title: Determinants of tolerance to inhibitors in hardwood spent sulfite liquor in genome shuffled Pachysolen tannophilus strains.
abstract: Genome shuffling was used to obtain Pachysolen tannophilus mutants with improved tolerance to inhibitors in hardwood spent sulfite liquor (HW SSL). Genome shuffled strains (GHW301, GHW302 and GHW303) grew at higher concentrations of HW SSL (80 % v/v) compared to the HW SSL UV mutant (70 % v/v) and the wild-type (WT) strain (50 % v/v). In defined media containing acetic acid (0.70-0.90 % w/v), GHW301, GHW302 and GHW303 exhibited a shorter lag compared to the acetic acid UV mutant, while the WT did not grow. Genome shuffled strains produced more ethanol than the WT at higher concentrations of HW SSL and an aspen hydrolysate. To identify the genetic basis of inhibitor tolerance, whole genome sequencing was carried out on GHW301, GHW302 and GHW303 and compared to the WT strain. Sixty single nucleotide variations were identified that were common to all three genome shuffled strains. Of these, 40 were in gene sequences and 20 were within 5 bp-1 kb either up or downstream of protein encoding genes. Based on the mutated gene products, mutations were grouped into functional categories and affected a variety of cellular functions, demonstrating the complexity of inhibitor tolerance in yeast. Sequence analysis of UV mutants (UAA302 and UHW303) from which GHW301, GHW302 and GHW303 were derived, confirmed the success of our cross-mating based genome shuffling strategy. Whole-genome sequencing analysis allowed identification of potential gene targets for tolerance to inhibitors in lignocellulosic hydrolysates.
authors.affiliation: School of Environmental Sciences, University of Guelph, Guelph, ON, N1G 2W1, Canada.
authors.forename: Nicole K
authors.initials: NK
authors.lastname: Harner
authors.forename: Paramjit K
authors.initials: PK
authors.lastname: Bajwa
authors.forename: Philip A
authors.initials: PA
authors.lastname: Formusa
authors.forename: Glen D
authors.initials: GD
authors.lastname: Austin
authors.forename: Marc B
authors.initials: MB
authors.lastname: Habash
authors.forename: Jack T
authors.initials: JT
authors.lastname: Trevors
authors.forename: Chi-Kin
authors.initials: CK
authors.lastname: Chan
authors.forename: Chi-Yip
authors.initials: CY
authors.lastname: Ho
authors.forename: Hung
authors.initials: H
authors.lastname: Lee
mesh_terms: D032621:DNA Shuffling; D004361:Drug Tolerance; D000431:Ethanol / Q000378:metabolism; D005800:Genes, Fungal; D016681:Genome, Fungal; D060847:Metabolic Engineering; D020641:Polymorphism, Single Nucleotide; D004718:Saccharomycetales / Q000187:drug effects* / Q000235:genetics* / Q000254:growth & development / Q000378:metabolism; D017422:Sequence Analysis, DNA; D013447:Sulfites / Q000633:toxicity*
chemical_list: D013447:Sulfites; D000431:Ethanol