title: MIEC-SVM: automated pipeline for protein peptide/ligand interaction prediction.
abstract: MIEC-SVM is a structure-based method for predicting protein recognition specificity. Here, we present an automated MIEC-SVM pipeline providing an integrated and user-friendly workflow for construction and application of the MIEC-SVM models. This pipeline can handle standard amino acids and those with post-translational modifications (PTMs) or small molecules. Moreover, multi-threading and support to Sun Grid Engine (SGE) are implemented to significantly boost the computational efficiency.
  
  
  
  The program is available at http://wanglab.ucsd.edu/MIEC-SVM CONTACT: : wei-wang@ucsd.edu
  
  
  
  Supplementary data available at Bioinformatics online.
authors.affiliation: Department of Chemistry and Biochemistry, UC, San Diego, La Jolla, CA 92093-0359 USA.
authors.forename: Nan
authors.initials: N
authors.lastname: Li
authors.affiliation: Department of Chemistry and Biochemistry, UC, San Diego, La Jolla, CA 92093-0359 USA.
authors.forename: Richard I
authors.initials: RI
authors.lastname: Ainsworth
authors.affiliation: Department of Chemistry and Biochemistry, UC, San Diego, La Jolla, CA 92093-0359 USA.
authors.forename: Meixin
authors.initials: M
authors.lastname: Wu
authors.affiliation: Department of Chemistry and Biochemistry, UC, San Diego, La Jolla, CA 92093-0359 USA.
authors.forename: Bo
authors.initials: B
authors.lastname: Ding
authors.affiliation: Department of Chemistry and Biochemistry, UC, San Diego, La Jolla, CA 92093-0359 USA.
authors.forename: Wei
authors.initials: W
authors.lastname: Wang
mesh_terms: D008024:Ligands; D010455:Peptides; D011499:Protein Processing, Post-Translational; D011506:Proteins; D012984:Software
chemical_list: D008024:Ligands; D010455:Peptides; D011506:Proteins