Engineering of core promoter regions enables the construction of constitutive and inducible promoters in Halomonas sp.
Halomonas strain TD01, a newly identified halophilic bacterium, has proven to be a promising low-cost host for the production of chemicals. However, genetic manipulation in Halomonas sp. is still difficult due to the lack of well-characterized and tunable expression systems. In this study, a systematic, efficient method was exploited to construct both a constitutive promoter library and inducible promoters. Porin, a highly expressed protein in Halomonas TD01, was first identified from the Halomonas TD01 proteome. Subsequent study of the intergenic region upstream of porin led to the identification of a core promoter region, including -10 and -35 elements. By randomizing the sequence between the -35 and -10 elements, a constitutive promoter library was obtained with 310-fold variation in transcriptional activity; an inducible promoter with a >200-fold induction was built by integrating a lac operator into the core promoter region. As two complementary expression systems, the constitutive and inducible promoters were then employed to regulate the biosynthetic pathway of poly-3-hydroxybutyrate (PHB) in Halomonas TD01, demonstrating the usefulness of the expression systems, furthermore, they could be applied in future metabolic engineering of Halomonas TD strains, and the systematic method used in this study can be generalized to other less-characterized bacterial strains.
Center for Quantitative Biology and Peking-Tsinghua Joint Center for Life Sciences, Peking University, Beijing, China.
Tingting
T
Li
MOE Key Lab of Bioinformatics, Department of Biological Science and Biotechnology, School of Life Science, Tsinghua-Peking Joint Center for Life Sciences, Tsinghua University, Beijing, China.
Teng
T
Li
Center for Quantitative Biology and Peking-Tsinghua Joint Center for Life Sciences, Peking University, Beijing, China.
Weiyue
W
Ji
Center for Quantitative Biology and Peking-Tsinghua Joint Center for Life Sciences, Peking University, Beijing, China.
Qiuyue
Q
Wang
Center for Quantitative Biology and Peking-Tsinghua Joint Center for Life Sciences, Peking University, Beijing, China.
Haoqian
H
Zhang
MOE Key Lab of Bioinformatics, Department of Biological Science and Biotechnology, School of Life Science, Tsinghua-Peking Joint Center for Life Sciences, Tsinghua University, Beijing, China.
Guo-Qiang
GQ
Chen
CAS Key Laboratory of Microbial Physiological and Metabolic Engineering, Institute of Microbiology, Chinese Academy of Sciences, Beijing, China. louchunbo@im.ac.cn.
Chunbo
C
Lou
Center for Quantitative Biology and Peking-Tsinghua Joint Center for Life Sciences, Peking University, Beijing, China. qi@pku.edu.cn.|School of Physics and the State Key Laboratory for Artificial Microstructures and Mesoscopic Physics, Peking University, Beijing, China. qi@pku.edu.cn.
Qi
Q
Ouyang
D001426:Bacterial Proteins / Q000235:genetics; D057005:Bioengineering / Q000379:methods*; D053898:Biosynthetic Pathways; D015723:Gene Library; D020632:Halomonas / Q000235:genetics*; D006885:Hydroxybutyrates / Q000378:metabolism; D007763:Lac Operon; D011091:Polyesters / Q000378:metabolism; D018272:Porins / Q000235:genetics*; D011401:Promoter Regions, Genetic; D000094122:Polyhydroxybutyrates
D001426:Bacterial Proteins; D006885:Hydroxybutyrates; D011091:Polyesters; D018272:Porins; C003182:poly-beta-hydroxybutyrate; D000094122:Polyhydroxybutyrates
Halomonas; Inducible promoter; Promoter engineering; Promoter library; Synthetic biology