title: Parameters Involved in Autophosphorylation in Chronic Myeloid Leukemia: a Systems Biology Approach.
abstract: BACKGROUND
  Chronic myeloid leukemia (CML) is a stem cell disorder characterized by the fusion of two oncogenes namely BCR and ABL with their aberrant expression. Autophosphorylation of BCR-ABL oncogenes results in proliferation of CML. The study deals with estimation of rate constant involved in each step of the cellular autophosphorylation process, which are consequently playing important roles in the proliferation of cancerous cells.
  
  
  METHODS
  A mathematical model was proposed for autophosphorylation of BCR-ABL oncogenes utilizing ordinary differential equations to enumerate the rate of change of each responsible system component. The major difficulty to model this process is the lack of experimental data, which are needed to estimate unknown model parameters. Initial concentration data of each substrate and product for BCR-ABL systems were collected from the reported literature. All parameters were optimized through time interval simulation using the fminsearch algorithm.
  
  
  RESULTS
  The rate of change versus time was estimated to indicate the role of each state variable that are crucial for the systems. The time wise change in concentration of substrate shows the convergence of each parameter in autophosphorylation process.
  
  
  CONCLUSIONS
  The role of each constituent parameter and their relative time dependent variations in autophosphorylation process could be inferred.
authors.affiliation: Department of Bioinformatics, Indian Institute of Information Technology, Allahabad, India E-mail : pritish@iiita.ac.in.
authors.forename: Himansu
authors.initials: H
authors.lastname: Kumar
authors.forename: Swapnil
authors.initials: S
authors.lastname: Tichkule
authors.forename: Utkarsh
authors.initials: U
authors.lastname: Raj
authors.forename: Saurabh
authors.initials: S
authors.lastname: Gupta
authors.forename: Swati
authors.initials: S
authors.lastname: Srivastava
authors.forename: Pritish Kumar
authors.initials: PK
authors.lastname: Varadwaj
mesh_terms: D016044:Fusion Proteins, bcr-abl / Q000378:metabolism*; D006801:Humans; D015464:Leukemia, Myelogenous, Chronic, BCR-ABL Positive / Q000378:metabolism*; D008962:Models, Theoretical; D010766:Phosphorylation; D049490:Systems Biology / Q000379:methods*
chemical_list: D016044:Fusion Proteins, bcr-abl