title: Complete genome analysis of a novel recombinant isolate of pepper veinal mottle virus from mainland China.
abstract: BACKGROUND
  Pepper veinal mottle virus (PVMV) was well established in Africa, and also reported infecting pepper (Capsicum annuum L) in Taiwan and India. However, there is not available of PVMV in mainland China. Here, the first complete genome sequence of PVMV isolated from pepper in mainland China was reported.
  
  
  RESULTS
  The complete genomic sequence of isolate PVMV-HN isolated from pepper in mainland China is reported in this study. The genome of PVMV-HN is 9793 nucleotides (nt) excluding the poly (A) tail, shares 98-99 % nucleotide sequence identity with those two PVMV isolates from Ghana and Taiwan. Recombinant analysis showed that PVMV-HN probably represents a novel recombinant of PVMV. The phylogenetic relationship of PVMV-HN isolate to other PVMV isolates and other potyviruses based on genome or polyprotein sequence level and CP gene level, was also analyzed in this study.
  
  
  CONCLUSIONS
  The current study will help to understand phylogenetic relationship of isolate PVMV-HN.
authors.affiliation: Key Laboratory of Pest Management of Horticultural Crop of Hunan Province, Hunan Plant Protection Institute, Hunan Academy of Agricultural Science, Changsha, 410125, China.|Shaoyang University, Shaoyang, 422000, China.
authors.forename: Songbai
authors.initials: S
authors.lastname: Zhang
authors.affiliation: Shaoyang University, Shaoyang, 422000, China.
authors.forename: Zibing
authors.initials: Z
authors.lastname: Zhao
authors.affiliation: Key Laboratory of Pest Management of Horticultural Crop of Hunan Province, Hunan Plant Protection Institute, Hunan Academy of Agricultural Science, Changsha, 410125, China.
authors.forename: Limin
authors.initials: L
authors.lastname: Zheng
authors.affiliation: Longping Branch, Graduate College, Central South University, Changsha, 410125, China.
authors.forename: Jian
authors.initials: J
authors.lastname: Liu
authors.affiliation: Key Laboratory of Pest Management of Horticultural Crop of Hunan Province, Hunan Plant Protection Institute, Hunan Academy of Agricultural Science, Changsha, 410125, China.
authors.forename: Jing
authors.initials: J
authors.lastname: Peng
authors.affiliation: Virology and Biotechnology Institute, Zhejiang Academy of Agricultural Sciences, Hangzhou, 310021, China.
authors.forename: Fei
authors.initials: F
authors.lastname: Yan
authors.affiliation: Key Laboratory of Agricultural Biodiversity for Pest Management of China Education Ministry, Yunnan Agricultural University, Kunming, 650201, China.
authors.forename: Fan
authors.initials: F
authors.lastname: Li
authors.affiliation: Institute of Biotechnology, Zhejiang University, Hangzhou, 310058, China.
authors.forename: Yan
authors.initials: Y
authors.lastname: Xie
authors.affiliation: Institute of Plant Protection, Jiangsu Academy of Agricultural Sciences, Nanjing, 201014, China.
authors.forename: Zhaobang
authors.initials: Z
authors.lastname: Cheng
authors.affiliation: Key Laboratory of Pest Management of Horticultural Crop of Hunan Province, Hunan Plant Protection Institute, Hunan Academy of Agricultural Science, Changsha, 410125, China.
authors.forename: Xuguo
authors.initials: X
authors.lastname: Zhou
authors.affiliation: Key Laboratory of Pest Management of Horticultural Crop of Hunan Province, Hunan Plant Protection Institute, Hunan Academy of Agricultural Science, Changsha, 410125, China. dyzhang78@163.com.|Longping Branch, Graduate College, Central South University, Changsha, 410125, China. dyzhang78@163.com.
authors.forename: Deyong
authors.initials: D
authors.lastname: Zhang
authors.affiliation: Key Laboratory of Pest Management of Horticultural Crop of Hunan Province, Hunan Plant Protection Institute, Hunan Academy of Agricultural Science, Changsha, 410125, China. haoasliu@163.com.|Longping Branch, Graduate College, Central South University, Changsha, 410125, China. haoasliu@163.com.
authors.forename: Yong
authors.initials: Y
authors.lastname: Liu
mesh_terms: D002212:Capsicum / Q000821:virology*; D002681:China; D016000:Cluster Analysis; D016678:Genome; D016679:Genome, Viral; D008969:Molecular Sequence Data; D010802:Phylogeny; D010935:Plant Diseases / Q000821:virology*; D017800:Potyvirus / Q000235:genetics* / Q000302:isolation & purification*; D012367:RNA, Viral / Q000235:genetics*; D011995:Recombination, Genetic; D017422:Sequence Analysis, DNA; D017385:Sequence Homology
chemical_list: D012367:RNA, Viral