title: In Silico Study of Variable Surface Proteins in Plasmodium Species: Perspectives in Drug Design.
abstract: The variable surface proteins expressed by P. falciparum and P. vivax are transported to the surface of infected erythrocyte and are exposed to the host immune system. The possibility of using variable surface proteins as a common drug target has been analyzed in both the Plasmodium species. Sequence analysis of variable surface proteins showed a low-level conservation within as well as between the species. Amino acid composition analysis revealed higher frequency of hydrophilic amino acids as compared with that of hydrophobic residues. In order to gain more insight into their diverse functional role, the three-dimensional structure was predicted using comparative modeling approach. These models were evaluated and validated by checking stereochemistry of underlying amino acids. Structural alignment of variable surface proteins by superimposing them shows less conservation. Due to differences at sequence as well as structural level, the variable surface proteins are expected to show difference in their degree of invasiveness. These differences were also cross-examined by evolutionary study, and the results obtained were in accordance with the aforesaid study. The existence of structural differences noticed in the present study showed that the variable surface proteins could not be used as a common drug target in both the malarial species. Therefore, species-specific strategy may be followed for drug targeting against variable surface proteins of P. falciparum and P. vivax.
authors.affiliation: Department of Biochemistry, Pt. J.N.M. Medical College, Raipur, 492001, India.
authors.forename: Manoj Kumar
authors.initials: MK
authors.lastname: Yadav
authors.affiliation: Departments of Bioinformatics and Physics, MMV, Banaras Hindu University, Varanasi, 221005, India. swati.phys.res@bhu.ac.in.
authors.forename: D
authors.initials: D
authors.lastname: Swati
mesh_terms: D000953:Antigens, Protozoan / Q000737:chemistry / Q000235:genetics / Q000378:metabolism; D019295:Computational Biology; D015195:Drug Design; D008565:Membrane Proteins / Q000737:chemistry* / Q000235:genetics / Q000378:metabolism*; D010961:Plasmodium / Q000235:genetics / Q000378:metabolism*; D017422:Sequence Analysis, DNA; D020080:Tandem Repeat Sequences / Q000235:genetics
chemical_list: D000953:Antigens, Protozoan; D008565:Membrane Proteins
keywords: Antigenic variation; Bootstrap analysis; Comparative modeling; Phylogeny; Structural alignment; Tandem repeats; Variable surface protein