title: Viscosity Dependence of Some Protein and Enzyme Reaction Rates: Seventy-Five Years after Kramers.
abstract: Kramers rate theory is a milestone in chemical reaction research, but concerns regarding the basic understanding of condensed phase reaction rates of large molecules in viscous milieu persist. Experimental studies of Kramers theory rely on scaling reaction rates with inverse solvent viscosity, which is often equated with the bulk friction coefficient based on simple hydrodynamic relations. Apart from the difficulty of abstraction of the prefactor details from experimental data, it is not clear why the linearity of rate versus inverse viscosity, k ∝ η(-1), deviates widely for many reactions studied. In most cases, the deviation simulates a power law k ∝ η(-n), where the exponent n assumes fractional values. In rate-viscosity studies presented here, results for two reactions, unfolding of cytochrome c and cysteine protease activity of human ribosomal protein S4, show an exceedingly overdamped rate over a wide viscosity range, registering n values up to 2.4. Although the origin of this extraordinary reaction friction is not known at present, the results indicate that the viscosity exponent need not be bound by the 0-1 limit as generally suggested. For the third reaction studied here, thermal dissociation of CO from nativelike cytochrome c, the rate-viscosity behavior can be explained using Grote-Hynes theory of time-dependent friction in conjunction with correlated motions intrinsic to the protein. Analysis of the glycerol viscosity-dependent rate for the CO dissociation reaction in the presence of urea as the second variable shows that the protein stabilizing effect of subdenaturing amounts of urea is not affected by the bulk viscosity. It appears that a myriad of factors as diverse as parameter uncertainty due to the difficulty of knowing the exact reaction friction and both mode and consequences of protein-solvent interaction work in a complex manner to convey as though Kramers rate equation is not absolute.
authors.affiliation: School of Chemistry, University of Hyderabad, Hyderabad 500 046, India.
authors.forename: Pulikallu
authors.initials: P
authors.lastname: Sashi
authors.affiliation: School of Chemistry, University of Hyderabad, Hyderabad 500 046, India.
authors.forename: Abani K
authors.initials: AK
authors.lastname: Bhuyan
mesh_terms: D002248:Carbon Monoxide / Q000737:chemistry; D045304:Cytochromes c / Q000737:chemistry; D006801:Humans; D007700:Kinetics; D008956:Models, Chemical; D058767:Protein Unfolding; D059748:Proteolysis; D012269:Ribosomal Proteins / Q000737:chemistry*; D013816:Thermodynamics; D014783:Viscosity
chemical_list: D012269:Ribosomal Proteins; C031798:ribosomal protein S4; D002248:Carbon Monoxide; D045304:Cytochromes c