title: Identification serologically, chemically and genetically of two Escherichia coli strains as candidates for new O serogroups.
abstract: Escherichia coli strains are normally identified by the combination of their O and H (and sometimes K) antigens, and serotyping based on the antigens is believed to be crucial for clinical detection and epidemiological investigation. Two E. coli strains, G5413 and G5287, were isolated from faecal samples of female patients with diarrhoea and were not agglutinated with any antisera that cover the well-known O serogroups of E. coli. We elucidated the O-polysaccharide (OPS) structures and analysed the O-antigen gene clusters of these bacteria. The OPS structure of G5413 established by monosaccharide analysis and NMR spectroscopy was found to be unique amongst known bacterial polysaccharide structures. The O-antigen gene cluster of this strain was sequenced and did not match sequence data with any of the 184 O serogroups that have been recognized internationally. Gene functions were tentatively assigned and were appropriate to the OPS structure. Based on these data, we suggest G5413 as a candidate for a new E. coli O serogroup. Both the OPS structure and O-antigen gene cluster of G5287 were identical to those of E. coli L-19, a candidate for another new O serogroup characterized by us recently. Recognition of these two provisional O serogroups increases the number of known O-antigen forms of E. coli to 186.
authors: Shanghai Municipal Center for Disease Control and Prevention, No. 1380, Zhong Shan Xi Road, Shanghai 200336, PR China.
authors: Min
authors: M
authors: Chen
authors: N. D. Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences, Leninskii Prospekt 47, Moscow 119991, Russia.
authors: Anna M
authors: AM
authors: Shpirt
authors: TEDA Institute of Biological Sciences and Biotechnology, Nankai University, 23 Hongda Street, TEDA, Tianjin 300457, PR China.
authors: Xi
authors: X
authors: Guo
authors: N. D. Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences, Leninskii Prospekt 47, Moscow 119991, Russia.
authors: Alexander S
authors: AS
authors: Shashkov
authors: Shanghai Municipal Center for Disease Control and Prevention, No. 1380, Zhong Shan Xi Road, Shanghai 200336, PR China.
authors: Yuan
authors: Y
authors: Zhuang
authors: TEDA Institute of Biological Sciences and Biotechnology, Nankai University, 23 Hongda Street, TEDA, Tianjin 300457, PR China.
authors: Lei
authors: L
authors: Wang
authors: N. D. Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences, Leninskii Prospekt 47, Moscow 119991, Russia.
authors: Yuriy A
authors: YA
authors: Knirel
authors: TEDA Institute of Biological Sciences and Biotechnology, Nankai University, 23 Hongda Street, TEDA, Tianjin 300457, PR China.
authors: Bin
authors: B
authors: Liu
mesh_terms: D004926:Escherichia coli / Q000737:chemistry / Q000145:classification* / Q000235:genetics*; D023061:Gene Order; D005838:Genotype; D008070:Lipopolysaccharides / Q000737:chemistry; D005810:Multigene Family; D019906:Nuclear Magnetic Resonance, Biomolecular; D019081:O Antigens / Q000235:genetics*; D065288:Serogroup
chemical_list: D008070:Lipopolysaccharides; D019081:O Antigens