title: Responses of soil microeukaryotic communities to short-term fumigation-incubation revealed by MiSeq amplicon sequencing.
abstract: In soil microbiology, there is a "paradox" of soil organic carbon (SOC) mineralization, which is that even though chloroform fumigation destroys majority of the soil microbial biomass, SOC mineralization continues at the same rate as in the non-fumigated soil during the incubation period. Soil microeukaryotes as important SOC decomposers, however, their community-level responses to chloroform fumigation are not well understood. Using the 18S rRNA gene amplicon sequencing, we analyzed the composition, diversity, and C-metabolic functions of a grassland soil and an arable soil microeukaryotic community in response to fumigation followed by a 30-day incubation. The grassland and arable soil microeukaryotic communities were dominated by the fungal Ascomycota (80.5-93.1% of the fungal sequences), followed by the protistan Cercozoa and Apicomplexa. In the arable soil fungal community, the predominance of the class Sordariomycetes was replaced by the class Eurotiomycetes after fumigation at days 7 and 30 of the incubation. Fumigation changed the microeukaryotic α-diversity in the grassland soil at days 0 and 7, and β-diversity in the arable soil at days 7 and 30. Network analysis indicated that after fumigation fungi were important groups closely related to other taxa. Most phylotypes (especially Sordariomycetes, Dothideomycetes, Coccidia, and uncultured Chytridiomycota) were inhibited, and only a few were positively stimulated by fumigation. Despite the inhibited Sordariomycetes, the fumigated communities mainly consisted of Eurotiomycetes and Sordariomycetes (21.9 and 36.5% relative frequency, respectively), which are able to produce hydrolytic enzymes associated with SOC mineralization. Our study suggests that fumigation not only decreases biomass size, but modulates the composition and diversity of the soil microeukaryotic communities, which are capable of driving SOC mineralization by release of hydrolytic enzymes during short-term fumigation-incubation.
authors.affiliation: Institute of Soil and Water Resources and Environmental Science, Zhejiang University Hangzhou, China.
authors.forename: Lin
authors.initials: L
authors.lastname: Chen
authors.affiliation: Institute of Soil and Water Resources and Environmental Science, Zhejiang University Hangzhou, China.
authors.forename: Jianming
authors.initials: J
authors.lastname: Xu
authors.affiliation: State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences Nanjing, China.
authors.forename: Youzhi
authors.initials: Y
authors.lastname: Feng
authors.affiliation: State Key Laboratory of Urban and Regional Ecology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences Beijing, China.
authors.forename: Juntao
authors.initials: J
authors.lastname: Wang
authors.affiliation: College of Applied Meteorology, Nanjing University of Information Science and Technology Nanjing, China.
authors.forename: Yongjie
authors.initials: Y
authors.lastname: Yu
authors.affiliation: Institute of Soil and Water Resources and Environmental Science, Zhejiang University Hangzhou, China.
authors.forename: Philip C
authors.initials: PC
authors.lastname: Brookes
keywords: enzymes; fumigation; fungi; network analysis; protist