title: Complete genome sequence and SNPs of Raja pulchra (Rajiformes, Rajidae) mitochondria.
abstract: Mitochondrial genomes were sequenced from five Raja pulchra individuals, and single-nucleotide polymorphisms (SNPs) were identified by comparing previously announced sequences in this study. Total 117 SNPs were detected and they were present in 2 rRNA genes, 9 tRNA genes, 13 protein coding genes and non-coding region. One deleted polymorphic site, which was located in 16S rRNA gene, was observed in two individuals. Six polymorphic sites were non-synonymous SNPs, which were distributed in ND1, ND2, ATP6 and ND4 gene. Phylogenic analysis validated current taxa. The genome sequences of R. pulchra mitochondria could be comparable information for understanding species divergence and genomic variation among the populations.
authors.affiliation: a Department of Animal Life Science and.
authors.forename: Jae Yeon
authors.initials: JY
authors.lastname: Hwang
authors.affiliation: a Department of Animal Life Science and.
authors.forename: Gwi-Deuk
authors.initials: GD
authors.lastname: Jin
authors.affiliation: b Department of Animal Life System , Kangwon National University , Chuncheon , Republic of Korea .
authors.forename: Jongbin
authors.initials: J
authors.lastname: Park
authors.affiliation: c Department of Agricultural Biotechnology , Animal Biotechnology Major, Research Institute for Agriculture and Life Sciences, Seoul National University , Seoul , Republic of Korea .|d Institute of Green Bio Science and Technology, Seoul National University , Pyeongchang , Republic of Korea .
authors.forename: Heebal
authors.initials: H
authors.lastname: Kim
authors.affiliation: c Department of Agricultural Biotechnology , Animal Biotechnology Major, Research Institute for Agriculture and Life Sciences, Seoul National University , Seoul , Republic of Korea .|d Institute of Green Bio Science and Technology, Seoul National University , Pyeongchang , Republic of Korea .
authors.forename: Chang-Kyu
authors.initials: CK
authors.lastname: Lee
authors.affiliation: c Department of Agricultural Biotechnology , Animal Biotechnology Major, Research Institute for Agriculture and Life Sciences, Seoul National University , Seoul , Republic of Korea .|e C&K Genomics, Seoul National University Research Park , Seoul , Republic of Korea .
authors.forename: Woori
authors.initials: W
authors.lastname: Kwak
authors.affiliation: f Biotechnology Research Division , National Fisheries Research & Development Institute , Busan , Republic of Korea , and.
authors.forename: Bo-Hye
authors.initials: BH
authors.lastname: Nam
authors.affiliation: f Biotechnology Research Division , National Fisheries Research & Development Institute , Busan , Republic of Korea , and.
authors.forename: Cheul Min
authors.initials: CM
authors.lastname: An
authors.affiliation: f Biotechnology Research Division , National Fisheries Research & Development Institute , Busan , Republic of Korea , and.
authors.forename: Jung Youn
authors.initials: JY
authors.lastname: Park
authors.affiliation: b Department of Animal Life System , Kangwon National University , Chuncheon , Republic of Korea .
authors.forename: Kyu-Hyun
authors.initials: KH
authors.lastname: Park
authors.affiliation: g Graduate School of International Agricultural Technology/GBST, Seoul National University , Pyeongchang , Republic of Korea.
authors.forename: Chul-Sung
authors.initials: CS
authors.lastname: Huh
authors.affiliation: a Department of Animal Life Science and.
authors.forename: Eun Bae
authors.initials: EB
authors.lastname: Kim
mesh_terms: D000818:Animals; D001482:Base Composition; D005399:Fishes / Q000145:classification* / Q000235:genetics*; D050259:Genes, Mitochondrial; D059646:Genome Size; D054629:Genome, Mitochondrial; D016366:Open Reading Frames; D010802:Phylogeny; D020641:Polymorphism, Single Nucleotide; D017422:Sequence Analysis, DNA; D000073336:Whole Genome Sequencing
keywords: Complete genome; Raja pulchra; SNP; mitogenome