title: Root precursors of microRNAs in wild emmer and modern wheats show major differences in response to drought stress.
abstract: MicroRNAs, small regulatory molecules with significant impacts on the transcriptional network of all living organisms, have been the focus of several studies conducted mostly on modern wheat cultivars. In this study, we investigated miRNA repertoires of modern durum wheat and its wild relatives, with differing degrees of drought tolerance, to identify miRNA candidates and their targets involved in drought stress response. Root transcriptomes of Triticum turgidum ssp. durum variety Kızıltan and two Triticum turgidum ssp. dicoccoides genotypes TR39477 and TTD-22 under control and drought conditions were assembled from individual RNA-Seq reads and used for in silico identification of miRNAs. A total of 66 miRNAs were identified from all species, across all conditions, of which 46 and 38 of the miRNAs identified from modern durum wheat and wild genotypes, respectively, had not been previously reported. Genotype- and/or stress-specific miRNAs provide insights into our understanding of the complex drought response. Particularly, miR1435, miR5024, and miR7714, identified only from drought-stress roots of drought-tolerant genotype TR39477, can be candidates for future studies to explore and exploit the drought response to develop tolerant varieties.
authors.affiliation: Sabanci University Nanotechnology Research and Application Centre (SUNUM), Sabanci University, Orhanlı, 34956, Tuzla, Istanbul, Turkey, aniakpinar@sabanciuniv.edu.
authors.forename: Bala Ani
authors.initials: BA
authors.lastname: Akpinar
authors.forename: Melda
authors.initials: M
authors.lastname: Kantar
authors.forename: Hikmet
authors.initials: H
authors.lastname: Budak
mesh_terms: D000222:Adaptation, Physiological; D003681:Dehydration; D055864:Droughts; D063990:Gene Ontology; D053858:Metabolic Networks and Pathways; D035683:MicroRNAs / Q000235:genetics / Q000378:metabolism*; D010940:Plant Proteins / Q000235:genetics / Q000378:metabolism; D018517:Plant Roots / Q000235:genetics* / Q000378:metabolism; D018749:RNA, Plant / Q000235:genetics / Q000378:metabolism*; D059467:Transcriptome; D014908:Triticum / Q000235:genetics* / Q000378:metabolism
chemical_list: D035683:MicroRNAs; D010940:Plant Proteins; D018749:RNA, Plant