Evaluation of β-Amyloid Peptides Fibrillation Induced by Nanomaterials Based on Molecular Dynamics and Surface Plasmon Resonance.
This report investigated the effect of carbon nanomaterials, single-wall carbon nanotube (SWCNT) and graphene oxide, on fibrillation of β-amyloid 40 (Aβ40) based on surface plasmon resonance (SPR) and molecular dynamics (MD). MD simulations are carried out in order to reveal the molecular mechanisms of the interaction between nanomaterials and Aβ40. The strong interaction between Aβ40 and nanomaterials is related to Van der Waals forces and the Coulomb force, inducing delicate manipulation of the main bonding energy for fibrillation of Aβ40. The interaction energy between the Aβ peptide and graphene is higher than that of SWCNT. Experimental results show both carbon nanomaterials enhance the appearance of a critical nucleus for nucleation of peptide fibrils. Graphene is more beneficial to assist the nucleation process than SWCNT. Combination of SPR and molecular dynamics could be a high-throughput method to screen protein fibrillation.
Yafei
Y
Hou
Pengfei
P
Li
Hongjian
H
Zhou
Xiaoli
X
Zhu
Haifeng
H
Chen
Jaebeom
J
Lee
Kwangnak
K
Koh
Zhongming
Z
Shen
Hongxia
H
Chen
D000682:Amyloid / Q000737:chemistry* / Q000648:ultrastructure*; D016229:Amyloid beta-Peptides / Q000737:chemistry* / Q000648:ultrastructure; D001665:Binding Sites; D003198:Computer Simulation; D008422:Materials Testing; D008956:Models, Chemical; D056004:Molecular Dynamics Simulation; D046912:Multiprotein Complexes / Q000138:chemical synthesis / Q000648:ultrastructure; D053758:Nanoparticles / Q000737:chemistry* / Q000648:ultrastructure; D010446:Peptide Fragments / Q000737:chemistry* / Q000648:ultrastructure; D011485:Protein Binding; D020349:Surface Plasmon Resonance / Q000379:methods*
D000682:Amyloid; D016229:Amyloid beta-Peptides; D046912:Multiprotein Complexes; D010446:Peptide Fragments; C078592:amyloid beta-protein (1-40)