title: Data for comparative proteomics of ovaries from five non-model, crustacean amphipods.
abstract: Ovaries were taken from five sexually mature amphipods: Gammarus fossarum, Gammarus pulex, Gammarus roeseli, Hyallela azteca and Parhyale hawaiensis. The soluble proteome extracted from individual pair of ovaries from five biological replicates was trypsin digested and the resulting peptides were analyzed by high resolution tandem mass spectrometry. The spectra were assigned with four protein sequence databases with different specificities: a RNAseq-derived G. fossarum database; a RNAseq-derived P. hawaiensis database; both originating from ovaries transcriptome; the Daphnia pulex database derived from whole-genome sequencing and the NCBInr database. The best interpretation was obtained for most animals with the specific RNA-seq protein database previously established by means of RNAseq carried out on G. fossarum. Proteins identified in the five amphipod species allow defining the core-proteome of female reproductive tissues of the Senticaudata suborder. The data accompanying the manuscript describing the database searches and comparative analysis Trapp et al., 2015 [1] have been deposited to the ProteomeXchange with identifiers PXD002253 (G. fossarum), PXD002254 (G. pulex), PXD002255 (G. roeseli), PXD002256 (H. Azteca), and PXD002257 (P. hawaiensis).
authors.affiliation: Irstea, Unité de Recherche MALY, Laboratoire d׳écotoxicologie, CS70077, F-69626 Villeurbanne, France ; CEA-Marcoule, DSV/IBITEC-S/SPI/Li2D, Laboratory "Innovative Technologies for Detection and Diagnostic", BP 17171, F-30200 Bagnols-sur-Cèze, France.
authors.forename: Judith
authors.initials: J
authors.lastname: Trapp
authors.affiliation: CEA-Marcoule, DSV/IBITEC-S/SPI/Li2D, Laboratory "Innovative Technologies for Detection and Diagnostic", BP 17171, F-30200 Bagnols-sur-Cèze, France.
authors.forename: Christine
authors.initials: C
authors.lastname: Almunia
authors.affiliation: CEA-Marcoule, DSV/IBITEC-S/SPI/Li2D, Laboratory "Innovative Technologies for Detection and Diagnostic", BP 17171, F-30200 Bagnols-sur-Cèze, France.
authors.forename: Jean-Charles
authors.initials: JC
authors.lastname: Gaillard
authors.affiliation: CEA-Marcoule, DSV/IBITEC-S/SPI/Li2D, Laboratory "Innovative Technologies for Detection and Diagnostic", BP 17171, F-30200 Bagnols-sur-Cèze, France.
authors.forename: Olivier
authors.initials: O
authors.lastname: Pible
authors.affiliation: Irstea, Unité de Recherche MALY, Laboratoire d׳écotoxicologie, CS70077, F-69626 Villeurbanne, France.
authors.forename: Arnaud
authors.initials: A
authors.lastname: Chaumot
authors.affiliation: Irstea, Unité de Recherche MALY, Laboratoire d׳écotoxicologie, CS70077, F-69626 Villeurbanne, France.
authors.forename: Olivier
authors.initials: O
authors.lastname: Geffard
authors.affiliation: CEA-Marcoule, DSV/IBITEC-S/SPI/Li2D, Laboratory "Innovative Technologies for Detection and Diagnostic", BP 17171, F-30200 Bagnols-sur-Cèze, France.
authors.forename: Jean
authors.initials: J
authors.lastname: Armengaud