title: Network analysis of S. aureus response to ramoplanin reveals modules for virulence factors and resistance mechanisms and characteristic novel genes.
abstract: Staphylococcus aureus is a major human pathogen and ramoplanin is an antimicrobial attributed for effective treatment. The goal of this study was to examine the transcriptomic profiles of ramoplanin sensitive and resistant S. aureus to identify putative modules responsible for virulence and resistance-mechanisms and its characteristic novel genes. The dysregulated genes were used to reconstruct protein functional association networks for virulence-factors and resistance-mechanisms individually. Strong link between metabolic-pathways and development of virulence/resistance is suggested. We identified 15 putative modules of virulence factors. Six hypothetical genes were annotated with novel virulence activity among which SACOL0281 was discovered to be an essential virulence factor EsaD. The roles of MazEF toxin-antitoxin system, SACOL0202/SACOL0201 two-component system and that of amino-sugar and nucleotide-sugar metabolism in virulence are also suggested. In addition, 14 putative modules of resistance mechanisms including modules of ribosomal protein-coding genes and metabolic pathways such as biotin-synthesis, TCA-cycle, riboflavin-biosynthesis, peptidoglycan-biosynthesis etc. are also indicated.
authors.affiliation: Data mining and Text mining laboratory, Department of Bioinformatics, Bharathiar University, Coimbatore, Tamil Nadu, India.
authors.forename: Devika
authors.initials: D
authors.lastname: Subramanian
authors.affiliation: Data mining and Text mining laboratory, Department of Bioinformatics, Bharathiar University, Coimbatore, Tamil Nadu, India. Electronic address: n.jeyakumar@yahoo.co.in.
authors.forename: Jeyakumar
authors.initials: J
authors.lastname: Natarajan
mesh_terms: D000890:Anti-Infective Agents / Q000494:pharmacology; D047630:Depsipeptides / Q000494:pharmacology*; D024881:Drug Resistance, Bacterial / Q000235:genetics*; D015964:Gene Expression Regulation, Bacterial / Q000187:drug effects / Q000235:genetics; D005798:Genes, Bacterial / Q000235:genetics; D053858:Metabolic Networks and Pathways / Q000187:drug effects / Q000235:genetics; D013211:Staphylococcus aureus / Q000187:drug effects* / Q000235:genetics*; D059467:Transcriptome / Q000235:genetics*; D014774:Virulence / Q000187:drug effects / Q000235:genetics; D037521:Virulence Factors / Q000235:genetics*
chemical_list: D000890:Anti-Infective Agents; D047630:Depsipeptides; D037521:Virulence Factors; C041438:ramoplanin
keywords: Antibiotic resistance; Gene networks; Microarray analysis; Staphylococcus aureus; Virulence