title: The impact of the Tekay chromoviral elements on genome organisation and evolution of Anemone s.l. (Ranunculaceae).
abstract: We studied the highly abundant chromoviral Tekay clade in species from three sister genera - Anemone, Pulsatilla and Hepatica (Ranunculaceae). With this clade, we performed a concomitant survey of its phylogenetic diversity, chromosomal organisation and transcriptional activity in Anemone s.l. in order to investigate dynamics of the Tekay elements at a finer scale than previously achieved in this or any other flowering clade. The phylogenetic tree built from Tekay sequences conformed to expected evolutionary relationships of the species; exceptions being A. nemorosa and A. sylvestris, which appeared more closely related that expected, and we invoke hybridisation events to explain the observed topology. The separation of elements into six clusters could be explained by episodic bursts of activity since divergence from a common ancestor at different points in their respective evolutionary histories. In Anemone s.l. the Tekay elements do not have a preferential position on chromosomes, i.e. they can have a: (i) centromeric/pericentromeric position; (ii) interstitial position in DAPI-positive AT-rich heterochromatic regions; can be (iii) dispersed throughout chromosomes; or even (iv) be absent from large heterochromatic blocks. Widespread transcriptional activity of the Tekay elements in Anemone s.l. taxa indicate that some copies of Tekay elements could still be active in this plant group, contributing to genome evolution and speciation within Anemone s.l. Identification of Tekay elements in Anemone s.l. provides valuable information for understanding how different localisation patterns might help to facilitate plant genome organisation in a structural and functional manner.
authors.affiliation: Division of Biology, Department of Molecular Biology, Faculty of Science, University of Zagreb, Zagreb, Croatia.
authors.forename: J
authors.initials: J
authors.lastname: Mlinarec
authors.affiliation: Division of Biology, Zoology Department, Faculty of Science, University of Zagreb, Zagreb, Croatia.
authors.forename: D
authors.initials: D
authors.lastname: Franjević
authors.affiliation: Division of Biology, Department of Molecular Biology, Faculty of Science, University of Zagreb, Zagreb, Croatia.
authors.forename: J
authors.initials: J
authors.lastname: Harapin
authors.affiliation: Division of Biology, Department of Molecular Biology, Faculty of Science, University of Zagreb, Zagreb, Croatia.
authors.forename: V
authors.initials: V
authors.lastname: Besendorfer
mesh_terms: D031883:Anemone / Q000235:genetics*; D001483:Base Sequence; D005075:Biological Evolution; D032461:Chromosomes, Plant; D018745:Genome, Plant; D017404:In Situ Hybridization, Fluorescence; D010802:Phylogeny; D060888:Real-Time Polymerase Chain Reaction; D018626:Retroelements / Q000235:genetics*; D014158:Transcription, Genetic
chemical_list: D018626:Retroelements
keywords: Anemone; Pulsatilla; chromoviruses; fluorescence in situ hybridisation; polyploids; retrotransposons