title: Open Environment for Multimodal Interactive Connectivity Visualization and Analysis.
abstract: Brain connectivity investigations are becoming increasingly multimodal and they present challenges for quantitatively characterizing and interactively visualizing data. In this study, we present a new set of network-based software tools for combining functional and anatomical connectivity from magnetic resonance imaging (MRI) data. The computational tools are available as part of Functional and Tractographic Connectivity Analysis Toolbox (FATCAT), a toolbox that interfaces with Analysis of Functional NeuroImages (AFNI) and SUrface MApping (SUMA) for interactive queries and visualization. This includes a novel, tractographic mini-probabilistic approach to improve streamline tracking in networks. We show how one obtains more robust tracking results for determining white matter connections by utilizing the uncertainty of the estimated diffusion tensor imaging (DTI) parameters and a few Monte Carlo iterations. This allows for thresholding based on the number of connections between target pairs to reduce the presence of tracts likely due to noise. To assist users in combining data, we describe an interface for navigating and performing queries in two-dimensional and three-dimensional data defined over voxel, surface, tract, and graph domains. These varied types of information can be visualized simultaneously and the queries performed interactively using SUMA and AFNI. The methods have been designed to increase the user's ability to visualize and combine functional MRI and DTI modalities, particularly in the context of single-subject inferences (e.g., in deep brain stimulation studies). Finally, we present a multivariate framework for statistically modeling network-based features in group analysis, which can be implemented for both functional and structural studies.
authors.affiliation: 1 MRC/UCT Medical Imaging Research Unit, Department of Human Biology, Faculty of Health Sciences, University of Cape Town , Muizenberg, South Africa .|2 African Institute for Mathematical Sciences , Muizenberg, South Africa .
authors.forename: Paul A
authors.initials: PA
authors.lastname: Taylor
authors.affiliation: 3 Scientific and Statistical Computing Core, National Institute of Mental Health, National Institutes of Health , Bethesda, Maryland.
authors.forename: Gang
authors.initials: G
authors.lastname: Chen
authors.affiliation: 3 Scientific and Statistical Computing Core, National Institute of Mental Health, National Institutes of Health , Bethesda, Maryland.
authors.forename: Robert W
authors.initials: RW
authors.lastname: Cox
authors.affiliation: 3 Scientific and Statistical Computing Core, National Institute of Mental Health, National Institutes of Health , Bethesda, Maryland.
authors.forename: Ziad S
authors.initials: ZS
authors.lastname: Saad
mesh_terms: D001921:Brain / Q000502:physiology; D001931:Brain Mapping / Q000379:methods; D063132:Connectome / Q000379:methods*; D056324:Diffusion Tensor Imaging / Q000379:methods; D006801:Humans; D007091:Image Processing, Computer-Assisted / Q000379:methods*; D008279:Magnetic Resonance Imaging / Q000379:methods; D064847:Multimodal Imaging / Q000379:methods*; D012984:Software; D066127:White Matter
keywords: diffusion tensor imaging; functional MRI; functional connectivity; resting state FMRI; structural connectivity; tractography