title: Species, Abundance and Function of Ammonia-oxidizing Archaea in Inland Waters across China.
abstract: Ammonia oxidation is the first step in nitrification and was thought to be performed solely by specialized bacteria. The discovery of ammonia-oxidizing archaea (AOA) changed this view. We examined the large scale and spatio-temporal occurrence, abundance and role of AOA throughout Chinese inland waters (n = 28). Molecular survey showed that AOA was ubiquitous in inland waters. The existence of AOA in extreme acidic, alkaline, hot, cold, eutrophic and oligotrophic environments expanded the tolerance limits of AOA, especially their known temperature tolerance to -25 °C, and substrate load to 42.04 mM. There were spatio-temporal divergences of AOA community structure in inland waters, and the diversity of AOA in inland water ecosystems was high with 34 observed species-level operational taxonomic units (OTUs; based on a 15% cutoff) distributed widely in group I.1b, I.1a, and I.1a-associated. The abundance of AOA was quite high (8.5 × 10(4) to 8.5 × 10(9) copies g(-1)), and AOA outnumbered ammonia-oxidizing bacteria (AOB) in the inland waters where little human activities were involved. On the whole AOB predominate the ammonia oxidation rate over AOA in inland water ecosystems, and AOA play an indispensable role in global nitrogen cycle considering that AOA occupy a broader habitat range than AOB, especially in extreme environments.
authors.affiliation: Key Laboratory of Drinking Water Science and Technology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, China.
authors.forename: Leiliu
authors.initials: L
authors.lastname: Zhou
authors.affiliation: Key Laboratory of Drinking Water Science and Technology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, China.
authors.forename: Shanyun
authors.initials: S
authors.lastname: Wang
authors.affiliation: Key Laboratory of Drinking Water Science and Technology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, China.
authors.forename: Yuxuan
authors.initials: Y
authors.lastname: Zou
authors.affiliation: Key Laboratory of Drinking Water Science and Technology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, China.
authors.forename: Chao
authors.initials: C
authors.lastname: Xia
authors.affiliation: Key Laboratory of Drinking Water Science and Technology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, China.|Department of Biogeochemistry, Max Planck Institute for Marine Microbiology, Breme, Germany.
authors.forename: Guibing
authors.initials: G
authors.lastname: Zhu
mesh_terms: D000641:Ammonia; D001105:Archaea / Q000235:genetics* / Q000502:physiology*; D001419:Bacteria / Q000235:genetics; D002681:China; D017753:Ecosystem; D058465:Nitrification / Q000235:genetics / Q000502:physiology; D058458:Nitrogen Cycle / Q000235:genetics / Q000502:physiology; D010084:Oxidation-Reduction; D010802:Phylogeny; D012988:Soil Microbiology; D013696:Temperature; D014867:Water / Q000378:metabolism
chemical_list: D014867:Water; D000641:Ammonia