Developing accurate molecular mechanics force fields for conjugated molecular systems.
A rapid method to parameterize the intramolecular component of classical force fields for complex conjugated molecules is proposed. The method is based on a procedure of force matching with a reference electronic structure calculation. It is particularly suitable for those applications where molecular dynamics simulations are used to generate structures that are therefore analysed by electronic structure methods, because it is possible to build force fields that are consistent with electronic structure calculations that follow classical simulations. Such applications are commonly encountered in organic electronics, spectroscopy of complex systems and photobiology (e.g. photosynthetic systems). We illustrate the method by parameterizing the force fields of a molecule used in molecular semiconductors (2,2-dicyanovinyl-capped S,N-heteropentacene or DCV-SN5), a polymeric semiconductor (thieno[3,2-b]thiophene-diketopyrrolopyrrole TT-DPP) and a chromophore embedded in a protein environment (15,16-dihydrobiliverdin or DBV) where several hundreds of parameters need to be optimized in parallel.
Department of Chemistry and Centre for Scientific Computing, University of Warwick, Coventry CV4 7AL, UK. H.Do@nottingham.ac.uk A.Troisi@warwick.ac.uk.
Hainam
H
Do
Alessandro
A
Troisi
D007659:Ketones / Q000737:chemistry; D008968:Molecular Conformation; D056004:Molecular Dynamics Simulation; D017434:Protein Structure, Tertiary; D011506:Proteins / Q000737:chemistry; D011758:Pyrroles / Q000737:chemistry; D012666:Semiconductors
D007659:Ketones; D011506:Proteins; D011758:Pyrroles; C000604894:diketopyrrolopyrrole dye