title: Exploring the Altered Dynamics of Mammalian Central Carbon Metabolic Pathway in Cancer Cells: A Classical Control Theoretic Approach.
abstract: BACKGROUND
  In contrast with normal cells, most of the cancer cells depend on aerobic glycolysis for energy production in the form of adenosine triphosphate (ATP) bypassing mitochondrial oxidative phosphorylation. Moreover, compared to normal cells, cancer cells exhibit higher consumption of glucose with higher production of lactate. Again, higher rate of glycolysis provides the necessary glycolytic intermediary precursors for DNA, protein and lipid synthesis to maintain high active proliferation of the tumor cells. In this scenario, classical control theory based approach may be useful to explore the altered dynamics of the cancer cells. Since the dynamics of the cancer cells is different from that of the normal cells, understanding their dynamics may lead to development of novel therapeutic strategies.
  
  
  METHODS
  We have developed a model based on the state space equations of classical control theory along with an order reduction technique to mimic the actual dynamic behavior of mammalian central carbon metabolic (CCM) pathway in normal cells. Here, we have modified Michaelis Menten kinetic equation to incorporate feedback mechanism along with perturbations and cross talks associated with a metabolic pathway. Furthermore, we have perturbed the proposed model to reduce the mitochondrial oxidative phosphorylation. Thereafter, we have connected proportional-integral (PI) controller(s) with the model for tuning it to behave like the CCM pathway of a cancer cell. This methodology allows one to track the altered dynamics mediated by different enzymes.
  
  
  CONCLUSIONS
  The proposed model successfully mimics all the probable dynamics of the CCM pathway in normal cells. Moreover, experimental results demonstrate that in cancer cells, a coordination among enzymes catalyzing pentose phosphate pathway and intermediate glycolytic enzymes along with switching of pyruvate kinase (M2 isoform) plays an important role to maintain their altered dynamics.
authors.affiliation: Indian Statistical Institute, 203 B.T. Road, Kolkata 700108, West Bengal, India.
authors.forename: Debjyoti
authors.initials: D
authors.lastname: Paul
authors.affiliation: Machine Intelligence Unit, Indian Statistical Institute, 203 B.T. Road, Kolkata 700108, West Bengal, India.
authors.forename: Abhijit
authors.initials: A
authors.lastname: Dasgupta
authors.affiliation: Machine Intelligence Unit, Indian Statistical Institute, 203 B.T. Road, Kolkata 700108, West Bengal, India.
authors.forename: Rajat K
authors.initials: RK
authors.lastname: De
mesh_terms: D000818:Animals; D002244:Carbon / Q000378:metabolism*; D006801:Humans; D008954:Models, Biological; D009369:Neoplasms / Q000378:metabolism*
chemical_list: D002244:Carbon