title: HapFlow: visualizing haplotypes in sequencing data.
abstract: CONCLUSIONS
  HapFlow is a python application for visualizing haplotypes present in sequencing data. It identifies variant profiles present and reads and creates an abstract visual representation of these profiles to make haplotypes easier to identify.
  
  
  METHODS
  HapFlow is freely available (under a GPL license) for download (for Mac OS X, Unix and Microsoft Windows) from github (http://mjsull.github.io/HapFlow).
  
  
  BACKGROUND
  apolking@usc.edu.au.
authors.affiliation: Faculty of Science, Health, Education and Engineering, University of the Sunshine Coast, Sippy Downs, Australia.
authors.forename: Mitchell J
authors.initials: MJ
authors.lastname: Sullivan
authors.affiliation: Faculty of Science, Health, Education and Engineering, University of the Sunshine Coast, Sippy Downs, Australia.
authors.forename: Nathan L
authors.initials: NL
authors.lastname: Bachmann
authors.affiliation: Faculty of Science, Health, Education and Engineering, University of the Sunshine Coast, Sippy Downs, Australia.
authors.forename: Peter
authors.initials: P
authors.lastname: Timms
authors.affiliation: Faculty of Science, Health, Education and Engineering, University of the Sunshine Coast, Sippy Downs, Australia.
authors.forename: Adam
authors.initials: A
authors.lastname: Polkinghorne
mesh_terms: D000818:Animals; D002689:Chlamydia / Q000235:genetics* / Q000302:isolation & purification; D002690:Chlamydia Infections / Q000235:genetics* / Q000382:microbiology; D003196:Computer Graphics; D023281:Genomics / Q000379:methods*; D006239:Haplotypes / Q000235:genetics*; D048368:Phascolarctidae / Q000235:genetics* / Q000382:microbiology; D012984:Software; D014552:Urinary Tract Infections