic address: s.j.enoch@ljmu.ac.uk.
authors.forename: Steven J
authors.initials: SJ
authors.lastname: Enoch
mesh_terms: D000818:Animals; D059001:Aquatic Organisms / Q000187:drug effects* / Q000254:growth & development; D003530:Cyprinidae / Q000254:growth & development; D005544:Forecasting; D015386:Hazardous Substances / Q000737:chemistry / Q000633:toxicity*; D008962:Models, Theoretical; D021281:Quantitative Structure-Activity Relationship; D013769:Tetrahymena pyriformis / Q000187:drug effects / Q000254:growth & development; D023382:Toxicity Tests, Acute; D014874:Water Pollutants, Chemical / Q000737:chemistry / Q000633:toxicity*
chemical_list: D015386:Hazardous Substances; D014874:Water Pollutants, Chemical
keywords: Aquatic toxicity; Category formation; QSAR; Toxtree; Verhaar