title: Indole acetic acid production by fluorescent Pseudomonas spp. from the rhizosphere of Plectranthus amboinicus (Lour.) Spreng. and their variation in extragenic repetitive DNA sequences.
abstract: Fluorescent Pseudomonas (FP) is a heterogenous group of growth promoting rhizobacteria that regulate plant growth by releasing secondary metabolic compounds viz., indole acetic acid (IAA), siderophores, ammonia and hydrogen cyanide. In the present study, IAA producing FPs from the rhizosphere of Plectranthus amboinicus were characterized morphologically, biochemically and at the molecular level. Molecular identification of the isolates were carried out using Pseudomonas specific primers. The effect of varying time (24, 48, 72 and 96 h), Trp concentrations (100, 200, 300, 400 and 500 μg x ml(-1)), temperature (10, 26, 37 and 50 ± 2 degrees C) and pH (6, 7 and 8) on IAA production by 10 best isolates were studied. Results showed higher IAA production at 72 h incubation, at 300 μg x ml(-1) Trp concentration, temperature 26 ± 2 degrees C and pH 7. TLC with acidified ethyl acetate extract showed that the IAA produced has a similar Rf value to that of the standard IAA. Results of TLC were confirmed by HPLC analysis. Genetic diversity of the isolates was also studied using 40 RAPD and 4 Rep primers. Genetic diversity parameters such as dominance, Shannon index and Simpson index were calculated. Out of 40 RAPD primers tested, 9 (2 OP-D series and 7 OP-E series) were shortlisted for further analysis. Studies using RAPD, ERIC, BOX, REP and GTG5 primers revealed that isolates exhibit significant diversity in repetitive DNA sequences irrespective of the rhizosphere.
authors.forename: Bedhya
authors.initials: B
authors.lastname: Sethia
authors.forename: Mariam
authors.initials: M
authors.lastname: Mustafa
authors.forename: Sneha
authors.initials: S
authors.lastname: Manohar
authors.forename: Savita V
authors.initials: SV
authors.lastname: Patil
authors.forename: Nellickal Subramanian
authors.initials: NS
authors.lastname: Jayamohan
authors.forename: Belur Satyan
authors.initials: BS
authors.lastname: Kumudini
mesh_terms: D004269:DNA, Bacterial / Q000235:genetics*; D007210:Indoleacetic Acids / Q000378:metabolism*; D031346:Plectranthus / Q000382:microbiology*; D011551:Pseudomonas fluorescens / Q000235:genetics* / Q000378:metabolism*; D012091:Repetitive Sequences, Nucleic Acid / Q000235:genetics*; D058441:Rhizosphere
chemical_list: D004269:DNA, Bacterial; D007210:Indoleacetic Acids; C030737:indoleacetic acid