The Sound of Silence: Activating Silent Biosynthetic Gene Clusters in Marine Microorganisms.
Unlocking the rich harvest of marine microbial ecosystems has the potential to both safeguard the existence of our species for the future, while also presenting significant lifestyle benefits for commercial gain. However, while significant advances have been made in the field of marine biodiscovery, leading to the introduction of new classes of therapeutics for clinical medicine, cosmetics and industrial products, much of what this natural ecosystem has to offer is locked in, and essentially hidden from our screening methods. Releasing this silent potential represents a significant technological challenge, the key to which is a comprehensive understanding of what controls these systems. Heterologous expression systems have been successful in awakening a number of these cryptic marine biosynthetic gene clusters (BGCs). However, this approach is limited by the typically large size of the encoding sequences. More recently, focus has shifted to the regulatory proteins associated with each BGC, many of which are signal responsive raising the possibility of exogenous activation. Abundant among these are the LysR-type family of transcriptional regulators, which are known to control production of microbial aromatic systems. Although the environmental signals that activate these regulatory systems remain unknown, it offers the exciting possibility of evoking mimic molecules and synthetic expression systems to drive production of potentially novel natural products in microorganisms. Success in this field has the potential to provide a quantum leap forward in medical and industrial bio-product development. To achieve these new endpoints, it is clear that the integrated efforts of bioinformaticians and natural product chemists will be required as we strive to uncover new and potentially unique structures from silent or cryptic marine gene clusters.
BIOMERIT Research Centre, School of Microbiology, University College Cork-National University of Ireland, Cork, Ireland. j.reen@ucc.ie.
F Jerry
FJ
Reen
BIOMERIT Research Centre, School of Microbiology, University College Cork-National University of Ireland, Cork, Ireland. stefano.romano@ucc.ie.
Stefano
S
Romano
School of Microbiology, University College Cork-National University of Ireland, Cork, Ireland. a.dobson@ucc.ie.
Alan D W
AD
Dobson
BIOMERIT Research Centre, School of Microbiology, University College Cork-National University of Ireland, Cork, Ireland. f.ogara@ucc.ie.|School of Biomedical Sciences, Curtin University, Perth WA 6845, Australia. f.ogara@ucc.ie.
Fergal
F
O'Gara
D059001:Aquatic Organisms / Q000235:genetics*; D001688:Biological Products / Q000378:metabolism; D053898:Biosynthetic Pathways / Q000235:genetics*; D017753:Ecosystem; D005786:Gene Expression Regulation / Q000235:genetics; D006801:Humans; D005810:Multigene Family / Q000235:genetics*
D001688:Biological Products
bioactive gene clusters; cryptic; heterologous expression; metagenomics; non-ribosomal peptide synthases; polyketide synthases; silent