Nucleotide sequence and genome organization of atractylodes mottle virus, a new member of the genus Carlavirus.
The complete genome sequence of a member of a distinct species of the genus Carlavirus in the family Betaflexiviridae, tentatively named atractylodes mottle virus (AtrMoV), has been determined. Analysis of its genomic organization indicates that it has a single-stranded, positive-sense genomic RNA of 8866 nucleotides, excluding the poly(A) tail, and consists of six open reading frames typical of members of the genus Carlavirus. The individual open reading frames of AtrMoV show moderately low sequence similarity to those of other carlaviruses at the nucleotide and amino acid sequence levels. Pairwise comparison and phylogenetic analysis suggest that AtrMoV is most closely related to chrysanthemum virus B.
Biosystems and Bioengineering Program, University of Science and Technology (UST), Daejeon, 305-350, South Korea.|Plant Systems Engineering Research Center, Korea Research Institute of Bioscience and Biotechnology, Daejeon, 305-806, South Korea.
Fumei
F
Zhao
Biosystems and Bioengineering Program, University of Science and Technology (UST), Daejeon, 305-350, South Korea.|Plant Systems Engineering Research Center, Korea Research Institute of Bioscience and Biotechnology, Daejeon, 305-806, South Korea.
Davaajargal
D
Igori
Biosystems and Bioengineering Program, University of Science and Technology (UST), Daejeon, 305-350, South Korea.|Plant Systems Engineering Research Center, Korea Research Institute of Bioscience and Biotechnology, Daejeon, 305-806, South Korea.
Seungmo
S
Lim
Biosystems and Bioengineering Program, University of Science and Technology (UST), Daejeon, 305-350, South Korea.|Plant Systems Engineering Research Center, Korea Research Institute of Bioscience and Biotechnology, Daejeon, 305-806, South Korea.
Ran Hee
RH
Yoo
School of Applied Biosciences, Kyungpook National University, Daegu, 702-701, South Korea. suheon@knu.ac.kr.
Su-Heon
SH
Lee
Biosystems and Bioengineering Program, University of Science and Technology (UST), Daejeon, 305-350, South Korea. jsmoon@kribb.re.kr.|Plant Systems Engineering Research Center, Korea Research Institute of Bioscience and Biotechnology, Daejeon, 305-806, South Korea. jsmoon@kribb.re.kr.
Jae Sun
http://orcid.org/0000-0003-0934-1533
JS
Moon
D031174:Atractylodes / Q000821:virology*; D001483:Base Sequence; D017788:Carlavirus / Q000145:classification / Q000235:genetics* / Q000302:isolation & purification*; D016679:Genome, Viral; D008969:Molecular Sequence Data; D016366:Open Reading Frames; D010802:Phylogeny; D010935:Plant Diseases / Q000821:virology*