title: Fluorescence microscopy point spread function model accounting for aberrations due to refractive index variability within a specimen.
abstract: A three-dimensional (3-D) point spread function (PSF) model for wide-field fluorescence microscopy, suitable for imaging samples with variable refractive index (RI) in multilayered media, is presented. This PSF model is a key component for accurate 3-D image restoration of thick biological samples, such as lung tissue. Microscope- and specimen-derived parameters are combined with a rigorous vectorial formulation to obtain a new PSF model that accounts for additional aberrations due to specimen RI variability. Experimental evaluation and verification of the PSF model was accomplished using images from 175-nm fluorescent beads in a controlled test sample. Fundamental experimental validation of the advantage of using improved PSFs in depth-variant restoration was accomplished by restoring experimental data from beads (6  μm in diameter) mounted in a sample with RI variation. In the investigated study, improvement in restoration accuracy in the range of 18 to 35% was observed when PSFs from the proposed model were used over restoration using PSFs from an existing model. The new PSF model was further validated by showing that its prediction compares to an experimental PSF (determined from 175-nm beads located below a thick rat lung slice) with a 42% improved accuracy over the current PSF model prediction.
authors.forename: Sreya
authors.initials: S
authors.lastname: Ghosh
authors.forename: Chrysanthe
authors.initials: C
authors.lastname: Preza
mesh_terms: D000818:Animals; D005456:Fluorescent Dyes / Q000737:chemistry; D007091:Image Processing, Computer-Assisted / Q000379:methods*; D008168:Lung / Q000737:chemistry; D008856:Microscopy, Fluorescence / Q000379:methods*; D015336:Molecular Probe Techniques; D051381:Rats; D012031:Refractometry / Q000379:methods*
chemical_list: D005456:Fluorescent Dyes