title: Control regions for chromosome replication are conserved with respect to sequence and location among Escherichia coli strains.
abstract: In Escherichia coli, chromosome replication is initiated from oriC by the DnaA initiator protein associated with ATP. Three non-coding regions contribute to the activity of DnaA. The datA locus is instrumental in conversion of DnaA(ATP) to DnaA(ADP) (datA dependent DnaA(ATP) hydrolysis) whereas DnaA rejuvenation sequences 1 and 2 (DARS1 and DARS2) reactivate DnaA(ADP) to DnaA(ATP). The structural organization of oriC, datA, DARS1, and DARS2 were found conserved among 59 fully sequenced E. coli genomes, with differences primarily in the non-functional spacer regions between key protein binding sites. The relative distances from oriC to datA, DARS1, and DARS2, respectively, was also conserved despite of large variations in genome size, suggesting that the gene dosage of either region is important for bacterial growth. Yet all three regions could be deleted alone or in combination without loss of viability. Competition experiments during balanced growth in rich medium and during mouse colonization indicated roles of datA, DARS1, and DARS2 for bacterial fitness although the relative contribution of each region differed between growth conditions. We suggest that this fitness advantage has contributed to conservation of both sequence and chromosomal location for datA, DARS1, and DARS2.
authors.affiliation: Department of Biology, Section for Functional Genomics and Center for Bacterial Stress Response and Persistence, University of Copenhagen Copenhagen, Denmark ; Department of Microbiology and Infection Control, Statens Serum Institut Copenhagen, Denmark.
authors.forename: Jakob
authors.initials: J
authors.lastname: Frimodt-Møller
authors.affiliation: Department of Biology, Section for Functional Genomics and Center for Bacterial Stress Response and Persistence, University of Copenhagen Copenhagen, Denmark.
authors.forename: Godefroid
authors.initials: G
authors.lastname: Charbon
authors.affiliation: Department of Microbiology and Infection Control, Statens Serum Institut Copenhagen, Denmark.
authors.forename: Karen A
authors.initials: KA
authors.lastname: Krogfelt
authors.affiliation: Department of Biology, Section for Functional Genomics and Center for Bacterial Stress Response and Persistence, University of Copenhagen Copenhagen, Denmark.
authors.forename: Anders
authors.initials: A
authors.lastname: Løbner-Olesen
keywords: DARS1 and DARS2; E. coli; datA; fitness in vitro and in vivo; non-coding replication control regions; oriC