title: Direct measurement of efflux in Pseudomonas aeruginosa using an environment-sensitive fluorescent dye.
abstract: Resistance-Nodulation-Division (RND) family pumps AcrB and MexB are the major efflux routes in Escherichia coli and Pseudomonas aeruginosa respectively. Fluorescent environment-sensitive dyes provide a means to study efflux pump function in live bacterial cells in real-time. Recently, we demonstrated the utility of this approach using the dye Nile Red to quantify AcrB-mediated efflux and measured the ability of antibiotics and other efflux pump substrates to compete with efflux of Nile Red, independent of antibacterial activity. Here, we extend this method to P. aeruginosa and describe a novel application that permits the comparison and rank-ordering of bacterial strains by their inherent efflux potential. We show that glucose and l-malate re-energize Nile Red efflux in P. aeruginosa, and we highlight differences in the glucose dependence and kinetics of efflux between P. aeruginosa and E. coli. We quantify the differences in efflux among a set of P. aeruginosa laboratory strains, which include PAO1, the hyper-sensitive strain ATCC 35151 and its parent, ATCC 12055. Efflux of Nile Red in P. aeruginosa is mediated by MexAB-OprM and is slower than in E. coli. In conclusion, we describe an efflux measurement tool for use in antibacterial drug discovery and basic research on P. aeruginosa efflux pumps.
authors.affiliation: Infectious Diseases Department, Vertex Pharmaceuticals Incorporated, 50 Northern Avenue, Boston, MA, USA. Electronic address: ram.iyer@entasistx.com.
authors.forename: Ramkumar
authors.initials: R
authors.lastname: Iyer
authors.affiliation: Infectious Diseases Department, Vertex Pharmaceuticals Incorporated, 50 Northern Avenue, Boston, MA, USA.
authors.forename: Alice L
authors.initials: AL
authors.lastname: Erwin
mesh_terms: D000900:Anti-Bacterial Agents / Q000378:metabolism; D001426:Bacterial Proteins / Q000378:metabolism*; D055808:Drug Discovery / Q000379:methods*; D005456:Fluorescent Dyes / Q000378:metabolism; D019450:Genes, MDR; D005947:Glucose / Q000378:metabolism; D008293:Malates / Q000378:metabolism; D010078:Oxazines / Q000378:metabolism*; D011550:Pseudomonas aeruginosa / Q000378:metabolism*
chemical_list: D000900:Anti-Bacterial Agents; D001426:Bacterial Proteins; D005456:Fluorescent Dyes; D008293:Malates; D010078:Oxazines; D005947:Glucose; C044808:nile red
keywords: ATCC 35151; Efflux pumps; Escherichia coli; Nile Red; Pseudomonas aeruginosa