title: A Parameter Estimation Method for Biological Systems modelled by ODE/DDE Models Using Spline Approximation and Differential Evolution Algorithm.
abstract: The inverse problem of identifying unknown parameters of known structure dynamical biological systems, which are modelled by ordinary differential equations or delay differential equations, from experimental data is treated in this paper. A two stage approach is adopted: first, combine spline theory and Nonlinear Programming (NLP), the parameter estimation problem is formulated as an optimization problem with only algebraic constraints; then, a new differential evolution (DE) algorithm is proposed to find a feasible solution. The approach is designed to handle problem of realistic size with noisy observation data. Three cases are studied to evaluate the performance of the proposed algorithm: two are based on benchmark models with priori-determined structure and parameters; the other one is a particular biological system with unknown model structure. In the last case, only a set of observation data available and in this case a nominal model is adopted for the identification. All the test systems were successfully identified by using a reasonable amount of experimental data within an acceptable computation time. Experimental evaluation reveals that the proposed method is capable of fast estimation on the unknown parameters with good precision.
authors.forename: Choujun
authors.initials: C
authors.lastname: Zhan
authors.forename: Wuchao
authors.initials: W
authors.lastname: Situ
authors.forename: Lam Fat
authors.initials: LF
authors.lastname: Yeung
authors.forename: Peter Wai-Ming
authors.initials: PW
authors.lastname: Tsang
authors.forename: Genke
authors.initials: G
authors.lastname: Yang
mesh_terms: D000465:Algorithms; D000818:Animals; D008322:Mammals; D008954:Models, Biological; D015203:Reproducibility of Results; D015398:Signal Transduction; D049490:Systems Biology / Q000379:methods*; D015003:Yeasts