Investigation of the Role of Polysaccharide in the Dolomite Growth at Low Temperature by Using Atomistic Simulations.
Dehydration of water from surface Mg(2+) is most likely the rate-limiting step in the dolomite growth at low temperature. Here, we investigate the role of polysaccharide in this step using classical molecular dynamics (MD) calculations. Free energy (potential of mean force, PMF) calculations have been performed for water molecules leaving the first two hydration layers above the dolomite (104) surface under the following three conditions: without catalyst, with monosaccharide (mannose), and with oligosaccharide (three units of mannose). MD simulations reveal that there is no obvious effect of monosaccharide in lowering the dehydration barrier for surface Mg(2+). However, we found that there are metastable configurations of oligosaccharide, which can decrease the dehydration barrier of surface Mg(2+) by about 0.7-1.1 kcal/mol. In these configurations, the molecule lies relatively flat on the surface and forms a bridge shape. The hydrophobic space near the surface created by the nonpolar -CH groups of the oligosaccharide in the bridge conformation is the reason for the observed reduction of dehydration barrier.
NASA Astrobiology Institute, Department of Geoscience, ‡Department of Materials Science and Engineering, and §Materials Science Program, University of Wisconsin-Madison , Madison, Wisconsin 53706, United States.
Zhizhang
Z
Shen
NASA Astrobiology Institute, Department of Geoscience, ‡Department of Materials Science and Engineering, and §Materials Science Program, University of Wisconsin-Madison , Madison, Wisconsin 53706, United States.
Izabela
I
Szlufarska
NASA Astrobiology Institute, Department of Geoscience, ‡Department of Materials Science and Engineering, and §Materials Science Program, University of Wisconsin-Madison , Madison, Wisconsin 53706, United States.
Philip E
PE
Brown
NASA Astrobiology Institute, Department of Geoscience, ‡Department of Materials Science and Engineering, and §Materials Science Program, University of Wisconsin-Madison , Madison, Wisconsin 53706, United States.
Huifang
H
Xu
D056004:Molecular Dynamics Simulation; D011134:Polysaccharides / Q000737:chemistry*; D013696:Temperature
D011134:Polysaccharides