title: Automated quantification of the phagocytosis of Aspergillus fumigatus conidia by a novel image analysis algorithm.
abstract: Studying the pathobiology of the fungus Aspergillus fumigatus has gained a lot of attention in recent years. This is due to the fact that this fungus is a human pathogen that can cause severe diseases, like invasive pulmonary aspergillosis in immunocompromised patients. Because alveolar macrophages belong to the first line of defense against the fungus, here, we conduct an image-based study on the host-pathogen interaction between murine alveolar macrophages and A. fumigatus. This is achieved by an automated image analysis approach that uses a combination of thresholding, watershed segmentation and feature-based object classification. In contrast to previous approaches, our algorithm allows for the segmentation of individual macrophages in the images and this enables us to compute the distribution of phagocytosed and macrophage-adherent conidia over all macrophages. The novel automated image-based analysis provides access to all cell-cell interactions in the assay and thereby represents a framework that enables comprehensive computation of diverse characteristic parameters and comparative investigation for different strains. We here apply automated image analysis to confocal laser scanning microscopy images of the two wild-type strains ATCC 46645 and CEA10 of A. fumigatus and investigate the ability of macrophages to phagocytose the respective conidia. It is found that the CEA10 strain triggers a stronger response of the macrophages as revealed by a higher phagocytosis ratio and a larger portion of the macrophages being active in the phagocytosis process.
authors.affiliation: Applied Systems Biology, Leibniz Institute for Natural Product Research and Infection Biology - Hans Knöll Institute Jena, Germany ; Faculty of Biology and Pharmacy, Friedrich Schiller University Jena Jena, Germany.
authors.forename: Kaswara
authors.initials: K
authors.lastname: Kraibooj
authors.affiliation: Faculty of Biology and Pharmacy, Friedrich Schiller University Jena Jena, Germany ; Department of Molecular and Applied Microbiology, Leibniz Institute for Natural Product Research and Infection Biology - Hans Knöll Institute Jena, Germany.
authors.forename: Hanno
authors.initials: H
authors.lastname: Schoeler
authors.affiliation: Applied Systems Biology, Leibniz Institute for Natural Product Research and Infection Biology - Hans Knöll Institute Jena, Germany.
authors.forename: Carl-Magnus
authors.initials: CM
authors.lastname: Svensson
authors.affiliation: Faculty of Biology and Pharmacy, Friedrich Schiller University Jena Jena, Germany ; Department of Molecular and Applied Microbiology, Leibniz Institute for Natural Product Research and Infection Biology - Hans Knöll Institute Jena, Germany.
authors.forename: Axel A
authors.initials: AA
authors.lastname: Brakhage
authors.affiliation: Applied Systems Biology, Leibniz Institute for Natural Product Research and Infection Biology - Hans Knöll Institute Jena, Germany ; Faculty of Biology and Pharmacy, Friedrich Schiller University Jena Jena, Germany.
authors.forename: Marc Thilo
authors.initials: MT
authors.lastname: Figge
keywords: Aspergillus fumigatus; alveolar macrophages; automated image analysis; host-pathogen interaction; phagocytosis assay