The complex genetic and molecular basis of a model quantitative trait.
Quantitative traits are often influenced by many loci with small effects. Identifying most of these loci and resolving them to specific genes or genetic variants is challenging. Yet, achieving such a detailed understanding of quantitative traits is important, as it can improve our knowledge of the genetic and molecular basis of heritable phenotypic variation. In this study, we use a genetic mapping strategy that involves recurrent backcrossing with phenotypic selection to obtain new insights into an ecologically, industrially, and medically relevant quantitative trait-tolerance of oxidative stress, as measured based on resistance to hydrogen peroxide. We examine the genetic basis of hydrogen peroxide resistance in three related yeast crosses and detect 64 distinct genomic loci that likely influence the trait. By precisely resolving or cloning a number of these loci, we demonstrate that a broad spectrum of cellular processes contribute to hydrogen peroxide resistance, including DNA repair, scavenging of reactive oxygen species, stress-induced MAPK signaling, translation, and water transport. Consistent with the complex genetic and molecular basis of hydrogen peroxide resistance, we show two examples where multiple distinct causal genetic variants underlie what appears to be a single locus. Our results improve understanding of the genetic and molecular basis of a highly complex, model quantitative trait.
Molecular and Computational Biology Section, University of Southern California, Los Angeles, CA 90089-2910.
Robert A
RA
Linder
Molecular and Computational Biology Section, University of Southern California, Los Angeles, CA 90089-2910.
Fabian
F
Seidl
Molecular and Computational Biology Section, University of Southern California, Los Angeles, CA 90089-2910.
Kimberly
K
Ha
Molecular and Computational Biology Section, University of Southern California, Los Angeles, CA 90089-2910 Ian.Ehrenreich@usc.edu.
Ian M
IM
Ehrenreich
D002874:Chromosome Mapping; D003433:Crosses, Genetic; D056726:Genetic Association Studies; D014644:Genetic Variation; D006861:Hydrogen Peroxide / Q000378:metabolism; D007178:Inbreeding; D008957:Models, Genetic; D008958:Models, Molecular; D018384:Oxidative Stress / Q000235:genetics*; D040641:Quantitative Trait Loci; D012441:Saccharomyces cerevisiae / Q000235:genetics; D004718:Saccharomycetales / Q000235:genetics
D006861:Hydrogen Peroxide