title: The power of next-generation sequencing as illustrated by the neuropeptidome of the crayfish Procambarus clarkii.
abstract: Transcriptomes of the crayfish Procambarus clarkii were analyzed for the presence of transcripts encoding neurohormones, neuropeptides and their receptors. A total of 58 different transcripts were found to encode such ligands and another 82 for their receptors. A very large number of the neuropeptide transcripts appeared to be complete and for those that were not only small parts seemed to be lacking. Transcripts for the neuropeptide GPCRs as well as for the putative receptors for insulin, neuroparsin and eclosion hormone were often also complete or almost so. Of particular interest is the presence of three different neuroparsin genes and two putative neuroparsin receptors. There are also three pigment dispersing hormones as well three likely receptors for these neuropeptides. CNMamide, calcitonin, CCRFamide, natalisin, trissin and relaxin appear to be new crustacean neuropeptides. The recently identified crustacean female sex hormone was also found and in the crayfish appears to be not only expressed in the eyestalk, but in the ovary as well (though not in the testis). Interestingly, there are two other proteins in the crayfish with a structure similar to crustacean female sex hormone, that could be precursors of neurohormones, but these are not expressed by the ovary. The ovary also appears to contain significant numbers of transcripts encoding pigment dispersing hormones, CNMamide as well as glycoprotein B5, but not glycoprotein A2.
authors.affiliation: INCIA UMR 5287 CNRS, Université de Bordeaux, Pessac, France. Electronic address: jan.veenstra@u-bordeaux.fr.
authors.forename: Jan A
authors.initials: JA
authors.lastname: Veenstra
mesh_terms: D000595:Amino Acid Sequence; D000818:Animals; D003400:Astacoidea / Q000145:classification / Q000235:genetics / Q000378:metabolism*; D019295:Computational Biology / Q000379:methods*; D003198:Computer Simulation; D005260:Female; D059014:High-Throughput Nucleotide Sequencing / Q000379:methods*; D008969:Molecular Sequence Data; D009479:Neuropeptides / Q000032:analysis*; D010802:Phylogeny; D020543:Proteome / Q000032:analysis*; D059467:Transcriptome
chemical_list: D009479:Neuropeptides; D020543:Proteome
keywords: Crustacean female sex hormone; Crustaceans; GPCR; Neuroparsin; Neuropeptide; Venus kinase receptor