title: Approach for classification and taxonomy within family Rickettsiaceae based on the Formal Order Analysis.
abstract: Genome sequences of 36 Rickettsia and Orientia were analyzed using Formal Order Analysis (FOA). This approach takes into account arrangement of nucleotides in each sequence. A numerical characteristic, the average distance (remoteness) - "g" was used to compare of genomes. Our results corroborated previous separation of three groups within the genus Rickettsia, including typhus group, classic spotted fever group, and the ancestral group and Orientia as a separate genus. Rickettsia felis URRWXCal2 and R. akari Hartford were not in the same group based on FOA, therefore designation of a so-called transitional Rickettsia group could not be confirmed with this approach.
authors.affiliation: N.F. Gamaleya FRCEM, Gamaleya Str., 18, Moscow, 123098, Russia. Electronic address: stanislav63@yahoo.com.
authors.forename: S
authors.initials: S
authors.lastname: Shpynov
authors.affiliation: OmSTU, Omsk, Russia.
authors.forename: N
authors.initials: N
authors.lastname: Pozdnichenko
authors.affiliation: OmSTU, Omsk, Russia.
authors.forename: A
authors.initials: A
authors.lastname: Gumenuk
mesh_terms: D015373:Bacterial Typing Techniques; D016680:Genome, Bacterial / Q000235:genetics*; D012285:Orientia tsutsugamushi / Q000145:classification* / Q000235:genetics*; D010802:Phylogeny; D012281:Rickettsia / Q000145:classification* / Q000235:genetics*
keywords: Average distance (remoteness); Classification; Formal Order Analysis; Genome; Rickettsia; Taxonomy