title: Comparative metagenomics reveals microbial community differentiation in a biological heap leaching system.
abstract: The microbial community in a biological heap leaching (BHL) system is crucial for the decomposition of ores. However, the microbial community structure and functional differentiation in different parts of a biological heap leaching system are still unknown. In this study, metagenomic sequencing was used to fully illuminate the microbial community differentiation in the pregnant leach solution (PLS) and leaching heap (LH) of a BHL system. Long-read sequences (1.3 million) were obtained for the two samples, and the MG_RAST server was used to perform further analysis. The taxa analysis results indicated that the dominant genera of PLS is autotrophic bacterium Acidithiobacillus, but heterotrophic bacterium Acidiphilium is predominant in LH. Furthermore, functional annotation and hierarchical comparison with different reference samples showed that the abundant presence of genes was involved in transposition, DNA repair and heavy metal transport. The sequences related to transposase, which is important for the survival of the organism in the hostile environment, were both mainly classified into Acidiphilium for PLS and LH. These results indicated that not only autotrophic bacteria such as Acidithiobacillus, but also heterotrophic bacteria such as Acidiphilium, were essential participants in the bioleaching process. This new meta-view research will further facilitate the effective application of bioleaching.
authors.affiliation: School of Minerals Processing and Bioengineering, Central South University, Changsha, Hunan 410083, China; Key Laboratory of Biometallurgy of the Ministry of Education, Changsha, Hunan 410083, China.
authors.forename: Qi
authors.initials: Q
authors.lastname: Hu
authors.affiliation: School of Minerals Processing and Bioengineering, Central South University, Changsha, Hunan 410083, China; Key Laboratory of Biometallurgy of the Ministry of Education, Changsha, Hunan 410083, China.
authors.forename: Xue
authors.initials: X
authors.lastname: Guo
authors.affiliation: School of Minerals Processing and Bioengineering, Central South University, Changsha, Hunan 410083, China; Key Laboratory of Biometallurgy of the Ministry of Education, Changsha, Hunan 410083, China.
authors.forename: Yili
authors.initials: Y
authors.lastname: Liang
authors.affiliation: School of Minerals Processing and Bioengineering, Central South University, Changsha, Hunan 410083, China; Key Laboratory of Biometallurgy of the Ministry of Education, Changsha, Hunan 410083, China.
authors.forename: Xiaodong
authors.initials: X
authors.lastname: Hao
authors.affiliation: School of Minerals Processing and Bioengineering, Central South University, Changsha, Hunan 410083, China; Key Laboratory of Biometallurgy of the Ministry of Education, Changsha, Hunan 410083, China.
authors.forename: Liyuan
authors.initials: L
authors.lastname: Ma
authors.affiliation: School of Minerals Processing and Bioengineering, Central South University, Changsha, Hunan 410083, China; Key Laboratory of Biometallurgy of the Ministry of Education, Changsha, Hunan 410083, China.
authors.forename: Huaqun
authors.initials: H
authors.lastname: Yin
authors.affiliation: School of Minerals Processing and Bioengineering, Central South University, Changsha, Hunan 410083, China; Key Laboratory of Biometallurgy of the Ministry of Education, Changsha, Hunan 410083, China. Electronic address: xueduanliu@yahoo.com.
authors.forename: Xueduan
authors.initials: X
authors.lastname: Liu
mesh_terms: D041801:Acidiphilium / Q000235:genetics / Q000302:isolation & purification*; D042763:Acidithiobacillus / Q000235:genetics / Q000302:isolation & purification*; D003300:Copper / Q000378:metabolism; D004260:DNA Repair / Q000235:genetics; D005798:Genes, Bacterial; D059014:High-Throughput Nucleotide Sequencing; D056186:Metagenomics; D059013:Microbial Consortia / Q000235:genetics* / Q000502:physiology; D008906:Mining; D010802:Phylogeny
chemical_list: D003300:Copper
keywords: Biological heap leaching system; KEGG; MG-RAST server; Metagenomics; Microbial community