title: The complete mitochondrial genome of Sika deer Cervus nippon hortulorum (Artiodactyla: Cervidae) and phylogenetic studies.
abstract: Sika deer (Cervus nippon Temminck 1836) are classified in the order Artiodactyla, family Cervidae, subfamily Cervinae. At present, the phylogenetic studies of C. nippon are problematic. In this study, we first determined and described the complete mitochondrial sequence of the wild C. nippon hortulorum. The complete mitogenome sequence is 16 566 bp in length, including 13 protein-coding genes, two rRNA genes, 22 tRNA genes, a putative control region (CR) and a light-strand replication origin (OL). The overall base composition was 33.4% A, 28.6% T, 24.5% C, 13.5% G, with a 62.0% AT bias. The 13 protein-coding genes encode 3782 amino acids in total. To further validate the new determined sequences and phylogeny of Sika deer, phylogenetic trees involving 15 most closely related species available in GenBank database were constructed. These results are expected to provide useful molecular data for deer species identification and further phylogenetic studies of Artiodactyla.
authors.affiliation: a College of Wildlife Resource, Northeast Forestry University , Harbin , China.
authors.forename: Yan-Hua
authors.initials: YH
authors.lastname: Liu
authors.affiliation: a College of Wildlife Resource, Northeast Forestry University , Harbin , China.
authors.forename: Xin-Xin
authors.initials: XX
authors.lastname: Liu
authors.affiliation: a College of Wildlife Resource, Northeast Forestry University , Harbin , China.
authors.forename: Ming-Hai
authors.initials: MH
authors.lastname: Zhang
mesh_terms: D000818:Animals; D001482:Base Composition; D003670:Deer / Q000145:classification* / Q000235:genetics*; D050259:Genes, Mitochondrial; D059646:Genome Size; D054629:Genome, Mitochondrial; D016366:Open Reading Frames; D010802:Phylogeny; D017422:Sequence Analysis, DNA; D000073336:Whole Genome Sequencing
keywords: Artiodactyla; Sika deer; mitogenome; phylogenetic tree