Plant Invasions Associated with Change in Root-Zone Microbial Community Structure and Diversity.
The importance of plant-microbe associations for the invasion of plant species have not been often tested under field conditions. The research sought to determine patterns of change in microbial communities associated with the establishment of invasive plants with different taxonomic and phenetic traits. Three independent locations in Virginia, USA were selected. One site was invaded by a grass (Microstegium vimineum), another by a shrub (Rhamnus davurica), and the third by a tree (Ailanthus altissima). The native vegetation from these sites was used as reference. 16S rRNA and ITS regions were sequenced to study root-zone bacterial and fungal communities, respectively, in invaded and non-invaded samples and analyzed using Quantitative Insights Into Microbial Ecology (QIIME). Though root-zone microbial community structure initially differed across locations, plant invasion shifted communities in similar ways. Indicator species analysis revealed that Operational Taxonomic Units (OTUs) closely related to Proteobacteria, Acidobacteria, Actinobacteria, and Ascomycota increased in abundance due to plant invasions. The Hyphomonadaceae family in the Rhodobacterales order and ammonia-oxidizing Nitrospirae phylum showed greater relative abundance in the invaded root-zone soils. Hyphomicrobiaceae, another bacterial family within the phyla Proteobacteria increased as a result of plant invasion, but the effect associated most strongly with root-zones of M. vimineum and R. davurica. Functional analysis using Phylogenetic Investigation of Communities by Reconstruction of Unobserved States (PICRUSt) showed bacteria responsible for nitrogen cycling in soil increased in relative abundance in association with plant invasion. In agreement with phylogenetic and functional analyses, greater turnover of ammonium and nitrate was associated with plant invasion. Overall, bacterial and fungal communities changed congruently across plant invaders, and support the hypothesis that nitrogen cycling bacteria and functions are important factors in plant invasions. Whether the changes in microbial communities are driven by direct plant microbial interactions or a result of plant-driven changes in soil properties remains to be determined.
Interdisciplinary Ph.D. Program in Genetics, Bioinformatics, and Computational Biology, Virginia Tech, Blacksburg, Virginia, United States of America.
Richard R
RR
Rodrigues
Department of Horticulture, Virginia Tech, Blacksburg, Virginia, United States of America.
Rosana P
RP
Pineda
Department of Plant Pathology, Physiology, and Weed Science, Virginia Tech, Blacksburg, Virginia, United States of America.
Jacob N
JN
Barney
Department of Biological Sciences, Virginia Tech, Blacksburg, Virginia, United States of America.
Erik T
ET
Nilsen
Department of Biological Sciences, Virginia Tech, Blacksburg, Virginia, United States of America.
John E
JE
Barrett
Interdisciplinary Ph.D. Program in Genetics, Bioinformatics, and Computational Biology, Virginia Tech, Blacksburg, Virginia, United States of America; Department of Horticulture, Virginia Tech, Blacksburg, Virginia, United States of America.
Mark A
MA
Williams
D039903:Actinobacteria / Q000235:genetics; D032268:Ailanthus / Q000235:genetics* / Q000382:microbiology; D000818:Animals; D005658:Fungi / Q000235:genetics; D014644:Genetic Variation; D058865:Introduced Species; D058458:Nitrogen Cycle; D010802:Phylogeny; D018517:Plant Roots / Q000378:metabolism / Q000382:microbiology*; D006109:Poaceae / Q000235:genetics* / Q000382:microbiology; D020560:Proteobacteria / Q000235:genetics; D012336:RNA, Ribosomal, 16S / Q000235:genetics; D031955:Rhamnus / Q000235:genetics* / Q000382:microbiology; D012988:Soil Microbiology; D014768:Virginia
D012336:RNA, Ribosomal, 16S