Validation of reference genes for real-time quantitative RT-PCR studies in Talaromyces marneffei.
Talaromyces marneffei (or Penicillium marneffei) is an opportunistic pathogen that can cause disseminated disease in human immunodeficiency virus (HIV)-infected patients, especially in Southeast Asia. T. marneffei is a thermally dimorphic fungus. Typically, T. marneffei has an adaptive morphology. It grows in a filamentous form (mould) at 25°C and can differentiate to produce asexual spores (conidia). In contrast, at 37°C, it grows as yeast cells that divide by fission. This study aimed to validate a quantitative reverse-transcription polymerase chain reaction (qRT-PCR) for gene expression analysis in T. marneffei. Analysis of relative gene expression by qRT-PCR requires normalization of data using a proper reference gene. However, suitable reference genes have not been identified in gene expression studies across different cell types or under different experimental conditions in T. marneffei. In this study, four housekeeping genes were selected for analysis: β-actin (act); glyceraldehyde-3-phosphate dehydrogenase (gapdh); β-tubulin (benA) and 18S rRNA. Two analysis programs; BestKeeper and geNorm software tools were used to validate the expression of the candidate normalized genes. The results indicated that the actin gene was the one which was most stably expressed and was recommended for use as the endogenous control for gene expression analysis of all growth forms in T. marneffei by qRT-PCR under normal and stress conditions.
Department of Microbiology, Faculty of Medicine, Chiang Mai University, Chiang Mai, Thailand.
Wiyada
W
Dankai
Department of Microbiology, Faculty of Medicine, Chiang Mai University, Chiang Mai, Thailand.
Monsicha
M
Pongpom
Department of Microbiology, Faculty of Medicine, Chiang Mai University, Chiang Mai, Thailand.
Nongnuch
N
Vanittanakom
D000199:Actins / Q000235:genetics; D020869:Gene Expression Profiling / Q000379:methods / Q000592:standards*; D005800:Genes, Fungal; D005987:Glyceraldehyde-3-Phosphate Dehydrogenases / Q000235:genetics; D012337:RNA, Ribosomal, 18S / Q000235:genetics; D060888:Real-Time Polymerase Chain Reaction / Q000379:methods / Q000592:standards*; D012015:Reference Standards; D020133:Reverse Transcriptase Polymerase Chain Reaction / Q000379:methods / Q000592:standards*; D032901:Talaromyces / Q000235:genetics*; D014404:Tubulin / Q000235:genetics
D000199:Actins; D012337:RNA, Ribosomal, 18S; D014404:Tubulin; D005987:Glyceraldehyde-3-Phosphate Dehydrogenases
Actin; Penicillium marneffei; Reference gene; Talaromyces marneffei; qRT-PCR