title: Ion torrent next-generation sequencing reveals the complete mitochondrial genome of endangered mahseer Tor khudree (Sykes, 1839).
abstract: The complete mitochondrial genome of an endangered mahseer (Deccan mahseer), Tor khudree was sequenced using Ion torrent platform for the first time. The genome sequence was 16 573 bp in size, and consists of 13 protein coding genes, 22 tRNAs, 2 rRNA genes and 1 control region. The gene organization and its order were similar to other vertebrates. The overall base composition was A: 31.9%, G: 15.6%, C: 27.68%, T: 24.76%, A + T content 56.6% and the G + C content 43.32%. The phylogenetic tree constructed using a maximum likelihood model showed sister relationship between T. khudree and Tor tambroides.
authors.affiliation: a Division of Fish Genetics and Biotechnology , ICAR - Central Institute of Fisheries Education (Deemed University) , Mumbai , India .
authors.forename: Sudhanshu
authors.initials: S
authors.lastname: Raman
authors.affiliation: a Division of Fish Genetics and Biotechnology , ICAR - Central Institute of Fisheries Education (Deemed University) , Mumbai , India .
authors.forename: A
authors.initials: A
authors.lastname: Pavan-Kumar
authors.affiliation: b Department of Animal Biotechnology , College of Veterinary Science and Animal Husbandry, Anand Agricultural University , Anand , Gujarat , India , and.
authors.forename: Prakash G
authors.initials: PG
authors.lastname: Koringa
authors.affiliation: b Department of Animal Biotechnology , College of Veterinary Science and Animal Husbandry, Anand Agricultural University , Anand , Gujarat , India , and.
authors.forename: Namrata
authors.initials: N
authors.lastname: Patel
authors.affiliation: b Department of Animal Biotechnology , College of Veterinary Science and Animal Husbandry, Anand Agricultural University , Anand , Gujarat , India , and.
authors.forename: Tejas
authors.initials: T
authors.lastname: Shah
authors.affiliation: c ICAR - National Bureau of Fish Genetic Resources , Dilkusha PO , Lucknow , India.
authors.forename: Rajeev K
authors.initials: RK
authors.lastname: Singh
authors.affiliation: a Division of Fish Genetics and Biotechnology , ICAR - Central Institute of Fisheries Education (Deemed University) , Mumbai , India .
authors.forename: Gopal
authors.initials: G
authors.lastname: Krishna
authors.affiliation: b Department of Animal Biotechnology , College of Veterinary Science and Animal Husbandry, Anand Agricultural University , Anand , Gujarat , India , and.
authors.forename: C G
authors.initials: CG
authors.lastname: Joshi
authors.affiliation: a Division of Fish Genetics and Biotechnology , ICAR - Central Institute of Fisheries Education (Deemed University) , Mumbai , India .
authors.forename: P
authors.initials: P
authors.lastname: Gireesh-Babu
authors.affiliation: a Division of Fish Genetics and Biotechnology , ICAR - Central Institute of Fisheries Education (Deemed University) , Mumbai , India .
authors.forename: Aparna
authors.initials: A
authors.lastname: Chaudhari
authors.affiliation: a Division of Fish Genetics and Biotechnology , ICAR - Central Institute of Fisheries Education (Deemed University) , Mumbai , India .
authors.forename: W S
authors.initials: WS
authors.lastname: Lakra
mesh_terms: D000818:Animals; D001482:Base Composition; D056727:Endangered Species; D005399:Fishes / Q000145:classification* / Q000235:genetics*; D050259:Genes, Mitochondrial; D059646:Genome Size; D054629:Genome, Mitochondrial; D059014:High-Throughput Nucleotide Sequencing; D016366:Open Reading Frames; D010802:Phylogeny; D017422:Sequence Analysis, DNA; D000073336:Whole Genome Sequencing
keywords: Mitogenome; next generation sequencing; phylogeny