title: Insights into the Activity and Substrate Binding of Xylella fastidiosa Polygalacturonase by Modification of a Unique QMK Amino Acid Motif Using Protein Chimeras.
abstract: Polygalacturonases (EC 3.2.1.15) catalyze the random hydrolysis of 1, 4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. Xylella fastidiosa possesses a single polygalacturonase gene, pglA (PD1485), and X. fastidiosa mutants deficient in the production of polygalacturonase are non-pathogenic and show a compromised ability to systemically infect grapevines. These results suggested that grapevines expressing sufficient amounts of an inhibitor of X. fastidiosa polygalacturonase might be protected from disease. Previous work in our laboratory and others have tried without success to produce soluble active X. fastidiosa polygalacturonase for use in inhibition assays. In this study, we created two enzymatically active X. fastidiosa / A. vitis polygalacturonase chimeras, AX1A and AX2A to explore the functionality of X. fastidiosa polygalacturonase in vitro. The AX1A chimera was constructed to specifically test if recombinant chimeric protein, produced in Escherichia coli, is soluble and if the X. fastidiosa polygalacturonase catalytic amino acids are able to hydrolyze polygalacturonic acid. The AX2A chimera was constructed to evaluate the ability of a unique QMK motif of X. fastidiosa polygalacturonase, most polygalacturonases have a R(I/L)K motif, to bind to and allow the hydrolysis of polygalacturonic acid. Furthermore, the AX2A chimera was also used to explore what effect modification of the QMK motif of X. fastidiosa polygalacturonase to a conserved RIK motif has on enzymatic activity. These experiments showed that both the AX1A and AX2A polygalacturonase chimeras were soluble and able to hydrolyze the polygalacturonic acid substrate. Additionally, the modification of the QMK motif to the conserved RIK motif eliminated hydrolytic activity, suggesting that the QMK motif is important for the activity of X. fastidiosa polygalacturonase. This result suggests X. fastidiosa polygalacturonase may preferentially hydrolyze a different pectic substrate or, alternatively, it has a different mechanism of substrate binding than other polygalacturonases characterized to date.
authors.affiliation: Department of Plant Pathology, University of California Davis, Davis, California, United States of America.
authors.forename: Jeremy G
authors.initials: JG
authors.lastname: Warren
authors.affiliation: Department of Plant Pathology, University of California Davis, Davis, California, United States of America.
authors.forename: James E
authors.initials: JE
authors.lastname: Lincoln
authors.affiliation: Department of Plant Pathology, University of California Davis, Davis, California, United States of America.
authors.forename: Bruce C
authors.initials: BC
authors.lastname: Kirkpatrick
mesh_terms: D060054:Agrobacterium / Q000378:metabolism; D020816:Amino Acid Motifs; D000596:Amino Acids / Q000737:chemistry; D002384:Catalysis; D020134:Catalytic Domain; D003001:Cloning, Molecular; D004926:Escherichia coli / Q000378:metabolism; D006868:Hydrolysis; D009154:Mutation; D010935:Plant Diseases / Q000382:microbiology; D010957:Plasmids / Q000378:metabolism; D017354:Point Mutation; D011096:Polygalacturonase / Q000737:chemistry*; D016133:Polymerase Chain Reaction; D017434:Protein Structure, Tertiary; D011993:Recombinant Fusion Proteins / Q000737:chemistry; D044167:Xylella / Q000378:metabolism*
chemical_list: D000596:Amino Acids; D011993:Recombinant Fusion Proteins; D011096:Polygalacturonase