title: Mosaic deletion of 20pter due to rescue by somatic recombination.
abstract: We report on a unique case of a mosaic 20pter-p13 deletion due to a somatic repair event identified by allele differentiating single nucleotide polymorphism (SNP) probes on chromosomal microarray. Small terminal deletions of 20p have been reported in a few individuals and appear to result in a variable phenotype. This patient was a 24-month-old female who presented with failure to thrive and speech delay. Chromosomal microarray analysis (CMA) performed on peripheral blood showed a 1.6 Mb deletion involving the terminus of 20p (20pter-20p13). This deletion appeared mosaic by CMA and this suspicion was confirmed by fluorescence in situ hybridization (FISH) analysis. Additionally, the deletion interval at 20p was directly adjacent to 15 Mb of mosaic copy-neutral loss of heterozygosity (LOH). The pattern of SNP probes was highly suggestive of a somatic repair event that resulted in rescue of the deleted region using the non-deleted homologue as a template. Structural mosaicism is rare and most often believed to be due to a postzygotic mechanism. This case demonstrates the additional utility of allele patterns to help distinguish mechanisms and in this case identified the possibility of either a post-zygotic repair of a germline deletion or a post-zygotic deletion with somatic recombination repair in a single step.
authors.affiliation: Lineagen, Inc., Salt Lake City, Utah.
authors.forename: Megan M
authors.initials: MM
authors.lastname: Martin
authors.affiliation: Lineagen, Inc., Salt Lake City, Utah.
authors.forename: Rena J
authors.initials: RJ
authors.lastname: Vanzo
authors.affiliation: Lineagen, Inc., Salt Lake City, Utah.
authors.forename: Mallory R
authors.initials: MR
authors.lastname: Sdano
authors.affiliation: Lineagen, Inc., Salt Lake City, Utah.
authors.forename: Adrianne L
authors.initials: AL
authors.lastname: Baxter
authors.affiliation: Department of Pediatrics and Pathology, University of Utah, Salt Lake City, Utah.|ARUP Laboratories, Salt Lake City, Utah.
authors.forename: Sarah T
authors.initials: ST
authors.lastname: South
mesh_terms: D002675:Child, Preschool; D002890:Chromosomes, Human, Pair 20 / Q000235:genetics*; D005183:Failure to Thrive / Q000235:genetics*; D005260:Female; D006801:Humans; D017404:In Situ Hybridization, Fluorescence; D007805:Language Development Disorders / Q000235:genetics*; D058627:Megalencephaly / Q000235:genetics; D009030:Mosaicism; D020411:Oligonucleotide Array Sequence Analysis; D020641:Polymorphism, Single Nucleotide / Q000235:genetics; D011995:Recombination, Genetic / Q000235:genetics; D017384:Sequence Deletion / Q000235:genetics*
keywords: 20p terminal deletion; chromosomal mosaicism; del 20pter-p13; microarray analysis; single nucleotide polymorphism array; somatic repair