title: Diversity of alkane hydroxylase genes on the rhizoplane of grasses planted in petroleum-contaminated soils.
abstract: The study investigated the diversity and genotypic features of alkane hydroxylase genes on rhizoplanes of grasses planted in artificial petroleum-contaminated soils to acquire new insights into the bacterial communities responsible for petroleum degradation in phytoremediation. Four types of grass (Cynodon dactylon, two phenotypes of Zoysia japonica, and Z. matrella) were used. The concentrations of total petroleum hydrocarbon effectively decreased in the grass-planted systems compared with the unplanted system. Among the representative alkane hydroxylase genes alkB, CYP153, almA and ladA, the first two were detected in this study, and the genotypes of both genes were apparently different among the systems studied. Their diversity was also higher on the rhizoplanes of the grasses than in unplanted oil-contaminated soils. Actinobacteria-related genes in particular were among the most diverse alkane hydroxylase genes on the rhizoplane in this study, indicating that they are one of the main contributors to degrading alkanes in oil-contaminated soils during phytoremediation. Actinobacteria-related alkB genes and CYP153 genes close to the genera Parvibaculum and Aeromicrobium were found in significant numbers on the rhizoplanes of grasses. These results suggest that the increase in diversity and genotype differences of the alkB and CYP153 genes are important factors affecting petroleum hydrocarbon-degrading ability during phytoremediation.
authors.affiliation: National Institute for Environmental Studies (NIES), Center for Regional Environmental Research, 16-2 Onogawa, Tsukuba, 305-8506 Japan ; National Institute for Environmental Studies (NIES), Center for Environmental Biology and Ecosystem Studies, 16-2 Onogawa, Tsukuba, 305-8506 Japan.
authors.forename: Shun
authors.initials: S
authors.lastname: Tsuboi
authors.affiliation: National Institute for Environmental Studies (NIES), Center for Regional Environmental Research, 16-2 Onogawa, Tsukuba, 305-8506 Japan.
authors.forename: Shigeki
authors.initials: S
authors.lastname: Yamamura
authors.affiliation: Faculty of Life and Environmental Sciences (Bioindustrial Sciences), University of Tsukuba, 1-1-1 Tennodai, Tsukuba, 305-8572 Japan.
authors.forename: Toshiaki
authors.initials: T
authors.lastname: Nakajima-Kambe
authors.affiliation: National Institute for Environmental Studies (NIES), Center for Regional Environmental Research, 16-2 Onogawa, Tsukuba, 305-8506 Japan.
authors.forename: Kazuhiro
authors.initials: K
authors.lastname: Iwasaki
keywords: Bacterial alkane hydroxylase genes; Culture-independent molecular approaches; Grass roots; Petroleum contamination; Phytoremediation