title: setsApp for Cytoscape: Set operations for Cytoscape Nodes and Edges.
abstract: setsApp ( http://apps.cytoscape.org/apps/setsapp) is a relatively simple Cytoscape 3 app for users to handle groups of nodes and/or edges. It supports several important biological workflows and enables various set operations. setsApp provides basic tools to create sets of nodes or edges, import or export sets, and perform standard set operations (union, difference, intersection) on those sets. Automatic set partitioning and layout functions are also provided. The sets functionality is also exposed to users and app developers in the form of a set of commands that can be used for scripting purposes or integrated in other Cytoscape apps.
authors: Resource for Biocomputing, Visualization, and Informatics, University of California, San Francisco, CA 94143, USA.
authors: John H
authors: JH
authors: Morris
authors: Gladstone Institutes, San Francisco, CA, USA.
authors: Samad
authors: S
authors: Lotia
authors: Resource for Biocomputing, Visualization, and Informatics, University of California, San Francisco, CA 94143, USA.
authors: Allan
authors: A
authors: Wu
authors: Resource for Biocomputing, Visualization, and Informatics, University of California, San Francisco, CA 94143, USA ; Max Planck Institute for Informatics, Saarbrücken, 66123, Germany.
authors: Nadezhda T
authors: NT
authors: Doncheva
authors: University Medicine Greifswald, Greifswald, 17489, Germany ; Graz University of Technology, Graz, 8010, Austria ; BioTechMed-Graz, Graz, 8036, Austria.
authors: Mario
authors: M
authors: Albrecht
authors: Gladstone Institutes, San Francisco, CA, USA.
authors: Alexander R
authors: AR
authors: Pico
authors: Resource for Biocomputing, Visualization, and Informatics, University of California, San Francisco, CA 94143, USA.
authors: Thomas E
authors: TE
authors: Ferrin
keywords: app; cytoscape; sets functionality