title: The complexity of bacterial transcriptomes.
abstract: For eukaryotes there seems to be no doubt that differences on the trancriptomic level substantially contribute to the process of species diversification, whereas for bacteria this is thought to be less important. Recent years saw a significant increase in full transcriptome studies for bacteria, which provided deep insight into the architecture of bacterial transcriptomes. Most notably, it became evident that, in contrast to previous scientific consensus, bacterial transcriptomes are quite complex. There exist a large number of cis-antisense RNAs, non-coding RNAs, overlapping transcripts and RNA elements that regulate transcription, such as riboswitches. Furthermore, processing and degradation of RNA has gained interest, because it has a significant impact on the composition of the transcriptome. In this review, we summarize recent findings and put them into a broader context with respect to the complexity of bacterial transcriptomes and its putative biological meanings.
authors.affiliation: University of Freiburg, Faculty of Biology, Computational Transcriptomics, Schänzlestr. 1, 79104 Freiburg, Germany. Electronic address: damir.stazic@biologie.uni-freiburg.de.
authors.forename: D
authors.initials: D
authors.lastname: Stazic
authors.affiliation: University of Freiburg, Faculty of Biology, Computational Transcriptomics, Schänzlestr. 1, 79104 Freiburg, Germany. Electronic address: bjoern.voss@biologie.uni-freiburg.de.
authors.forename: B
authors.initials: B
authors.lastname: Voß
mesh_terms: D015964:Gene Expression Regulation, Bacterial; D016372:RNA, Antisense; D012329:RNA, Bacterial; D022661:RNA, Untranslated; D014158:Transcription, Genetic; D059467:Transcriptome
chemical_list: D016372:RNA, Antisense; D012329:RNA, Bacterial; D022661:RNA, Untranslated
keywords: Antisense RNA; Non-coding RNA; RNA degradation; RNAse; Transcriptome