title: Fully automatic scheme for measuring liver volume in 3D MR images.
abstract: In this paper, a fully automatic scheme for measuring liver volume in 3D MR images was developed. The proposed MRI liver volumetry scheme consisted of four main stages. First, the preprocessing stage was applied to T1-weighted MR images of the liver in the portal-venous phase to reduce noise. The histogram of the 3D image was determined, and the second-to-last peak of the histogram was calculated using a neural network. Thresholds, which are determined based upon the second-to-last peak, were used to generate a thresholding image. This thresholding image was refined using a gradient magnitude image. The morphological and connected component operations were applied to the refined image to generate the rough shape of the liver. A 3D geodesic-active-contour segmentation algorithm refined the rough shape in order to more precisely determine the liver boundaries. The liver volumes determined by the proposed automatic volumetry were compared to those manually traced by radiologists; these manual volumes were used as a "gold standard." The two volumetric methods reached an excellent agreement. The Dice overlap coefficient and the average accuracy were 91.0 ±2.8% and 99.0 ±0.4%, respectively. The mean processing time for the proposed automatic scheme was 1.02 ±0.08 min (CPU: Intel, core i7, 2.8GHz), whereas that of the manual volumetry was 24.3 ±3.7 min (p < 0.001).
authors.affiliation: Faculty of Information Technology, Industrial University of Ho Chi Minh City, Viet Nam.|Faculty of Information Technology, University of Science, Ho Chi Minh City, Viet Nam.
authors.forename: Trong-Ngoc
authors.initials: TN
authors.lastname: Le
authors.affiliation: Faculty of Information Technology, University of Science, Ho Chi Minh City, Viet Nam.
authors.forename: Pham The
authors.initials: PT
authors.lastname: Bao
authors.affiliation: Faculty of Information Technology, Industrial University of Ho Chi Minh City, Viet Nam.
authors.forename: Hieu Trung
authors.initials: HT
authors.lastname: Huynh
mesh_terms: D000465:Algorithms; D003198:Computer Simulation; D006801:Humans; D007089:Image Enhancement / Q000379:methods; D007090:Image Interpretation, Computer-Assisted / Q000379:methods*; D021621:Imaging, Three-Dimensional / Q000379:methods*; D008099:Liver / Q000033:anatomy & histology* / Q000502:physiology; D008279:Magnetic Resonance Imaging / Q000379:methods*; D008954:Models, Biological; D009929:Organ Size / Q000502:physiology; D010363:Pattern Recognition, Automated / Q000379:methods*
keywords: Liver volumetry; MR volumetry; magnetic resonance imaging; resection; transplantation