title: MicroRNA-Sequence Profiling Reveals Novel Osmoregulatory MicroRNA Expression Patterns in Catadromous Eel Anguilla marmorata.
abstract: MicroRNAs (miRNAs) are a class of endogenous small non-coding RNAs that regulate gene expression by post-transcriptional repression of mRNAs. Recently, several miRNAs have been confirmed to execute directly or indirectly osmoregulatory functions in fish via translational control. In order to clarify whether miRNAs play relevant roles in the osmoregulation of Anguilla marmorata, three sRNA libraries of A. marmorata during adjusting to three various salinities were sequenced by Illumina sRNA deep sequencing methods. Totally 11,339,168, 11,958,406 and 12,568,964 clear reads were obtained from 3 different libraries, respectively. Meanwhile, 34 conserved miRNAs and 613 novel miRNAs were identified using the sequence data. MiR-10b-5p, miR-181a, miR-26a-5p, miR-30d and miR-99a-5p were dominantly expressed in eels at three salinities. Totally 29 mature miRNAs were significantly up-regulated, while 72 mature miRNAs were significantly down-regulated in brackish water (10‰ salinity) compared with fresh water (0‰ salinity); 24 mature miRNAs were significantly up-regulated, while 54 mature miRNAs were significantly down-regulated in sea water (25‰ salinity) compared with fresh water. Similarly, 24 mature miRNAs were significantly up-regulated, while 45 mature miRNAs were significantly down-regulated in sea water compared with brackish water. The expression patterns of 12 dominantly expressed miRNAs were analyzed at different time points when the eels transferred from fresh water to brackish water or to sea water. These miRNAs showed differential expression patterns in eels at distinct salinities. Interestingly, miR-122, miR-140-3p and miR-10b-5p demonstrated osmoregulatory effects in certain salinities. In addition, the identification and characterization of differentially expressed miRNAs at different salinities can clarify the osmoregulatory roles of miRNAs, which will shed lights for future studies on osmoregulation in fish.
authors: Jiangsu Key Laboratory for Biodiversity and Biotechnology, College of Life Sciences, Nanjing Normal University, Nanjing, China; Co-Innovation Center for Marine Bio-Industry Technology of Jiangsu Province, Lian Yungang, China.
authors: Xiaolu
authors: X
authors: Wang
authors: Faculty of Medicine, Dentistry and Health Sciences, The University of Melbourne, Parkville VIC 3010, Australia.
authors: Danqing
authors: D
authors: Yin
authors: Jiangsu Key Laboratory for Biodiversity and Biotechnology, College of Life Sciences, Nanjing Normal University, Nanjing, China; Co-Innovation Center for Marine Bio-Industry Technology of Jiangsu Province, Lian Yungang, China.
authors: Peng
authors: P
authors: Li
authors: Jiangsu Key Laboratory for Biodiversity and Biotechnology, College of Life Sciences, Nanjing Normal University, Nanjing, China; Co-Innovation Center for Marine Bio-Industry Technology of Jiangsu Province, Lian Yungang, China.
authors: Shaowu
authors: S
authors: Yin
authors: Jiangsu Key Laboratory for Biodiversity and Biotechnology, College of Life Sciences, Nanjing Normal University, Nanjing, China; Co-Innovation Center for Marine Bio-Industry Technology of Jiangsu Province, Lian Yungang, China.
authors: Li
authors: L
authors: Wang
authors: Jiangsu Key Laboratory for Biodiversity and Biotechnology, College of Life Sciences, Nanjing Normal University, Nanjing, China; Co-Innovation Center for Marine Bio-Industry Technology of Jiangsu Province, Lian Yungang, China.
authors: Yihe
authors: Y
authors: Jia
authors: Department of Life Sciences, Glasgow Caledonian University, Cowcaddens Road, Glasgow, United Kingdom.
authors: Xinhua
authors: X
authors: Shu
mesh_terms: D000811:Anguilla / Q000235:genetics / Q000502:physiology; D000818:Animals; D020869:Gene Expression Profiling; D005786:Gene Expression Regulation; D035683:MicroRNAs / Q000096:biosynthesis / Q000235:genetics*; D064587:Osmoregulation / Q000235:genetics*; D012333:RNA, Messenger / Q000096:biosynthesis; D059467:Transcriptome / Q000235:genetics*
chemical_list: D035683:MicroRNAs; D012333:RNA, Messenger