title: Indigenous arsenic(V)-reducing microbial communities in redox-fluctuating near-surface sediments of the Mekong Delta.
abstract: Arsenic (As) cycling within soils and sediments of the Mekong Delta of Cambodia is affected by drastic redox fluctuations caused by seasonal monsoons. Extensive flooding during monsoon seasons creates anoxic soil conditions that favor anaerobic microbial processes, including arsenate [As(V)] respiration-a process contributing to the mobilization of As. Repeated oxidation and reduction in near-surface sediments, which contain 10-40 mg kg(-1) As, lead to the eventual downward movement of As to the underlying aquifer. Amplification of a highly conserved functional gene encoding dissimilatory As(V) reductase, arrA, can be used as a molecular marker to detect the genetic potential for As(V) respiration in environmental samples. However, few studies have successfully amplified arrA from sediments without prior enrichment, which can drastically shift community structure. In the present study, we examine the distribution and diversity of arrA genes amplified from multiple sites within the Cambodian Mekong Delta as a function of near-surface depth (10, 50, 100, 200, and 400 cm), where sediments undergo seasonal redox fluctuations. We report successful amplification of 302 arrA gene sequences (72 OTUs) from near-surface Cambodian soils (without prior enrichment or stimulation with carbon amendments), where a large majority (>70%) formed a well-supported clade that is phylogenetically distinct from previously reported sequences from Cambodia and other South and Southeast Asian sediments, with highest sequence similarity to known Geobacter species capable of As(V) respiration, further supporting the potentially important role of Geobacter sp. in arsenic mobilization in these regions.
authors.affiliation: Department of Environmental Sciences, University of California-Riverside, Riverside, CA, USA.
authors.forename: S C
authors.initials: SC
authors.lastname: Ying
authors.affiliation: Earth System Science Department, Stanford University, Stanford, CA, USA.
authors.forename: J
authors.initials: J
authors.lastname: Damashek
authors.affiliation: Earth System Science Department, Stanford University, Stanford, CA, USA.
authors.forename: S
authors.initials: S
authors.lastname: Fendorf
authors.affiliation: Earth System Science Department, Stanford University, Stanford, CA, USA.
authors.forename: C A
authors.initials: CA
authors.lastname: Francis
mesh_terms: D001151:Arsenic / Q000378:metabolism*; D001419:Bacteria / Q000145:classification* / Q000235:genetics / Q000302:isolation & purification / Q000378:metabolism; D002160:Cambodia; D019015:Geologic Sediments / Q000382:microbiology*; D010084:Oxidation-Reduction; D045483:Rivers / Q000382:microbiology*; D017422:Sequence Analysis, DNA
chemical_list: D001151:Arsenic