title: Comparative Evaluation of Three Nucleic Acid-Based Assays for BK Virus Quantification.
abstract: With the growing importance of BK virus (BKV), effective and efficient screening for BKV replication in plasma and urine samples is very important for monitoring renal transplant and hematopoietic stem cell transplant recipients, who are at increased risk of BKV-associated diseases. However, recent assays proposed by many manufacturers have not been tested, and the available tests have not been standardized. The aim of the present study was to evaluate and compare the performances of three commercially available kits, R-gene, GeneProof, and RealStar, on plasma and urine specimens from patients infected with various genotypes and to determine the correlations with the results from a reference laboratory. A qualitatively excellent global agreement (96.8%) was obtained. RealStar PCR tended to give a higher sensitivity, especially for subtype Ib1 samples. Comparison of 30 plasma samples and 53 urine samples showed a good agreement between the three assays, with Spearman's Rho correlation coefficient values falling between 0.92 and 0.98 (P < 0.001). Moreover, a perfect correlation was obtained for comparison of the assay performances with the AcroMetrix BKV panel (P < 0.001 for all comparisons). According to Bland-Altman analysis, more than 95% (240/249 comparisons) of sample comparisons were situated in the range of the mean ± 2 standard deviations (SD). The greatest variability between assays was observed for 10.2% of subtype Ib2 samples, with differences of >1 log10 copies/ml. In conclusion, this study demonstrated the reliable and comparable performances of the R-gene, GeneProof, and RealStar real-time PCR systems for quantification of BKV in urine and plasma samples. All three real-time PCR assays are appropriate for screening of BKV replication in patients.
authors.affiliation: Department of Virology, Amiens University Medical Center, Amiens, France; Virology Research Unit, EA 4294, Jules Verne University of Picardie, Amiens, France.
authors.forename: Veronique
authors.initials: V
authors.lastname: Descamps
authors.affiliation: Department of Virology, Amiens University Medical Center, Amiens, France; Virology Research Unit, EA 4294, Jules Verne University of Picardie, Amiens, France.
authors.forename: Elodie
authors.initials: E
authors.lastname: Martin
authors.affiliation: Department of Virology, Amiens University Medical Center, Amiens, France; Virology Research Unit, EA 4294, Jules Verne University of Picardie, Amiens, France.
authors.forename: Virginie
authors.initials: V
authors.lastname: Morel
authors.affiliation: Department of Virology, Amiens University Medical Center, Amiens, France; Virology Research Unit, EA 4294, Jules Verne University of Picardie, Amiens, France.
authors.forename: Catherine
authors.initials: C
authors.lastname: François
authors.affiliation: Department of Virology, Amiens University Medical Center, Amiens, France; Virology Research Unit, EA 4294, Jules Verne University of Picardie, Amiens, France.
authors.forename: François
authors.initials: F
authors.lastname: Helle
authors.affiliation: Department of Virology, Amiens University Medical Center, Amiens, France; Virology Research Unit, EA 4294, Jules Verne University of Picardie, Amiens, France.
authors.forename: Gilles
authors.initials: G
authors.lastname: Duverlie
authors.affiliation: Department of Virology, Amiens University Medical Center, Amiens, France; Virology Research Unit, EA 4294, Jules Verne University of Picardie, Amiens, France.
authors.forename: Sandrine
authors.initials: S
authors.lastname: Castelain
authors.affiliation: Department of Virology, Amiens University Medical Center, Amiens, France; Virology Research Unit, EA 4294, Jules Verne University of Picardie, Amiens, France etienne.brochot@u-picardie.fr.
authors.forename: Etienne
authors.initials: E
authors.lastname: Brochot
mesh_terms: D000328:Adult; D000368:Aged; D001739:BK Virus / Q000235:genetics* / Q000302:isolation & purification*; D005260:Female; D006801:Humans; D008297:Male; D008875:Middle Aged; D025202:Molecular Diagnostic Techniques / Q000379:methods*; D010949:Plasma / Q000821:virology*; D027601:Polyomavirus Infections / Q000821:virology; D014556:Urine / Q000821:virology*; D019562:Viral Load / Q000379:methods*