title: Gene Expression of Type VI Secretion System Associated with Environmental Survival in Acidovorax avenae subsp. avenae by Principle Component Analysis.
abstract: Valine glycine repeat G (VgrG) proteins are regarded as one of two effectors of Type VI secretion system (T6SS) which is a complex multi-component secretion system. In this study, potential biological roles of T6SS structural and VgrG genes in a rice bacterial pathogen, Acidovorax avenae subsp. avenae (Aaa) RS-1, were evaluated under seven stress conditions using principle component analysis of gene expression. The results showed that growth of the pathogen was reduced by H₂O₂ and paraquat-induced oxidative stress, high salt, low temperature, and vgrG mutation, compared to the control. However, pathogen growth was unaffected by co-culture with a rice rhizobacterium Burkholderia seminalis R456. In addition, expression of 14 T6SS structural and eight vgrG genes was significantly changed under seven conditions. Among different stress conditions, high salt, and low temperature showed a higher effect on the expression of T6SS gene compared with host infection and other environmental conditions. As a first report, this study revealed an association of T6SS gene expression of the pathogen with the host infection, gene mutation, and some common environmental stresses. The results of this research can increase understanding of the biological function of T6SS in this economically-important pathogen of rice.
authors.affiliation: State Key Laboratory of Rice Biology, Institute of Biotechnology, Zhejiang University, Hangzhou 310058, China. twelue@163.com.
authors.forename: Zhouqi
authors.initials: Z
authors.lastname: Cui
authors.affiliation: Yuhang Extension and Service Center of Agriculture Technical, Hangzhou 311100, China. wzli@126.com.
authors.forename: Guoqiang
authors.initials: G
authors.lastname: Jin
authors.affiliation: State Key Laboratory of Rice Biology, Institute of Biotechnology, Zhejiang University, Hangzhou 310058, China. libin0571@zju.edu.cn.
authors.forename: Bin
authors.initials: B
authors.lastname: Li
authors.affiliation: State Key Laboratory of Rice Biology, Institute of Biotechnology, Zhejiang University, Hangzhou 310058, China. k_khan_2009@yahoo.com.
authors.forename: Kaleem Ullah
authors.initials: KU
authors.lastname: Kakar
authors.affiliation: State Key Laboratory of Rice Biology, Institute of Biotechnology, Zhejiang University, Hangzhou 310058, China. smro59@gmail.com.
authors.forename: Mohammad Reza
authors.initials: MR
authors.lastname: Ojaghian
authors.affiliation: State Key Laboratory Breeding Base for Zhejiang Sustainable Plant Pest and Disease Control, Key Laboratory of Detection for Pesticide Residues, Ministry of Agriculture, Zhejiang Academy of Agricultural Sciences, Hangzhou 310021, China. ylwang88@aliyun.com.
authors.forename: Yangli
authors.initials: Y
authors.lastname: Wang
authors.affiliation: State Key Laboratory of Rice Biology, Institute of Biotechnology, Zhejiang University, Hangzhou 310058, China. glxie@zju.edu.cn.
authors.forename: Guanlin
authors.initials: G
authors.lastname: Xie
authors.affiliation: State Key Laboratory Breeding Base for Zhejiang Sustainable Plant Pest and Disease Control, Key Laboratory of Detection for Pesticide Residues, Ministry of Agriculture, Zhejiang Academy of Agricultural Sciences, Hangzhou 310021, China. sungc01@sina.com.
authors.forename: Guochang
authors.initials: G
authors.lastname: Sun
mesh_terms: D042621:Comamonadaceae / Q000235:genetics*; D004777:Environment; D015964:Gene Expression Regulation, Bacterial; D059647:Gene-Environment Interaction; D005798:Genes, Bacterial; D050296:Microbial Viability / Q000235:genetics*; D025341:Principal Component Analysis; D013312:Stress, Physiological; D000069376:Type VI Secretion Systems / Q000235:genetics*
chemical_list: D000069376:Type VI Secretion Systems
keywords: T6SS gene expression; co-culture; gene knockout; in vivo; principle component analysis; stress