Translational genomics for plant breeding with the genome sequence explosion.
The use of next-generation sequencers and advanced genotyping technologies has propelled the field of plant genomics in model crops and plants and enhanced the discovery of hidden bridges between genotypes and phenotypes. The newly generated reference sequences of unstudied minor plants can be annotated by the knowledge of model plants via translational genomics approaches. Here, we reviewed the strategies of translational genomics and suggested perspectives on the current databases of genomic resources and the database structures of translated information on the new genome. As a draft picture of phenotypic annotation, translational genomics on newly sequenced plants will provide valuable assistance for breeders and researchers who are interested in genetic studies.
Department of Plant Science Research Institute of Agriculture and Life Sciences, College of Agriculture and Life Sciences, Seoul National University, Seoul, Korea.
Yang Jae
YJ
Kang
Department of Plant Science Research Institute of Agriculture and Life Sciences, College of Agriculture and Life Sciences, Seoul National University, Seoul, Korea.
Taeyoung
T
Lee
Department of Plant Science Research Institute of Agriculture and Life Sciences, College of Agriculture and Life Sciences, Seoul National University, Seoul, Korea.
Jayern
J
Lee
Department of Plant Science Research Institute of Agriculture and Life Sciences, College of Agriculture and Life Sciences, Seoul National University, Seoul, Korea.
Sangrea
S
Shim
Department of Plant Science Research Institute of Agriculture and Life Sciences, College of Agriculture and Life Sciences, Seoul National University, Seoul, Korea.
Haneul
H
Jeong
Department of Plant Science Research Institute of Agriculture and Life Sciences, College of Agriculture and Life Sciences, Seoul National University, Seoul, Korea.|Indonesian Center for Agricultural Biotechnology and Genomic resources Research and Development (ICABIOGRAD-IAARD), Bogor, Indonesia.
Dani
D
Satyawan
Department of Plant Science Research Institute of Agriculture and Life Sciences, College of Agriculture and Life Sciences, Seoul National University, Seoul, Korea.
Moon Young
MY
Kim
Department of Plant Science Research Institute of Agriculture and Life Sciences, College of Agriculture and Life Sciences, Seoul National University, Seoul, Korea.|Plant Genomics and Breeding Institute, Seoul National University, Seoul, Korea.
Suk-Ha
SH
Lee
D002874:Chromosome Mapping; D018556:Crops, Agricultural / Q000235:genetics*; D030541:Databases, Genetic; D018745:Genome, Plant; D023281:Genomics / Q000379:methods*; D059014:High-Throughput Nucleotide Sequencing / Q000379:methods; D000069600:Plant Breeding / Q000379:methods*
Ontology-driven database; genome-assisted breeding; genomic resources; high-throughput genotyping; next-generation sequencing; translational genomics