title: The Pacific Northwest National Laboratory library of bacterial and archaeal proteomic biodiversity.
abstract: This Data Descriptor announces the submission to public repositories of the PNNL Biodiversity Library, a large collection of global proteomics data for 112 bacterial and archaeal organisms. The data comprises 35,162 tandem mass spectrometry (MS/MS) datasets from ~10 years of research. All data has been searched, annotated and organized in a consistent manner to promote reuse by the community. Protein identifications were cross-referenced with KEGG functional annotations which allows for pathway oriented investigation. We present the data as a freely available community resource. A variety of data re-use options are described for computational modelling, proteomics assay design and bioengineering. Instrument data and analysis files are available at ProteomeXchange via the MassIVE partner repository under the identifiers PXD001860 and MSV000079053.
authors: Biological Sciences Division, Pacific Northwest National Laboratory , Richland, Washington 99354, USA.
authors: Samuel H
authors: SH
authors: Payne
authors: Biological Sciences Division, Pacific Northwest National Laboratory , Richland, Washington 99354, USA.
authors: Matthew E
authors: ME
authors: Monroe
authors: Biological Sciences Division, Pacific Northwest National Laboratory , Richland, Washington 99354, USA.
authors: Christopher C
authors: CC
authors: Overall
authors: Biological Sciences Division, Pacific Northwest National Laboratory , Richland, Washington 99354, USA.
authors: Gary R
authors: GR
authors: Kiebel
authors: Biological Sciences Division, Pacific Northwest National Laboratory , Richland, Washington 99354, USA.
authors: Michael
authors: M
authors: Degan
authors: Biological Sciences Division, Pacific Northwest National Laboratory , Richland, Washington 99354, USA.
authors: Bryson C
authors: BC
authors: Gibbons
authors: Biological Sciences Division, Pacific Northwest National Laboratory , Richland, Washington 99354, USA.
authors: Grant M
authors: GM
authors: Fujimoto
authors: Environmental Molecular Science Laboratory, Pacific Northwest National Laboratory , Richland, Washington 99354, USA.
authors: Samuel O
authors: SO
authors: Purvine
authors: Biological Sciences Division, Pacific Northwest National Laboratory , Richland, Washington 99354, USA.
authors: Joshua N
authors: JN
authors: Adkins
authors: Biological Sciences Division, Pacific Northwest National Laboratory , Richland, Washington 99354, USA.
authors: Mary S
authors: MS
authors: Lipton
authors: Biological Sciences Division, Pacific Northwest National Laboratory , Richland, Washington 99354, USA.
authors: Richard D
authors: RD
authors: Smith
mesh_terms: D001105:Archaea / Q000235:genetics / Q000378:metabolism; D019843:Archaeal Proteins; D001419:Bacteria / Q000235:genetics / Q000378:metabolism; D001426:Bacterial Proteins; D044822:Biodiversity; D030562:Databases, Protein; D040901:Proteomics; D053719:Tandem Mass Spectrometry
chemical_list: D019843:Archaeal Proteins; D001426:Bacterial Proteins