title: [Analysis of the Nucleotide Sequence of a Cryptic Plasmid from Yersinia pestis Strains in the Central Caucasian High-Mountain Plague Focus].
abstract: An analysis of a 5.4-kbp cryptic plasmid detected in the course of whole-genome sequencing of the Yersinia pestis medieval biovar isolated in the Russian Central Caucasian high-mountain plague focus was performed. The identification of the nucleotide sequence of this cryptic plasmid and its structural and functional analysis revealed that it contained eight open reading frames, among which the following genes were identified: the rep gene of a replication protein, the virB6 gene of a type-IV secretion system inner membrane protein, the virB5gene of the type-IV secretion system minor pilin, and a number of genes probably associated with secretion and transport. A general analysis of the pCKF plasmid DNA showed that the adenine content was 28.34%, the cytosine content was 20.5%, the guanine content was 17.87%, and that of thymine was 33.28%, while the total G+C content appeared to be 38.38%. The G+C content of the chromosome of the Y pestis strain C-627 is 47.6%, which indicates that the pCKF plasmid was obtained from a microorganism equally-phylogenetically distant from the Yersinia bacteria andany other bacteria from the Enterobacteriaceae family. A comparison of the amino acid sequences.of hypothetical proteins encoded by pCKF plasmid with analogous proteins encoded by other bacteria was carried out. The possible contribution of the pCKF plasmid to the maintenance of the most ancient known phylogenetic line of Y. pestis medieval biovar, 2.MEDO, was discussed.
authors.forename: E G
authors.initials: EG
authors.lastname: Oglodin
authors.forename: A V
authors.initials: AV
authors.lastname: Cherkasov
authors.forename: G A
authors.initials: GA
authors.lastname: Eroshenko
authors.forename: G N
authors.initials: GN
authors.lastname: Odinokov
authors.forename: N Yu
authors.initials: NY
authors.lastname: Shavina
authors.forename: L A
authors.initials: LA
authors.lastname: Novichkova
authors.forename: V V
authors.initials: VV
authors.lastname: Kutyrev
mesh_terms: D001426:Bacterial Proteins / Q000235:genetics; D001482:Base Composition; D006801:Humans; D008969:Molecular Sequence Data; D016366:Open Reading Frames; D010802:Phylogeny; D010930:Plague / Q000382:microbiology; D010957:Plasmids / Q000235:genetics*; D012426:Russia; D015010:Yersinia pestis / Q000235:genetics* / Q000472:pathogenicity
chemical_list: D001426:Bacterial Proteins