title: Methods of graph network reconstruction in personalized medicine.
abstract: The paper addresses methods for generation of individualized computational domains on the basis of medical imaging dataset. The computational domains will be used in one-dimensional (1D) and three-dimensional (3D)-1D coupled hemodynamic models. A 1D hemodynamic model employs a 1D network of a patient-specific vascular network with large number of vessels. The 1D network is the graph with nodes in the 3D space which bears additional geometric data such as length and radius of vessels. A 3D hemodynamic model requires a detailed 3D reconstruction of local parts of the vascular network. We propose algorithms which extend the automated segmentation of vascular and tubular structures, generation of centerlines, 1D network reconstruction, correction, and local adaptation. We consider two modes of centerline representation: (i) skeletal segments or sets of connected voxels and (ii) curved paths with corresponding radii. Individualized reconstruction of 1D networks depends on the mode of centerline representation. Efficiency of the proposed algorithms is demonstrated on several examples of 1D network reconstruction. The networks can be used in modeling of blood flows as well as other physiological processes in tubular structures. Copyright © 2015 John Wiley & Sons, Ltd.
authors.affiliation: Institute of Numerical Mathematics RAS, 8 Gubkina St., Moscow, 119333, Russia.|Moscow Institute of Physics and Technology, 9 Institutskii Lane, Moscow, 141700, Russia.
authors.forename: A
authors.identifier: 0000-0002-4709-4513
authors.initials: A
authors.lastname: Danilov
authors.affiliation: Institute of Numerical Mathematics RAS, 8 Gubkina St., Moscow, 119333, Russia.|Moscow Institute of Physics and Technology, 9 Institutskii Lane, Moscow, 141700, Russia.
authors.forename: Yu
authors.initials: Y
authors.lastname: Ivanov
authors.affiliation: Institute of Numerical Mathematics RAS, 8 Gubkina St., Moscow, 119333, Russia.|Moscow Institute of Physics and Technology, 9 Institutskii Lane, Moscow, 141700, Russia.|Moscow State University, 1 Leninskie gory, Moscow, 119991, Russia.
authors.forename: R
authors.initials: R
authors.lastname: Pryamonosov
authors.affiliation: Institute of Numerical Mathematics RAS, 8 Gubkina St., Moscow, 119333, Russia.|Moscow Institute of Physics and Technology, 9 Institutskii Lane, Moscow, 141700, Russia.|Moscow State University, 1 Leninskie gory, Moscow, 119991, Russia.
authors.forename: Yu
authors.initials: Y
authors.lastname: Vassilevski
mesh_terms: D000465:Algorithms; D006439:Hemodynamics; D006801:Humans; D057285:Precision Medicine
keywords: centerline; coronary arteries; graph matching; hemodynamics; segmentation; skeleton