title: An analytical correlated random walk model and its application to understand subdiffusion in crowded environment.
abstract: Subdiffusion in crowded environment such as movement of macromolecule in a living cell has often been observed experimentally. The primary reason for subdiffusion is volume exclusion by the crowder molecules. However, other effects such as hydrodynamic interaction may also play an important role. Although there are a large number of computer simulation studies on understanding molecular crowding, there is a lack of theoretical models that can be connected to both experiment and simulation. In the current work, we have formulated a one-dimensional correlated random walk model by connecting this to the motion in a crowded environment. We have found the exact solution of the probability distribution function of the model by solving it analytically. The parameters of our model can be obtained either from simulation or experiment. It has been shown that this analytical model captures some of the general features of diffusion in crowded environment as given in the previous literature and its prediction for transient subdiffusion closely matches the observations of a previous study of computer simulation of Escherichia coli cytoplasm. It is likely that this model will open up more development of theoretical models in this area.
authors.affiliation: School of Computational and Integrative Sciences, Jawaharlal Nehru University, New Delhi 110067, India.
authors.forename: Sabeeha
authors.initials: S
authors.lastname: Hasnain
authors.affiliation: School of Computational and Integrative Sciences, Jawaharlal Nehru University, New Delhi 110067, India.
authors.forename: Pradipta
authors.initials: P
authors.lastname: Bandyopadhyay
mesh_terms: D003198:Computer Simulation; D003593:Cytoplasm / Q000737:chemistry*; D004058:Diffusion; D004777:Environment; D004926:Escherichia coli / Q000737:chemistry*; D057446:Hydrodynamics; D046911:Macromolecular Substances / Q000737:chemistry*; D008956:Models, Chemical
chemical_list: D046911:Macromolecular Substances