Complete genome sequence of a tentative new caulimovirus from the medicinal plant Atractylodes macrocephala.
A total of nine contigs related to caulimovirus-like sequences were detected using high-throughput paired-end RNA sequencing. An attempt to find the plant sample infected with this type of virus identified the medicinal plant Atractylodes macrocephala Koidzumi showing mild mottle symptoms. Subsequently, the complete DNA genome sequence of the Atractylodes virus was determined. The 8,105-nt genome of the virus was composed of six open reading frames and displayed the highest nucleotide sequence identity (70%) with soybean Putnam virus. Based upon the symptoms observed on the source plant, we propose to refer to this new member of the genus Caulimovirus as atractylodes mild mottle virus.
Plant Systems Engineering Research Center, Korea Research Institute of Bioscience and Biotechnology, Daejeon, 305-806, Republic of Korea.|Biosystems and Bioengineering Program, University of Science and Technology (UST), Daejeon, 305-350, Republic of Korea.
Seungmo
S
Lim
Plant Systems Engineering Research Center, Korea Research Institute of Bioscience and Biotechnology, Daejeon, 305-806, Republic of Korea.|Biosystems and Bioengineering Program, University of Science and Technology (UST), Daejeon, 305-350, Republic of Korea.
Davaajargal
D
Igori
Plant Systems Engineering Research Center, Korea Research Institute of Bioscience and Biotechnology, Daejeon, 305-806, Republic of Korea.|Biosystems and Bioengineering Program, University of Science and Technology (UST), Daejeon, 305-350, Republic of Korea.
Fumei
F
Zhao
Plant Systems Engineering Research Center, Korea Research Institute of Bioscience and Biotechnology, Daejeon, 305-806, Republic of Korea.|Biosystems and Bioengineering Program, University of Science and Technology (UST), Daejeon, 305-350, Republic of Korea.
Ran Hee
RH
Yoo
Department of Herbal Crop Research, National Institute of Horticultural and Herbal Science, RDA, Eumseong, 369-873, Republic of Korea.
Tae-Jin
TJ
An
Department of Applied Biology, Chungnam National University, Daejeon, 305-764, Republic of Korea.
Hyoun-Sub
HS
Lim
School of Applied Biosciences, Kyungpook National University, Daegu, 702-701, Republic of Korea. suheon@knu.ac.kr.|Institute of Plant Medicine, Kyungpook National University, Daegu, 702-701, Republic of Korea. suheon@knu.ac.kr.
Su-Heon
SH
Lee
Plant Systems Engineering Research Center, Korea Research Institute of Bioscience and Biotechnology, Daejeon, 305-806, Republic of Korea. jsmoon@kribb.re.kr.|Biosystems and Bioengineering Program, University of Science and Technology (UST), Daejeon, 305-350, Republic of Korea. jsmoon@kribb.re.kr.
Jae Sun
http://orcid.org/0000-0003-0934-1533
JS
Moon
D031174:Atractylodes / Q000821:virology*; D001483:Base Sequence; D017796:Caulimovirus / Q000737:chemistry / Q000145:classification / Q000235:genetics* / Q000302:isolation & purification*; D016679:Genome, Viral; D008969:Molecular Sequence Data; D009690:Nucleic Acid Conformation; D016366:Open Reading Frames; D010802:Phylogeny; D010935:Plant Diseases / Q000821:virology*; D010946:Plants, Medicinal / Q000821:virology*; D014764:Viral Proteins / Q000235:genetics
D014764:Viral Proteins