title: Post-pellet-digestion precipitation and solid phase extraction: A practical and efficient workflow to extract surrogate peptides for ultra-high performance liquid chromatography--tandem mass spectrometry bioanalysis of a therapeutic antibody in the low ng/mL range.
abstract: The current LC-MS/MS approach for bioanalysis of protein therapeutics requires generating peptides from protein molecules via trypsin digestion, followed by sensitive detection of these surrogate peptides by multiple reaction monitoring (MRM). However, the presence of huge amount of matrix-related interference peptides generated from trypsin digestion often causes substantial matrix effect or isobaric interferences during LC-MS/MS analysis. Solid phase extraction (SPE) exhibits great potential in sample extraction to overcome these challenges due to its characteristic features of high selectivity, reproducibility, cost-effectiveness and potential to be automated. Here, we report an effective SPE methodology for the bioanalysis of protein therapeutics involving post-pellet-digestion precipitation and SPE cleanup prior to UHPLC-MS/MS analysis. Specifically, proteins in serum samples were first precipitated with methanol to enrich the protein analyte in the pellet prior to trypsin digestion of the pellet (pellet-digestion). The trypsin digest was further processed by a post-pellet-digestion precipitation (second precipitation) to remove matrix-related clog-causing components prior to SPE on OASIS™ MAX (Mixed-Mode Anion-Exchange) SPE plate. This methodology successfully overcame SPE clogging issue and enabled extraction of 100μL of monkey serum on SPE with significant sensitivity improvement to achieve a lower limit of quantitation (LLOQ) of 50ng/mL for a human monoclonal antibody of the IgG4 subclass. This UHPLC-MS/MS assay was validated in a concentration range of 50-5000ng/mL with intra- and inter-assay precisions of within 9.6% CV, and assay accuracy of within ±2.9% Dev of their nominal concentrations. To our best knowledge, this is the pellet digestion with SPE method for LC-MS/MS bioanalysis of a monoclonal antibody for the first time to achieve a LLOQ in the low ng/mL concentration range.
authors.affiliation: Analytical & Bioanalytical Development, Bristol-Myers Squibb Company, Princeton, NJ 08540, USA.
authors.forename: Chao
authors.initials: C
authors.lastname: Gong
authors.affiliation: Analytical & Bioanalytical Development, Bristol-Myers Squibb Company, Princeton, NJ 08540, USA. Electronic address: naiyu.zheng@bms.com.
authors.forename: Naiyu
authors.initials: N
authors.lastname: Zheng
authors.affiliation: Analytical & Bioanalytical Development, Bristol-Myers Squibb Company, Princeton, NJ 08540, USA. Electronic address: jianing.zeng@bms.com.
authors.forename: Jianing
authors.initials: J
authors.lastname: Zeng
authors.affiliation: Analytical & Bioanalytical Development, Bristol-Myers Squibb Company, Princeton, NJ 08540, USA.
authors.forename: Anne-Françoise
authors.initials: AF
authors.lastname: Aubry
authors.affiliation: Analytical & Bioanalytical Development, Bristol-Myers Squibb Company, Princeton, NJ 08540, USA.
authors.forename: Mark E
authors.initials: ME
authors.lastname: Arnold
mesh_terms: D000818:Animals; D000911:Antibodies, Monoclonal / Q000097:blood / Q000737:chemistry / Q000302:isolation & purification*; D002851:Chromatography, High Pressure Liquid / Q000379:methods; D000882:Haplorhini; D006801:Humans; D007074:Immunoglobulin G / Q000097:blood / Q000737:chemistry / Q000302:isolation & purification*; D010455:Peptides / Q000737:chemistry; D015203:Reproducibility of Results; D044967:Serum; D052616:Solid Phase Extraction / Q000379:methods; D053719:Tandem Mass Spectrometry / Q000379:methods; D014357:Trypsin / Q000737:chemistry
chemical_list: D000911:Antibodies, Monoclonal; D007074:Immunoglobulin G; D010455:Peptides; D014357:Trypsin
keywords: Matrix effect; Pellet digestion; Protein quantitation; Solid phase extraction; Therapeutic antibody; UHPLC–MS/MS