title: Analysis of the pH-dependent stability and millisecond folding kinetics of horse cytochrome c.
abstract: This paper analyzes the effect of pH on thermodynamic stability and folding kinetics of horse cytochrome c (cyt c). Analysis of equilibrium unfolding transitions of Ferricyt c and Ferrocyt c measured between pH 3.0 and pH 13.0 reveal that these proteins have maximum thermodynamic stability between pH 8.0 and pH 9.5. Theoretically predicted pH-dependent electrostatic unfolding energy of Ferricyt c also supports this result. Unfolded Ferrocyt c in refolding buffer at pH 7.0 and pH 12.7 refolds rapidly to native state. Between pH 7.0 and pH 12.7, the activation free energy barrier for folding of Ferrocyt c varies by <1.0 kcal mol(-1) while the folding free energy, which is measured by two-state analysis of equilibrium unfolding transitions of Ferrocyt c varies by 8.0 kcal mol(-1). This finding reveals that the large disparity in thermodynamic stability between pH 7.0 and pH 12.7 is not strongly reflected in the refolding rates. The Wyman Tanford linkage relation was used to calculate the β(pH)-value for folding of Ferrocyt c, which is <0.1 between pH 7.0 and pH 12.7, indicating that the electrostatic interactions are weakly formed in transition state and exhibit a very small effect on the folding kinetics.
authors.affiliation: School of Chemistry and Biochemistry, Thapar University, Patiala 147004, India.
authors.forename: Rishu
authors.initials: R
authors.lastname: Jain
authors.affiliation: School of Chemistry and Biochemistry, Thapar University, Patiala 147004, India.
authors.forename: Rajesh
authors.initials: R
authors.lastname: Kumar
authors.affiliation: School of Chemistry and Biochemistry, Thapar University, Patiala 147004, India.
authors.forename: Sandeep
authors.initials: S
authors.lastname: Kumar
authors.affiliation: School of Chemistry and Biochemistry, Thapar University, Patiala 147004, India.
authors.forename: Ritika
authors.initials: R
authors.lastname: Chhabra
authors.affiliation: School of Chemistry and Biochemistry, Thapar University, Patiala 147004, India.
authors.forename: Mukesh Chand
authors.initials: MC
authors.lastname: Agarwal
authors.affiliation: School of Chemistry and Biochemistry, Thapar University, Patiala 147004, India. Electronic address: rajesh.kumar@thapar.edu.
authors.forename: Rajesh
authors.initials: R
authors.lastname: Kumar
mesh_terms: D000595:Amino Acid Sequence; D000818:Animals; D045304:Cytochromes c / Q000737:chemistry* / Q000302:isolation & purification; D019791:Guanidine / Q000737:chemistry; D006736:Horses; D006863:Hydrogen-Ion Concentration; D007700:Kinetics; D008958:Models, Molecular; D008969:Molecular Sequence Data; D009206:Myocardium / Q000737:chemistry* / Q000201:enzymology; D011489:Protein Denaturation; D017510:Protein Folding; D055550:Protein Stability; D017433:Protein Structure, Secondary; D017434:Protein Structure, Tertiary; D058767:Protein Unfolding; D055672:Static Electricity; D013816:Thermodynamics; D014508:Urea / Q000737:chemistry
chemical_list: D014508:Urea; D045304:Cytochromes c; D019791:Guanidine
keywords: Electrostatic interactions; Protein folding; Thermodynamic stability; Wyman–Tanford linkage relation