title: HSP70 mediates survival in apoptotic cells-Boolean network prediction and experimental validation.
abstract: Neuronal stress or injury results in the activation of proteins, which regulate the balance between survival and apoptosis. However, the complex mechanism of cell signaling involving cell death and survival, activated in response to cellular stress is not yet completely understood. To bring more clarity about these mechanisms, a Boolean network was constructed that represented the apoptotic pathway in neuronal cells. FasL and neurotrophic growth factor (NGF) were considered as inputs in the absence and presence of heat shock proteins known to shift the balance toward survival by rescuing pro-apoptotic cells. The probabilities of survival, DNA repair and apoptosis as cellular fates, in the presence of either the growth factor or FasL, revealed a survival bias encoded in the network. Boolean predictions tested by measuring the mRNA level of caspase-3, caspase-8, and BAX in neuronal Neuro2a (N2a) cell line with NGF and FasL as external input, showed positive correlation with the observed experimental results for survival and apoptotic states. It was observed that HSP70 contributed more toward rescuing cells from apoptosis in comparison to HSP27, HSP40, and HSP90. Overexpression of HSP70 in N2a transfected cells showed reversal of cellular fate from FasL-induced apoptosis to survival. Further, the pro-survival role of the proteins BCL2, IAP, cFLIP, and NFκB determined by vertex perturbation analysis was experimentally validated through protein inhibition experiments using EM20-25, Embelin and Wedelolactone, which resulted in 1.27-, 1.26-, and 1.46-fold increase in apoptosis of N2a cells. The existence of a one-to-one correspondence between cellular fates and attractor states shows that Boolean networks may be employed with confidence in qualitative analytical studies of biological networks.
authors.affiliation: Computational Biology, Kusuma School of Biological Sciences, Indian Institute of Technology Delhi New Delhi, India.
authors.forename: Suhas V
authors.initials: SV
authors.lastname: Vasaikar
authors.affiliation: National Brain Research Centre Manesar, India.
authors.forename: Sourish
authors.initials: S
authors.lastname: Ghosh
authors.affiliation: Computational Biology, Kusuma School of Biological Sciences, Indian Institute of Technology Delhi New Delhi, India.
authors.forename: Priyam
authors.initials: P
authors.lastname: Narain
authors.affiliation: National Brain Research Centre Manesar, India.
authors.forename: Anirban
authors.initials: A
authors.lastname: Basu
authors.affiliation: Computational Biology, Kusuma School of Biological Sciences, Indian Institute of Technology Delhi New Delhi, India.
authors.forename: James
authors.initials: J
authors.lastname: Gomes
keywords: Boolean network; HSP40; HSP70; HSP90; apoptosis; cellular fate; neuronal stress