title: Validation of the Thermo Scientific SureTect Escherichia coli O157:H7 Real-Time PCR Assay for Raw Beef and Produce Matrixes.
abstract: The Thermo Scientific™ SureTect™ Escherichia coli O157:H7 Assay is a new real-time PCR assay which has been validated through the AOAC Research Institute (RI) Performance Tested Methods(SM) program for raw beef and produce matrixes. This validation study specifically validated the assay with 375 g 1:4 and 1:5 ratios of raw ground beef and raw beef trim in comparison to the U.S. Department of Agriculture, Food Safety Inspection Service, Microbiology Laboratory Guidebook (USDS-FSIS/MLG) reference method and 25 g bagged spinach and fresh apple juice at a ratio of 1:10, in comparison to the reference method detailed in the International Organization for Standardization 16654:2001 reference method. For raw beef matrixes, the validation of both 1:4 and 1:5 allows user flexibility with the enrichment protocol, although which of these two ratios chosen by the laboratory should be based on specific test requirements. All matrixes were analyzed by Thermo Fisher Scientific, Microbiology Division, Vantaa, Finland, and Q Laboratories Inc, Cincinnati, Ohio, in the method developer study. Two of the matrixes (raw ground beef at both 1:4 and 1:5 ratios) and bagged spinach were additionally analyzed in the AOAC-RI controlled independent laboratory study, which was conducted by Marshfield Food Safety, Marshfield, Wisconsin. Using probability of detection statistical analysis, no significant difference was demonstrated by the SureTect kit in comparison to the USDA FSIS reference method for raw beef matrixes, or with the ISO reference method for matrixes of bagged spinach and apple juice. Inclusivity and exclusivity testing was conducted with 58 E. coli O157:H7 and 54 non-E. coli O157:H7 isolates, respectively, which demonstrated that the SureTect assay was able to detect all isolates of E. coli O157:H7 analyzed. In addition, all but one of the nontarget isolates were correctly interpreted as negative by the SureTect Software. The single isolate giving a positive result was an E. coli O157:NM isolate. Nonmotile isolates of E. coli O157 have been demonstrated to still contain the H7 gene; therefore, this result is not unexpected. Robustness testing was conducted to evaluate the performance of the SureTect assay with specific deviations to the assay protocol, which were outside the recommended parameters and which are open to variation. This study demonstrated that the SureTect assay gave reliable performance. A final study to verify the shelf life of the product, under accelerated conditions was also conducted.
authors.affiliation: Thermo Fisher Scientific, Wade Rd, Basingstoke, Hampshire, RG24 8PW, UK.
authors.forename: Jonathan
authors.initials: J
authors.lastname: Cloke
authors.forename: Erin
authors.initials: E
authors.lastname: Crowley
authors.forename: Patrick
authors.initials: P
authors.lastname: Bird
authors.forename: Ben
authors.initials: B
authors.lastname: Bastin
authors.forename: Jonathan
authors.initials: J
authors.lastname: Flannery
authors.forename: James
authors.initials: J
authors.lastname: Agin
authors.forename: David
authors.initials: D
authors.lastname: Goins
authors.forename: Dorn
authors.initials: D
authors.lastname: Clark
authors.forename: Roy
authors.initials: R
authors.lastname: Radcliff
authors.forename: Nina
authors.initials: N
authors.lastname: Wickstrand
authors.forename: Mikko
authors.initials: M
authors.lastname: Kauppinen
mesh_terms: D000818:Animals; D002417:Cattle; D019453:Escherichia coli O157 / Q000235:genetics*; D005504:Food Analysis / Q000295:instrumentation / Q000379:methods*; D005506:Food Contamination / Q000032:analysis; D006801:Humans; D008460:Meat / Q000032:analysis*; D066256:Raw Foods / Q000032:analysis* / Q000382:microbiology; D011933:Reagent Kits, Diagnostic; D060888:Real-Time Polymerase Chain Reaction / Q000592:standards*; D012680:Sensitivity and Specificity; D018724:Spinacia oleracea / Q000382:microbiology
chemical_list: D011933:Reagent Kits, Diagnostic