title: Investigation of biochemical changes of the ovine calpain 3 exon-10 polymorphism.
abstract: Calpain 3 (CAPN3) is a tissue specific calpain, and its mRNA is the most expressed calpain isoform in skeletal muscles. Many mutations and polymorphisms within the human CAPN3 gene have been reported and related to limb-girdle muscular dystrophy. Several reports link CAPN3 polymorphisms and meat quality. An association between three allele variants in exon-10 of ovine CAPN3 and the yield of fat trimmed meat cuts has been reported. This research investigated the biochemical significance of polymorphic variation in CAPN3. CAPN3 mRNA sequences were obtained from muscle samples collected from lambs which were homozygous for each of the three alleles. Four single base substitutions were found besides those in exon-10, but none of them, including the variations within exon-10, caused a change in amino acid sequence. The expression of CAPN3 mRNA and the amounts of CAPN3 protein were also compared among genotypes, and no significant differences were found. These results suggest that the reported association of specific allele variants within CAPN3 exon-10 to phenotype variations were not direct effects of CAPN3 polymorphisms. Interspecies analyses of the CAPN3 sequences indicated that the sequence reported here is more likely to be the correct common ovine CAPN3 sequence than the reference sequence.
authors.affiliation: Wine Food and Molecular Biosciences Department, Lincoln University, P.O Box84 Lincoln 7647 New Zealand. Electronic address: ymu11@hotmail.com.
authors.forename: Yukiyo
authors.initials: Y
authors.lastname: Muto
authors.affiliation: Wine Food and Molecular Biosciences Department, Lincoln University, P.O Box84 Lincoln 7647 New Zealand. Electronic address: james.morton@lincoln.ac.nz.
authors.forename: Jim
authors.initials: J
authors.lastname: Morton
authors.affiliation: Wine Food and Molecular Biosciences Department, Lincoln University, P.O Box84 Lincoln 7647 New Zealand. Electronic address: David.Palmer@lincoln.ac.nz.
authors.forename: David
authors.initials: D
authors.lastname: Palmer
mesh_terms: D000818:Animals; D002154:Calpain / Q000235:genetics* / Q000378:metabolism; D005091:Exons; D005838:Genotype; D006720:Homozygote; D018482:Muscle, Skeletal / Q000378:metabolism*; D020641:Polymorphism, Single Nucleotide; D000069466:Red Meat; D017423:Sequence Analysis, RNA; D034561:Sheep, Domestic
chemical_list: D002154:Calpain
keywords: Calpain 1; Calpain 2; Calpain 3; Exon-10; Limb-girdle muscular dystrophy; Polymorphism